Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001006A_C01 KCC001006A_c01
(554 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_003176.1| TBP-associated factor 4; TATA box binding prote... 45 8e-04
emb|CAC36006.1| bA11M20.1 (TATA box binding protein (TBP)-associ... 44 0.001
pir||EDBEIF immediate-early protein IE180 - suid herpesvirus 1 (... 42 0.005
sp|P20186|YT35_STRFR Hypothetical 35.5 kDa protein in transposon... 42 0.007
pir||G84693 probable proline-rich protein [imported] - Arabidops... 41 0.009
>ref|NP_003176.1| TBP-associated factor 4; TATA box binding protein (TBP)-associated
factor, RNA polymerase II, C1, 130kD; TAF4 RNA
polymerase II, TATA box binding protein (TBP)-associated
factor, 135 kD; TAF4A RNA polymerase II, TATA box
binding protein (TBP)-associated factor, 135 kD;
transcription initiation factor TFIID 135 kD subunit
[Homo sapiens] gi|3024681|sp|O00268|T2D3_HUMAN
Transcription initiation factor TFIID 135 kDa subunit
(TAFII-135) (TAFII135) (TAFII-130) (TAFII130)
gi|2058326|emb|CAA72189.1| subunit of RNA polymerase II
transcription factor TFIID [Homo sapiens]
Length = 1083
Score = 44.7 bits (104), Expect = 8e-04
Identities = 47/163 (28%), Positives = 63/163 (37%), Gaps = 6/163 (3%)
Frame = -1
Query: 551 AKDPARSGTQRRGAGPPLH*CTRSSRPTARRGRTPC-PAGFGVQTGSWLASPPPGQ---- 387
A +P +G R G G P R P+ RR P PA + L PP G
Sbjct: 86 APEPPPAGRARPGGGGP----QRPGPPSPRRPLVPAGPA----PPAAKLRPPPEGSAGAC 137
Query: 386 -PPPAPQQPAVGAHACPAARARRRGL*CCARKRGAAPPPLWSRQRGQGSRRHDVGRGPGR 210
P PA A G PA A+ G A + G P P G G G GPG+
Sbjct: 138 APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP------GPGP-----GPGPGK 186
Query: 209 KFGAAFYRSLCKSVSRLRQMASVAAPFSDMRSRPQAVRPIFRP 81
G ++L S + L + A S + + P A+ P+ +P
Sbjct: 187 PAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKP 229
>emb|CAC36006.1| bA11M20.1 (TATA box binding protein (TBP)-associated factor, RNA
polymerase II, C1, 130kD) [Homo sapiens]
Length = 628
Score = 44.3 bits (103), Expect = 0.001
Identities = 47/163 (28%), Positives = 63/163 (37%), Gaps = 6/163 (3%)
Frame = -1
Query: 551 AKDPARSGTQRRGAGPPLH*CTRSSRPTARRGRTPC-PAGFGVQTGSWLASPPPGQ---- 387
A +P +G R G G P R P+ RR P PA + L PP G
Sbjct: 86 APEPPPAGRARPGGGGP----QRPGPPSPRRPLVPAGPA----PPAAKLRPPPEGSAGSC 137
Query: 386 -PPPAPQQPAVGAHACPAARARRRGL*CCARKRGAAPPPLWSRQRGQGSRRHDVGRGPGR 210
P PA A G PA A+ G A + G P P G G G GPG+
Sbjct: 138 APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP------GPGP---GPGPGPGK 188
Query: 209 KFGAAFYRSLCKSVSRLRQMASVAAPFSDMRSRPQAVRPIFRP 81
G ++L S + L + A S + + P A+ P+ +P
Sbjct: 189 PAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKP 231
>pir||EDBEIF immediate-early protein IE180 - suid herpesvirus 1 (strain
Indiana-Funkhauser)
Length = 1460
Score = 42.0 bits (97), Expect = 0.005
Identities = 44/135 (32%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
Frame = -1
Query: 527 TQRRGAGP-PLH*CTRSSRPTARRGRTPCPAGFGVQTGSWLASPPPGQPPPAPQQPAVGA 351
