KCC001009A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001009A_C01 KCC001009A_c01
caataagtCAAGCAAATACAAATGCAGAGCCTGCGTGCCCCCGCCCCTTTCCGGGCTGTG
AAGCCTGCTTCGCGGTCCGCGTTCGCGCCCGTGCGTATGCCGGTGGCCACCGCTCGCCAG
GTGGCTGTCTTTGCGAAGGTCAACCAGTGGCCTGACCCGGAGTTCATTAAGGAGACCCTG
GAGGCCTTCCCTGACAAGGGCATTGCTACTGTGGAGGAGGCTCGGTGCCTTTTCTCCAAC
GGTGGTTATACCTGGCTGGACGTGCGCTCGGAGCTGGAGAACGAGGAGGTCGGCAAGGTG
AAGGGCAGCGTGAACGTGCCCTTCGTGCACCTGAAGCGTGTCTACAACCCGGAGACTCAG
GAGCGCGACATGAAGAAGACCCCCAACCCCGACTTCGTTAAGCAGGTCGAGAAGCGCTTC
CCCAAGAAGGACACCAAGCTCATGGTGGGCTGCTCCAACGGCAAGGCCTACTCCATCGAC
GCGCTGGAGGCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001009A_C01 KCC001009A_c01
         (494 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA20278.1| hypothetical protein [Plasmodium yoelii yoelii]         47  1e-04
ref|ZP_00089904.1| COG1674: DNA segregation ATPase FtsK/SpoIIIE ...    47  2e-04
ref|XP_290770.2| KIAA1447 protein [Homo sapiens]                       45  4e-04
emb|CAE03677.1| OSJNBa0042N22.21 [Oryza sativa (japonica cultiva...    45  6e-04
gb|AAH58068.1| Unknown (protein for MGC:63802) [Danio rerio]           45  6e-04

>gb|EAA20278.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 598

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 38/113 (33%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
 Frame = -2

Query: 361 PESPGCRH------ASGARRARSRCPSPCRPPRSPAPSARPARYNHRWRKGTEPPPQ*QC 200
           P  PG  H      A  A   RS CP+   P R+ AP     R  H  R G+ P     C
Sbjct: 11  PLPPGAPHPAPRASAGDASHRRSACPARRTPRRTRAPGTPGPRGRH--RAGSAP-----C 63

Query: 199 PCQGRPPGSP**TPGQATG*PSQRQPPGERWPPAYARARTRTAKQASQPGKGR 41
           P   RP  +P  +P  A   P Q  PP    PP   R R +TA    + G+ R
Sbjct: 64  PDGSRPAAAPRPSPPHAPAPPLQAHPP---LPPRRLRERRQTALLQGEAGRHR 113

>ref|ZP_00089904.1| COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins
           [Azotobacter vinelandii]
          Length = 1336

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 56/180 (31%), Positives = 70/180 (38%), Gaps = 27/180 (15%)
 Frame = -2

Query: 490 PPARRWSRPCRWS-----SPP*AWCPSWGSASRPA*RSRGWGSSSCRAPESPGCRHASGA 326
           PP+RR +R  R +     S P    P   +  R   R RG G S  R    P  R  + A
Sbjct: 134 PPSRRLTRQRRAAAKTRPSQPGPVTPWVRARRRQRYRPRGSGGSPHRPAPVPARRPPARA 193

Query: 325 RRARSRCPSPCRPPRSPAPSARPARYNHRWRKGTEPPPQ-------*QCPC-----QGRP 182
           R   SR PSP    RSP    R AR        + PPP+        +CP      + RP
Sbjct: 194 RTG-SRSPSPPPAGRSPGAWRRTAR--------SSPPPRPCRASVGLRCPSAAGPDRARP 244

Query: 181 PGSP**TPGQATG*PSQ---------RQPPGERWPPAYARARTRTAK-QASQPGKGRGHA 32
             SP   PG     P+          R+PP  R P A A +  RT +   + PG   G A
Sbjct: 245 SDSPPPLPGPVARTPASAPPGPPATTRRPPAGRAPKATAASWRRTGRWPCAMPGTATGRA 304

