KCC001013A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001013A_C01 KCC001013A_c01
caattcccttgacgaCATAGACGGGCCTGTGCACTACACACTTAAATTCCCCGTTGCTTG
TCCCGGAACCAAACCATGCAGCGGTCAAGTCGCCAGGCAATTGCTCTTCTGCGTAGCCCG
GCTACGCAGGAGGCCATGCAGCAGCTGGCGGCCTCTACCTCTTTTGGCGCCCAGCAATTC
AGGTTCATTGGAGGCGACAGGGTTCCTGAGTTCTGGGGCAAGCCATCGCCATACACCGGC
GGCACAGACTTCCTGGGCACGCCGAAGAACCACCTTGACCTTATCAAGAAGCGCCCGCTG
TCGCCTGACGTAATGGAGATTGACAACAAGTCCGCGCACTACAAATTCCCTCTGGGCGCG
CTGAGCTCCATCACCAACCGTGTGACCGGCGTGGCGCTGTCCGTGGGCTTTGCCGGCGCC
GGCGTGTTCGCGCTGCGCGGCTCCCTGGACGGCGTGGTGGCGGCCTGCGCCGGCTCCTTC
CTCATCGGCTTCCCGCTCAAGTTCCTGGTGTCGTACGCCATCATCTACCACTGGCTGGGC
GGGCTGCGGCACATCGTGTGGGACGTGTCCAAGATTGGCAACCAGGCCGACCGCACCAGT
CTGCTGGAGCTGCCCAAGGTGGAGATGAGCAGCAAGGTCCTGCTGGGAGCCAGCGCCGCC
CTGGCGCTCATCGCCGCGGTGCTGTGAGCGGCAGCACGGCAGTGGTAGCAGCCGAGTAGA
GGAGCAGGCCAGCGGGAGGAGGAGGCGGCGCAGGAGGAGGCGGCAGCACAGCAGTACAGC
GGCCGTGGGTGGAGAGGTGAGACCGGTGCCATGTACTGAGGCAGCCAATTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001013A_C01 KCC001013A_c01
         (831 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL92198.1| similar to Cricetulus griseus (Chinese hamster). ...    67  4e-10
ref|ZP_00054198.1| COG2009: Succinate dehydrogenase/fumarate red...    58  2e-07
gb|AAM29561.1| RH04289p [Drosophila melanogaster]                      57  5e-07
ref|NP_797222.1| succinate dehydrogenase, cytochrome b556 subuni...    57  5e-07
gb|AAL49350.1| RH44771p [Drosophila melanogaster]                      56  6e-07

>gb|AAL92198.1| similar to Cricetulus griseus (Chinese hamster). Succinate
           dehydrogenase cytochrome b560 subunit, mitochondrial
           precursor (Integral membrane protein CII-3) (QPS1)
           (QPs-1) [Dictyostelium discoideum]
          Length = 192

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
 Frame = +1

Query: 232 YTGGTDFLGTPKNHLDLIKKRPLSPDVMEIDN-------KSAH---YKFPLGALSSITNR 381
           Y   T+   TP ++    KK P +     ID         S H   YKFPL A+ SI +R
Sbjct: 35  YLSQTNTTNTPLSYSTQAKK-PFTITEKRIDELKTPYQPTSPHLTIYKFPLPAVMSIMHR 93

Query: 382 VTGVALSVGFAG-AGV--FALRGSLDGVVAACAGSFLIGFPLKFLVSYAIIYHWLGGLRH 552
            TG+ L++G  G AGV  FA   ++  +         + +P KF V+  + YH+  G+RH
Sbjct: 94  ATGICLALGITGLAGVTLFAPHDAIHYIQLLHTQYPALVYPAKFAVALPLTYHFCTGVRH 153

Query: 553 IVWDVSKIGNQADRTSLLELPKVEMSSKVLLGASAALALI 672
           I+WD +  G        L + ++E S KVLL   A L+ I
Sbjct: 154 IIWDETVKG--------LSISQIESSGKVLLAVVAVLSTI 185

>ref|ZP_00054198.1| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b
           subunit [Magnetospirillum magnetotacticum]
          Length = 125

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
 Frame = +1

Query: 286 KKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVGFAGAGVFALRGSLDGVVAA 465
           + RPLSP V         Y+ P  A+ SI++R+TGVAL+VG      + L  +  G VA 
Sbjct: 4   RTRPLSPHVQV-------YRMPFTAILSISHRITGVALAVGTI-VLAYWLASAAYGPVAY 55