T G GP P R R ++R R PA G + PP QPP P PA A
Sbjct: 133 TSSSGPGPGPAPGPGRRPRQHSQRQRPGPPAAPGAR--------PPPQPPRPPPPPAPPA 184
Query: 350 HACPAARARRRGL*CCARKRGAAPPPLWSRQRGQGSRRHDVG--RGPGRKFGAAFYRSLC 177
P A R RG RG R+RG G RRH R P R+ G
Sbjct: 185 PPAPPAPRRPRG---DGPPRGGTRSVSPGRRRGLGPRRHQHSQQRWPQRRHGGGPLPQPP 241
Query: 176 KSVSRLRQMASVAAP 132
R R+ A+ A P
Sbjct: 242 PPPGRSRRPAAAAPP 256
>sp|P20186|YT35_STRFR Hypothetical 35.5 kDa protein in transposon Tn4556
gi|80759|pir||JQ0431 hypothetical 35.5K protein -
Streptomyces fradiae transposon Tn4556
gi|1196912|gb|AAA88561.1| unknown protein [Streptomyces
fradiae]
Length = 348
Score = 41.6 bits (96), Expect = 0.007
Identities = 37/121 (30%), Positives = 49/121 (39%), Gaps = 17/121 (14%)
Frame = -1
Query: 548 KDPARSGTQRRGAGPPLH*CTR--------SSRPTARRGRTPCPAGFGVQTGSWLASPPP 393
+ PA S + + A P TR + RP++R R P PA A PPP
Sbjct: 236 RPPASSASSPQAAAPAAPSATRLPRRTTPSAPRPSSRPARPPIPA----------ARPPP 285
Query: 392 GQPPPAPQQPAVGAHA---------CPAARARRRGL*CCARKRGAAPPPLWSRQRGQGSR 240
+ P P+ A A A P+A RR C A +RG+ PP QG+R
Sbjct: 286 RRTPGTPRPAAARARAPAGCSPARRTPSAPTDRR---CRAARRGSPRPPAARPPGRQGTR 342
Query: 239 R 237
R
Sbjct: 343 R 343
Score = 33.9 bits (76), Expect = 1.5
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = +3
Query: 156 PQPADRFAKAPIECCTEFPARPPAHVVPAAALPSLP*PQRRRCRAPLSRAALQPAPARTS 335
P+P+ R A+ PI P R P PAAA R RAP + + P+ +
Sbjct: 267 PRPSSRPARPPIPAARPPPRRTPGTPRPAAA----------RARAPAGCSPARRTPSAPT 316
Query: 336 SRACVCPNCRLLRRRRGLPRRRRSEP 413
R C RRG PR + P
Sbjct: 317 DRRC-------RAARRGSPRPPAARP 335
>pir||G84693 probable proline-rich protein [imported] - Arabidopsis thaliana
gi|3980411|gb|AAC95214.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 891
Score = 41.2 bits (95), Expect = 0.009
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 10/156 (6%)
Frame = -1
Query: 548 KDPARSGTQRRGAGPPLH*CTRSSRPTARRGRTPCPAGFGVQTGSWLASPPPGQPPPAPQ 369
+ PA S +RR PP RS P ARR R+P P ++ + PP + +P
Sbjct: 315 QSPAPS-RRRRSPSPPAR-RRRSPSPPARRRRSPSPPARRHRSPT-----PPARQRRSPS 367
Query: 368 QPAVGAHACPAARARRRGL*CCARKRGAAPP--------PLWSRQRGQGS-RRHDVGRGP 216
PA + P AR RR R+R +PP PL+ R R R + R P
Sbjct: 368 PPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSP 427
Query: 215 GRKFGAAFYRSLCKS-VSRLRQMASVAAPFSDMRSR 111
K G + S V+RLR P + R
Sbjct: 428 LAKRGRSDSPGRSPSPVARLRDPTGARLPSPSIEQR 463
Score = 35.0 bits (79), Expect = 0.67
Identities = 40/133 (30%), Positives = 50/133 (37%), Gaps = 6/133 (4%)
Frame = +3
Query: 39 RATQPVNTRLATFERPKDRT--NGLRT*THVGERCSHA----RHLPQPADRFAKAPIECC 200
R+ P R+ + R + R+ R TH G R S A R P P R ++P
Sbjct: 281 RSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSP-- 338
Query: 201 TEFPARPPAHVVPAAALPSLP*PQRRRCRAPLSRAALQPAPARTSSRACVCPNCRLLRRR 380
PAR P A P P R+ R+P A +P R P R RR
Sbjct: 339 ---PARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPAR-RRRS 394
Query: 381 RGLPRRRRSEPRP 419
P RRR P P
Sbjct: 395 PSPPARRRRSPSP 407
