KCC001002A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001002A_C01 KCC001002A_c01
gcacgagACTAGCTCTGCTCACTCGTCAAGCTCTGCGGGCGGGCTCGCTCTGCAATCGCG
TGGCTGCGTCGAGGCCGGCCAAGCCGCTCGTCGTCGGCCGCCCACCTGTCACCCAGCGTT
TCCTGGCAGTGGTTGGCGCCGCCCCCAAGGGCAAGGCGCCTCCGCCGCCTCCCCCCGAGG
AGGCCGACCTGGAGGACGAGCTGGGCGAGGGCGATGAGGACTACTACGACCCCATGGAGG
AGCTCAACACCGCCCAGCGCCGCCGCGTGCTGGCCATGAAGGAGGTGCAGGGCCGCTACG
ACGGCCTGCAGCGGGAGTACCAGGCCGAGCTGGCGCAGCTGCAGAGCAAGTACAACACCA
AGTACGCCCCCCTGTACGACGAGCGCCGTGAGCTGTTCAGCGGCAAGAAGGCTGTCACCG
ACAAGTTCGACCTGGAGGACGACGGCGAGCCGGACGGCCCCATCCCCGACTTCTGGCTGA
ACGCCCTTGCCAACCACAACAAGATCGGCCCCTTCATCACCGAACGCGACAGCGAGGTGC
TGAAGTACCTAGAGGACATCCGCAGTGAGGTGCTGGTGGGCGAGGAGCGCGGCTTCAAGC
TGACCTTCCACTTCAAGGCCGACAACCCCCACTTCACCAACTCGGTCCTGGAGAAGGTTT
ACGTGCTGGAGCCCGAGGACGACGTGGTGCCCAAGGCCTTCACCGGCACCGTCATCAGCT
GGAAGGAGGGCCGCGACGTGACCGTGGAGGAGCAGAAGCGCCGGGTCAAGGCGCCCAAGG
GCGACAAGTCCAAGCCGGCGTTTGTGGTGGAGAAGGTGCCCTGCGACTCCCTCTTCACCA
TTTTCGACCCGCCCAAGGTGCCCACGGAGGCCGATGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001002A_C01 KCC001002A_c01
         (877 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T06807 nucleosome assembly protein 1 - garden pea gi|177837...   139  8e-32
pir||S60892 nucleosome assembly protein 1 - soybean gi|1161252|g...   134  2e-30
gb|AAM77038.1| nucleosome/chromatin assembly factor group A [Zea...   134  2e-30
ref|XP_327877.1| hypothetical protein [Neurospora crassa] gi|289...   134  2e-30
emb|CAD70974.1| probable nucleosome assembly protein I [Neurospo...   134  2e-30

>pir||T06807 nucleosome assembly protein 1 - garden pea
           gi|1778378|gb|AAB72115.1| NAP1Ps [Pisum sativum]
          Length = 366

 Score =  139 bits (349), Expect = 8e-32
 Identities = 83/219 (37%), Positives = 130/219 (58%), Gaps = 5/219 (2%)
 Frame = +3

Query: 228 DPMEELNTAQRRRVLAMKEVQGRYDGLQREYQAELAQLQSKYNTKYAPLYDERRELFSGK 407
           D +E L+   R+RV  ++E+QG +D L+ ++  E A L++KY   Y PLY +R ++ +G 
Sbjct: 42  DVLESLSPVVRKRVEVLREIQGEHDELEAKFLEERAALEAKYQILYQPLYTKRYDIVNGV 101

Query: 408 KAV----TDKFDLEDDGEPDGPIPDFWLNALANHNKIGPFITERDSEVLKYLEDIRSEVL 575
             V     +    E+D E    +P FWLNA+ N++  G  ITERD   LK+L+DI+    
Sbjct: 102 AEVVGVRVETAVAEEDKEKG--VPSFWLNAMKNNDVGGEEITERDEGALKFLKDIK-WTR 158

Query: 576 VGEERGFKLTFHFKADNPHFTNSVLEKVYVLEPEDDVVPKAFTGTVISWKEGRDVTVEEQ 755
           + E +GFKL F F + NP+F+NSVL K+Y +  ED+ + +   GT I W  G+ +T +  
Sbjct: 159 IEEPKGFKLEFFFDS-NPYFSNSVLTKIYHMVDEDEPILEKAIGTEIQWLPGKCLTQKVL 217