Query: 466 CAGSFLIGFPLKFLVSY----AIIYHWLGGLRHIVWDVSKIGNQADRTSLLELPKVEMSS 633
                ++G  L  LV +    A+ YH   G+RH+ WD  +           E+ + + S 
Sbjct: 56  GHAQAVLGSVLGKLVLFGWTAALFYHLCNGIRHLFWDKGR---------GYEIAEADKSG 106

Query: 634 KVLLGASAALALIAAV 681
           ++++GA+A L ++A V
Sbjct: 107 RMVVGAAALLTVLAWV 122

>gb|AAM29561.1| RH04289p [Drosophila melanogaster]
          Length = 171

 Score = 56.6 bits (135), Expect = 5e-07
 Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
 Frame = +1

Query: 103 ALLRSPATQEAMQQLAASTSFGAQQFRFIGGDRVPEFWGKPSPYTGGTDFLGTPKNHLDL 282
           +L+RSPA ++ +Q  AAS     +        +   F+ K        + LG        
Sbjct: 7   SLIRSPALRQGLQMAAASRQVSMKVVSVAETQKDESFFEK-------NERLG-------- 51

Query: 283 IKKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVGFAGAGVFALRGSLD--GV 456
              R LSP +         Y+  L ++ SI +R TG+AL VG  G G+ AL  S D    
Sbjct: 52  ---RELSPHL-------TIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHY 101

Query: 457 VAACAGSFLIGFPL---KFLVSYAIIYHWLGGLRHIVWDVSKIGNQADRTSLLELPKVEM 627
           V    G  L G  L   KF+++Y   YH   G+RH++WD  +          L++ +V  
Sbjct: 102 VTMVEGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGR---------FLKIKEVYS 152

Query: 628 SSKVLLGASAALALIAAVL 684
           +   ++  S  L+ I A+L
Sbjct: 153 TGYAMVATSFVLSAILALL 171

>ref|NP_797222.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
           parahaemolyticus RIMD 2210633]
           gi|28805829|dbj|BAC59106.1| succinate dehydrogenase,
           cytochrome b556 subunit [Vibrio parahaemolyticus]
          Length = 130

 Score = 56.6 bits (135), Expect = 5e-07
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
 Frame = +1

Query: 286 KKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVGFAGAGVFALRGSLDGVVAA 465
           K RP++ D+  I       +FP+ A++SI +RV+GV   V   G  ++ L  SL   +  
Sbjct: 9   KSRPVNLDLQTI-------RFPITAIASILHRVSGVITFVA-VGILLWLLSISLSSHMGF 60

Query: 466 CAGSFLI-GFPLKFL---VSYAIIYHWLGGLRHIVWDVSKIGNQADRTSLLELPKVEMSS 633
              + ++ GF +KF+   +  A+ YH  GG+RH++ D+             EL    MS+
Sbjct: 61  MEAADIVDGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFE---------ELDSGAMSA 111

Query: 634 KVLLGASAALALIAAVL 684
           KV  GA+A L+L+A +L
Sbjct: 112 KVAFGATAVLSLLAGIL 128

>gb|AAL49350.1| RH44771p [Drosophila melanogaster]
          Length = 171

 Score = 56.2 bits (134), Expect = 6e-07
 Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
 Frame = +1

Query: 103 ALLRSPATQEAMQQLAASTSFGAQQFRFIGGDRVPEFWGKPSPYTGGTDFLGTPKNHLDL 282
           +L+RSPA ++ +Q  AAS     +        +   F+ K        + LG        
Sbjct: 7   SLIRSPALRQGLQMAAASRPVSMKVVSVAETQKDESFFEK-------NERLG-------- 51

Query: 283 IKKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVGFAGAGVFALRGSLD--GV 456
              R LSP +         Y+  L ++ SI +R TG+AL VG  G G+ AL  S D    
Sbjct: 52  ---RELSPHL-------TIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHY 101

Query: 457 VAACAGSFLIGFPL---KFLVSYAIIYHWLGGLRHIVWDVSKIGNQADRTSLLELPKVEM 627
           V    G  L G  L   KF+++Y   YH   G+RH++WD  +          L++ +V  
Sbjct: 102 VTMVEGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGR---------FLKIKEVYS 152

Query: 628 SSKVLLGASAALALIAAVL 684
           +   ++  S  L+ I A+L
Sbjct: 153 TGYAMVATSFVLSAILALL 171



EST assemble image


clone accession position
1 HC079c10_r AV637914 1 490
2 CM010a12_r AV387018 9 543
3 HC100d10_r AV639521 16 484
4 CM063a06_r AV390055 17 602
5 CM069e02_r AV391173 22 613
6 CM022a03_r AV387856 24 595
7 MX235f09_r BP091227 27 299
8 MX213c12_r BP089751 54 362
9 CM023c04_r AV387781 262 836




Chlamydomonas reinhardtii
Kazusa DNA Research Institute