>ref|XP_290770.2| KIAA1447 protein [Homo sapiens]
          Length = 174

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 38/107 (35%), Positives = 41/107 (37%)
 Frame = -2

Query: 397 RSRGWGSSSCRAPESPGCRHASGARRARSRCPSPCRPPRSPAPSARPARYNHRWRKGTEP 218
           R+R  G  S R P   G R AS   R  SRCP+      + APS    R    WR    P
Sbjct: 9   RTRRGGHPSPRCPW--GWRCASTRARQSSRCPTTAT---ATAPSRTRTRTGRGWRPACPP 63

Query: 217 PPQ*QCPCQGRPPGSP**TPGQATG*PSQRQPPGERWPPAYARARTR 77
                CPC   P   P   P QA   P    PP  R  P     RTR
Sbjct: 64  ASSPACPCPLPPLARP-PPPPQAPCPPPASAPPTTRTRPTAQTTRTR 109

>emb|CAE03677.1| OSJNBa0042N22.21 [Oryza sativa (japonica cultivar-group)]
          Length = 815

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 31/85 (36%), Positives = 36/85 (41%)
 Frame = -2

Query: 325 RRARSRCPSPCRPPRSPAPSARPARYNHRWRKGTEPPPQ*QCPCQGRPPGSP**TPGQAT 146
           R+A SR PSP  PP  PAPS               PPP+   P    PP  P  TP  + 
Sbjct: 434 RQAASRAPSPPAPPSPPAPSP------------PVPPPRPPAP---SPPAPPPPTPAPSP 478

Query: 145 G*PSQRQPPGERWPPAYARARTRTA 71
             P    PP    PPA  + R+R A
Sbjct: 479 PAPPAPPPPPPPCPPAPPKTRSRQA 503

>gb|AAH58068.1| Unknown (protein for MGC:63802) [Danio rerio]
          Length = 896

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 39/123 (31%), Positives = 51/123 (40%), Gaps = 1/123 (0%)
 Frame = -2

Query: 418 SASRPA*RSRGWGSSSCRAPESPGCRHASGARRARSRCPSPCRPPRSPAPSARPARYNHR 239
           S + P  R R       R+P  PG RH S +   R R PSP  PPR  +PS  P R+   
Sbjct: 483 SPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSP--PPRRRSPSPPPRRFTPP 540

Query: 238 WRKGTEPPPQ*QCPCQ-GRPPGSP**TPGQATG*PSQRQPPGERWPPAYARARTRTAKQA 62
            ++   PP     P Q  R  GSP       +  P +R PP    PP    + +   K+ 
Sbjct: 541 IQRRYSPPS--PSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSP--PPKRRMSPSPPPKRR 596

Query: 61  SQP 53
             P
Sbjct: 597 KSP 599

 Score = 31.2 bits (69), Expect = 7.3
 Identities = 42/134 (31%), Positives = 52/134 (38%), Gaps = 3/134 (2%)
 Frame = -2

Query: 490  PPARRWSRPCRWSSPP*AWCPSWGSASRPA*RSRGWGSSSCRAPESPGCRHASGARRARS 311
            PPA +  R  R SSPP     +   +S P  R    GSS  R        H++   R  S
Sbjct: 711  PPAAQRGRDTR-SSPP---AHTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPIRRVS 766

Query: 310  RCPSPCRPPR---SPAPSARPARYNHRWRKGTEPPPQ*QCPCQGRPPGSP**TPGQATG* 140
            R P P +  R   SP P  R        R  +  PP    P Q RP      +P ++T  
Sbjct: 767  RTPEPRKSQRGSQSPPPERRQVS-----RSPSASPP----PAQKRPASV---SPSRST-- 812

Query: 139  PSQRQPPGERWPPA 98
               R PP    PPA
Sbjct: 813  --SRSPP----PPA 820



EST assemble image


clone accession position
1 HC085a08_r AV638331 1 318
2 HC018d01_r AV633233 9 495
3 CM009h07_r AV397683 12 453
4 HC034h03_r AV634552 14 489
5 MXL050f05_r BP095988 56 431




Chlamydomonas reinhardtii
Kazusa DNA Research Institute