KCC001008A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001008A_C01 KCC001008A_c01
CAAACGTAGAAGCTTTGGTATAGAAGGTTCGTCTAGACTACGTTCAGAGCTTCTCTCTTC
TTCAGACTAGGTGGAGCAGGCCCGGCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTC
AGAAGGAGCTGCAGGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGG
GCGATGATCTCTTCCACTGGCAGGCCACCATTATGGGCCCCAGCGACAGCCCCTACGCGG
GAGGCGTGTTCTTTGTAAACATTATGTTCCCTCCGGACTACCCGTTCAAGCCCCCGAAGG
TGACCTTCCAGACTAAGGTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGG
ACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGGTGCTGCTCTCGATCT
GCTCCTTGCTCACGGACCCCAACCCCGATGACCCGCTTGTGCCGGAGATCGCGCACATCT
ACAAGACCGACCGCCGGCGGTACGAGGAGACGGCGCGCGAGTGGACCCGCAAGTATGCCA
TGGGGCTAAGCGCGGGCGGCCCGCGTTGGGAGGAGGGTGGAGGCCTAGCAGCAGCGGCAG
CGCAGAGGAGGCAGCTGGCGTGGCGTGACCCCCTCATCCCGCGAACCGGCGGGCGAAGGC
GGCTGAGTGTAGCCGGCGGAGGAGCGAGGGGCTGGAGCAGACTTCTTGGCTGCTGTGTAG
GGTGGGAATGAACGCGGTGGCCGGAAGGATCCACTGGCCAGAAGGACCTTGGGCTCGCGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001008A_C01 KCC001008A_c01
         (780 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB88617.1| ubiquitin conjugating enzyme [Zea mays]                282  5e-75
dbj|BAB93371.1| ubiquitin conjugating enzyme [Oryza sativa (japo...   281  6e-75
emb|CAE02801.1| OSJNBa0043A12.6 [Oryza sativa (japonica cultivar...   281  8e-75
dbj|BAB89354.1| ubiquitin-conjugating enzyme OsUBC5a [Oryza sati...   281  1e-74
gb|AAD00911.1| putative ubiquitin conjugating enzyme [Pinus resi...   278  9e-74

>gb|AAB88617.1| ubiquitin conjugating enzyme [Zea mays]
          Length = 148

 Score =  282 bits (721), Expect = 5e-75
 Identities = 129/148 (87%), Positives = 140/148 (94%)
 Frame = +3

Query: 102 MASKRIQKELQDLQKDPPTSCSAGPAGDDLFHWQATIMGPSDSPYAGGVFFVNIMFPPDY 281
           MASKRI KEL+DLQKDPPTSCSAGPAG+D+FHWQATIMGP DSPYAGGVF VNI FPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDY 60

Query: 282 PFKPPKVTFQTKVYHPNVNSQGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV 461
           PFKPPKV+F+TKV+HPN+NS GSICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 462 PEIAHIYKTDRRRYEETAREWTRKYAMG 545
           PEIAH+YKTDR +YE TAR WT+KYAMG
Sbjct: 121 PEIAHMYKTDRPKYESTARSWTQKYAMG 148

>dbj|BAB93371.1| ubiquitin conjugating enzyme [Oryza sativa (japonica
           cultivar-group)] gi|21104787|dbj|BAB93374.1| ubiquitin
           conjugating enzyme [Oryza sativa (japonica
           cultivar-group)]
          Length = 148

 Score =  281 bits (720), Expect = 6e-75
 Identities = 129/148 (87%), Positives = 140/148 (94%)
 Frame = +3

Query: 102 MASKRIQKELQDLQKDPPTSCSAGPAGDDLFHWQATIMGPSDSPYAGGVFFVNIMFPPDY 281
           MASKRI KEL+DLQKDPPTSCSAGPAG+D+FHWQATIMGP DSPYAGGVF VNI FPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDY 60

Query: 282 PFKPPKVTFQTKVYHPNVNSQGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV 461
           PFKPPKV+F+TKV+HPN+NS GSICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 462 PEIAHIYKTDRRRYEETAREWTRKYAMG 545
           PEIAH+YKTDR +YE TAR WT+KYAMG
Sbjct: 121 PEIAHMYKTDRPKYETTARSWTQKYAMG 148

>emb|CAE02801.1| OSJNBa0043A12.6 [Oryza sativa (japonica cultivar-group)]
          Length = 148

 Score =  281 bits (719), Expect = 8e-75
 Identities = 128/148 (86%), Positives = 140/148 (94%)
 Frame = +3

