Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001025A_C01 KCC001025A_c01
(536 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_006159.1| NK6 transcription factor related, locus 1; NK h... 39 0.043
emb|CAD39047.1| hypothetical protein [Homo sapiens] 37 0.21
ref|NP_115642.1| hypothetical protein DKFZp434G118 [Homo sapiens... 37 0.21
ref|XP_220207.2| similar to splicing coactivator subunit SRm300;... 36 0.28
emb|CAC03679.1| SRM102 [Arabidopsis thaliana] 36 0.37
>ref|NP_006159.1| NK6 transcription factor related, locus 1; NK homeo box, family 6,
member A; Nkx6.1; NK6 transcription factor homolog A
(Drosophila) [Homo sapiens]
gi|6016211|sp|P78426|NK61_HUMAN Homeobox protein Nkx-6.1
gi|1894911|gb|AAD11962.1| NK homeobox protein [Homo
sapiens]
Length = 367
Score = 38.9 bits (89), Expect = 0.043
Identities = 38/112 (33%), Positives = 52/112 (45%), Gaps = 10/112 (8%)
Frame = +2
Query: 215 LPAGG*GFASVSLSRQTAGAPVGKH-----RQLATG-----GTGPSQVSHATQADPGPHA 364
LPAG +S S S + P+G H + ATG G+ P Q+S AT PH
Sbjct: 43 LPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAAT-----PHG 97
Query: 365 IDVINTRLSLPAGHGKQEHTLPRKSRA*NRARGVAHARALLRPAAAAAPSRA 520
I+ I +R S+P G LP S + + + + A A AAAAA + A
Sbjct: 98 INNILSRPSMPVASGA---ALPSASPSGSSSSSSSSASASSASAAAAAAAAA 146
>emb|CAD39047.1| hypothetical protein [Homo sapiens]
Length = 845
Score = 36.6 bits (83), Expect = 0.21
Identities = 21/68 (30%), Positives = 28/68 (40%), Gaps = 5/68 (7%)
Frame = +1
Query: 274 PRRQTPPAGNRRHWSQPSLARHTSRPWAACHR-----CHKHASFSTRRPWKTRAHPPSQV 438
P R+ + + R W PS H S P +CH H + S R P + R H PS+
Sbjct: 454 PSRKNHSSPSERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSER 513
Query: 439 KSLKPRTR 462
P R
Sbjct: 514 SHRSPSER 521
>ref|NP_115642.1| hypothetical protein DKFZp434G118 [Homo sapiens]
gi|12053293|emb|CAB66832.1| hypothetical protein [Homo
sapiens]
Length = 939
Score = 36.6 bits (83), Expect = 0.21
Identities = 21/68 (30%), Positives = 28/68 (40%), Gaps = 5/68 (7%)
Frame = +1
Query: 274 PRRQTPPAGNRRHWSQPSLARHTSRPWAACHR-----CHKHASFSTRRPWKTRAHPPSQV 438
P R+ + + R W PS H S P +CH H + S R P + R H PS+
Sbjct: 548 PSRKNHSSPSERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSER 607
Query: 439 KSLKPRTR 462
P R
Sbjct: 608 SHRSPSER 615
>ref|XP_220207.2| similar to splicing coactivator subunit SRm300; RNA binding protein;
AT-rich element binding factor [Rattus norvegicus]
Length = 1971
Score = 36.2 bits (82), Expect = 0.28
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +1
Query: 265 RRRPRRQTPPAGNRRHWSQPSLARHTSR---PWAACHRCHKHASFSTRRPWKTRAHPPSQ 435
RRR R +TPP RR S+ R SR P R + TRR ++R P ++
Sbjct: 1131 RRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRSPPVTRRRSRSRTSPVTR 1190
Query: 436 VKS---LKPRTRR--RACTCPTTSR 495
+S P TRR R+ T P T R
Sbjct: 1191 RRSRSRTSPVTRRRSRSRTSPVTRR 1215
>emb|CAC03679.1| SRM102 [Arabidopsis thaliana]
Length = 894
Score = 35.8 bits (81), Expect = 0.37
Identities = 26/79 (32%), Positives = 32/79 (39%)
Frame = +1
Query: 259 ADRRRPRRQTPPAGNRRHWSQPSLARHTSRPWAACHRCHKHASFSTRRPWKTRAHPPSQV 438
A RR R +PPA RR S P+ R + P A HR + R P PP++
Sbjct: 321 APSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSP-----SPPARR 375
Query: 439 KSLKPRTRRRACTCPTTSR 495
P RRR P R
Sbjct: 376 HRSPPPARRRRSPSPPARR 394
