KCC001021A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001021A_C01 KCC001021A_c01
gcacgagacgggatGCTTCGGGTAATTCCGAGATCCTGCAGCCTGCGACATGGTTTCCTC
GCCCGGCCGGTGACGCCCTTGCGGCCGGAGCGGCAGGAATCCCTACAGGCGGGCATAAGG
ACAGCGCTGGACTGTCACTGAGACTGGAGCTTCGCGTGTGATGATGTGTGTGCGGGGCGA
GACGAGTCAAAAGCAGGGTGTGCGTTGTTGTTTTTTAGACGGCAGGAAGCGCCTATCCCG
GCGCGCGTGCGGTTGCTAGTACGTTTGAACACTCTTTTGAGCATGGCAGGTGTGCGTGTC
AACATGTTCTGTGCATTTAAATTGTTTCTTCCTAAAGCATGGGGCACGGAGGGATTTGTC
GCGCCCTCAGCGCGCCCTGGCGCAAGTCTGTCCGCATCGAAGACATCTGCCCCAGGAAGC
AGGAGTCTGCACCACTAGGGCTTTAAGGTTTCTACCTCCACGAACCAACAACTTTGCGTG
TGACGGTGTGCCATCCCGATCTGGATCTACAACAAGTCCGAGGGCCTCCAAGCATCTGGA
TCAACCTATGTCGACGCCTTGCGGCTTGACCAACTCCTAAACATTGTGCAAGCGCATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001021A_C01 KCC001021A_c01
         (598 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_501617.1| COLlagen structural gene (col-120) [Caenorhabdi...    38  0.094
ref|XP_307978.1| ENSANGP00000006290 [Anopheles gambiae] gi|30178...    37  0.27
ref|XP_307976.1| ENSANGP00000024695 [Anopheles gambiae] gi|30178...    36  0.36
ref|XP_307973.1| ENSANGP00000013470 [Anopheles gambiae] gi|30178...    36  0.47
ref|XP_318754.1| ENSANGP00000004678 [Anopheles gambiae] gi|21302...    34  1.8

>ref|NP_501617.1| COLlagen structural gene (col-120) [Caenorhabditis elegans]
           gi|7509391|pir||T26465 hypothetical protein Y11D7A.11 -
           Caenorhabditis elegans gi|3880729|emb|CAA21586.1| C.
           elegans COL-120 protein (corresponding sequence
           Y11D7A.11) [Caenorhabditis elegans]
          Length = 313

 Score = 38.1 bits (87), Expect = 0.094
 Identities = 33/96 (34%), Positives = 41/96 (42%)
 Frame = -3

Query: 317 NAQNMLTRTPAMLKRVFKRTSNRTRAGIGASCRLKNNNAHPAFDSSRPAHTSSHAKLQSQ 138
           N +NM   T A+     KR     +AG GAS   + + +HPA      A TSS +   S 
Sbjct: 64  NLENMYESTKAVGSGPVKR-----QAGYGASSPSRASGSHPAPSPYDAASTSSSSSSDSC 118

Query: 137 *QSSAVLMPACRDSCRSGRKGVTGRARKPCRRLQDL 30
                 L        R GR G+ G A KP R  QDL
Sbjct: 119 CSCGIGLAGPAGFPGRPGRDGIDGPAGKPGRDGQDL 154

>ref|XP_307978.1| ENSANGP00000006290 [Anopheles gambiae] gi|30178968|gb|EAA03819.2|
           ENSANGP00000006290 [Anopheles gambiae str. PEST]
          Length = 425

 Score = 36.6 bits (83), Expect = 0.27
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 416 PGADVFDADRLAPGRAEG-ATNPSVPHALG-RNNLNAQNMLTRTPAMLKRVFKR 261
           P AD+FD DR  P R+EG +TN  +P + G RN +  +  +     ML  + +R
Sbjct: 369 PDADLFDPDRFLPERSEGRSTNVFIPFSAGSRNCIGGRYAMLSMKVMLSSILRR 422

>ref|XP_307976.1| ENSANGP00000024695 [Anopheles gambiae] gi|30178965|gb|EAA45528.1|
           ENSANGP00000024695 [Anopheles gambiae str. PEST]
          Length = 461

 Score = 36.2 bits (82), Expect = 0.36
 Identities = 21/59 (35%), Positives = 31/59 (51%), Gaps = 2/59 (3%)
 Frame = -3

Query: 416 PGADVFDADRLAPGRAEG-ATNPSVPHALG-RNNLNAQNMLTRTPAMLKRVFKRTSNRT 246
           P ADVFD DR  P R+EG + N  +P + G RN +  +  +     ML  + +R   R+
Sbjct: 375 PDADVFDPDRFLPERSEGRSANVFIPFSAGSRNCIGGRYAMLSMKVMLSSILRRLRLRS 433

>ref|XP_307973.1| ENSANGP00000013470 [Anopheles gambiae] gi|30178966|gb|EAA03721.2|
           ENSANGP00000013470 [Anopheles gambiae str. PEST]
          Length = 436

 Score = 35.8 bits (81), Expect = 0.47
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 416 PGADVFDADRLAPGRAEG-ATNPSVPHALG-RNNLNAQNMLTRTPAMLKRVFKR 261
           P ADVFD DR  P R+EG + N  +P + G RN +  +  +     ML  + +R
Sbjct: 380 PDADVFDPDRFLPERSEGRSANVFIPFSAGSRNCIGGRYAMLSMKVMLSSILRR 433

>ref|XP_318754.1| ENSANGP00000004678 [Anopheles gambiae] gi|21302415|gb|EAA14560.1|
           ENSANGP00000004678 [Anopheles gambiae str. PEST]
          Length = 458

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 416 PGADVFDADRLAPGRAEG-ATNPSVPHALG-RNNLNAQNMLTRTPAMLKRVFKRTSNRT 246
           P ADVFD DR  P R+EG + N  +P + G RN +  +  +      L  + +R   R+
Sbjct: 371 PDADVFDPDRFLPERSEGRSANVFIPFSAGARNCIGGRYAMLSMKVTLSSILRRLRLRS 429



EST assemble image


clone accession position
1 CM010d04_r AV386964 1 459
2 LC025e11_r AV620692 15 344
3 MX204f02_r BP089299 36 399
4 LC015g08_r AV619977 90 598
5 HC082b01_r AV638111 184 591




Chlamydomonas reinhardtii
Kazusa DNA Research Institute