Query: 102 MASKRIQKELQDLQKDPPTSCSAGPAGDDLFHWQATIMGPSDSPYAGGVFFVNIMFPPDY 281
           MASKRI KEL+DLQKDPPTSCSAGP G+D+FHWQATIMGPSDSP+AGGVF VNI FPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPFAGGVFLVNIHFPPDY 60

Query: 282 PFKPPKVTFQTKVYHPNVNSQGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV 461
           PFKPPKV+F+TKV+HPN+NS GSICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 462 PEIAHIYKTDRRRYEETAREWTRKYAMG 545
           PEIAH+YKTDR +YE TAR WT+KYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

>dbj|BAB89354.1| ubiquitin-conjugating enzyme OsUBC5a [Oryza sativa (japonica
           cultivar-group)]
          Length = 147

 Score =  281 bits (718), Expect = 1e-74
 Identities = 128/147 (87%), Positives = 138/147 (93%)
 Frame = +3

Query: 102 MASKRIQKELQDLQKDPPTSCSAGPAGDDLFHWQATIMGPSDSPYAGGVFFVNIMFPPDY 281
           MASKRIQKEL+DLQKDPPTSCSAGP G+D+FHWQATIMGPSDSPYAGGVF V I FPPDY
Sbjct: 1   MASKRIQKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60

Query: 282 PFKPPKVTFQTKVYHPNVNSQGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV 461
           PFKPPKV F+TKV+HPN+NS GSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 462 PEIAHIYKTDRRRYEETAREWTRKYAM 542
           PEIAH+YKTDR +YE TAR WT++YAM
Sbjct: 121 PEIAHMYKTDRHKYENTARTWTQRYAM 147

>gb|AAD00911.1| putative ubiquitin conjugating enzyme [Pinus resinosa]
          Length = 148

 Score =  278 bits (710), Expect = 9e-74
 Identities = 128/147 (87%), Positives = 136/147 (92%)
 Frame = +3

Query: 102 MASKRIQKELQDLQKDPPTSCSAGPAGDDLFHWQATIMGPSDSPYAGGVFFVNIMFPPDY 281
           MA+KRI KELQDLQ+DPP SCS GP GDDLFHWQATIMGP DSPYAGGVFF+ I FPPDY
Sbjct: 1   MAAKRITKELQDLQRDPPISCSTGPVGDDLFHWQATIMGPVDSPYAGGVFFIVIHFPPDY 60

Query: 282 PFKPPKVTFQTKVYHPNVNSQGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV 461
           PFKPPKVTF+TKVYHPNVNS GSICLDILK+QWSPALT+SKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVTFKTKVYHPNVNSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLV 120

Query: 462 PEIAHIYKTDRRRYEETAREWTRKYAM 542
           PEIAHIYK+ R RYEETAR WT+KYAM
Sbjct: 121 PEIAHIYKSQRARYEETARAWTQKYAM 147



EST assemble image


clone accession position
1 HC070c08_r AV637218 1 528
2 CM083a03_r AV392155 64 583
3 MX259d06_r BP092803 76 543
4 LC056e04_r AV622915 76 604
5 CM077c11_r AV391771 77 669
6 MX224a11_r BP090450 78 471
7 MX229c03_r BP090795 79 373
8 CM009h06_r AV397652 82 707
9 MX208b08_r BP089482 82 424
10 HC075g09_r AV637649 82 522
11 LC047e01_r AV621997 83 575
12 LC070f09_r AV623936 83 578
13 LC072f01_r AV624073 83 535
14 MX005f12_r BP086280 84 420
15 LC078h03_r AV624521 88 614
16 HC078e03_r AV637853 91 518
17 MX233c04_r BP091064 91 385
18 MX260e03_r BP092889 91 588
19 CM019d09_r AV387326 92 665
20 MX237g07_r BP091372 92 541
21 LC040a12_r AV621717 92 455
22 LC031c10_r AV621106 92 504
23 LC081a08_r AV624671 92 603
24 LC031g05_r AV621139 92 638
25 HC083d02_r AV638213 93 510
26 MX003b07_r BP086165 93 501
27 LC042g09_r AV621932 93 574
28 LC056a11_r AV622884 93 582
29 MX211c05_r BP089643 96 440
30 HC023e11_r AV633654 96 518
31 LC078h09_r AV624526 97 586
32 MX218f01_r BP090088 99 494
33 HC024d11_r AV633723 102 594
34 MX243c12_r BP091728 103 601
35 LC045g08_r AV622079 108 665
36 CM042h01_r AV389273 117 441
37 LC064c09_r AV623475 122 633
38 CM088e09_r AV393054 259 824
39 HC017h03_r AV633192 322 828
40 CM038g01_r AV389025 326 872
41 HC096a02_r AV639178 390 802
42 MX022g01_r BP087006 475 850




Chlamydomonas reinhardtii
Kazusa DNA Research Institute