Query: 756 KRRVKAPKGDK-SKPAFVVEKVPCDSLFTIFDPPKVPTE 869
           K++ K  KG K +KP  + +   C+S F  F+PP+VP +
Sbjct: 218 KKKPK--KGAKNAKP--ITKTETCESFFNFFNPPEVPED 252

>pir||S60892 nucleosome assembly protein 1 - soybean gi|1161252|gb|AAA88792.1|
           nucleosome assembly protein 1
          Length = 358

 Score =  134 bits (338), Expect = 2e-30
 Identities = 78/219 (35%), Positives = 129/219 (58%), Gaps = 5/219 (2%)
 Frame = +3

Query: 228 DPMEELNTAQRRRVLAMKEVQGRYDGLQREYQAELAQLQSKYNTKYAPLYDERRELFSG- 404
           D +E L+   R+RV +++E+QG++D L+ ++  E   L++KY   Y PLY +R E+ +G 
Sbjct: 40  DVLETLSPNVRKRVESLREIQGKHDELEADFLKEREALEAKYQKLYQPLYTKRYEIVNGV 99

Query: 405 ---KKAVTDKFDLEDDGEPDGPIPDFWLNALANHNKIGPFITERDSEVLKYLEDIRSEVL 575
              + A  +  D  ++ +  G +P FWLNA+ N++ +   I+ERD   LK+L+DI+    
Sbjct: 100 TEVEGAANESTDESEENKEKG-VPSFWLNAMENNDVLAEEISERDEGALKFLKDIKWS-R 157

Query: 576 VGEERGFKLTFHFKADNPHFTNSVLEKVYVLEPEDDVVPKAFTGTVISWKEGRDVTVEEQ 755
           +   +GFKL F F   NP+F+N+VL K Y +  ED+ + +   GT I W  G+ +T +  
Sbjct: 158 IENPKGFKLDFFFDT-NPYFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVL 216

Query: 756 KRRVKAPKGDK-SKPAFVVEKVPCDSLFTIFDPPKVPTE 869
           K++ K  KG K +KP  + +   C+S F  F PP+VP +
Sbjct: 217 KKKPK--KGSKNAKP--ITKTESCESFFNFFKPPEVPED 251

>gb|AAM77038.1| nucleosome/chromatin assembly factor group A [Zea mays]
          Length = 370

 Score =  134 bits (337), Expect = 2e-30
 Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 16/230 (6%)
 Frame = +3

Query: 228 DPMEELNTAQRRRVLAMKEVQGRYDGLQREYQAELAQLQSKYNTKYAPLYDERRELFSG- 404
           D +E L    R+RV  ++E+QG +D L+ ++  E A L++KY   Y PLY +R E+ +G 
Sbjct: 48  DVLENLEPKVRKRVEKLREIQGEHDELEAKFFEERAALEAKYQKLYEPLYSKRYEIVNGV 107

Query: 405 -------KKAVTDKFDLEDDGE-------PDGPIPDFWLNALANHNKIGPFITERDSEVL 542
                  K++  +  + +  G+        +  +P FWLNA+ NH  +   I ERD E L
Sbjct: 108 VEIEGITKESAAETPEEQKSGDETSAEQKEEKGVPAFWLNAMKNHEILAEEIQERDEEAL 167

Query: 543 KYLEDIRSEVLVGEERGFKLTFHFKADNPHFTNSVLEKVYVLEPEDDVVPKAFTGTVISW 722
           KYL+DI+    + E +GFKL FHF   N  F NSVL K Y +  ED+ + +   GT I W
Sbjct: 168 KYLKDIK-WYRISEPKGFKLEFHF-GTNMFFKNSVLTKTYHMIDEDEPILEKAIGTEIEW 225

Query: 723 KEGRDVTVEEQKRRVKAPKGDK-SKPAFVVEKVPCDSLFTIFDPPKVPTE 869
             G+ +T +  K+  K  KG K +KP  + +   C+S F  F PP+VP +
Sbjct: 226 YPGKCLTQKVLKK--KPRKGSKNTKP--ITKTEDCESFFNFFSPPQVPDD 271

>ref|XP_327877.1| hypothetical protein [Neurospora crassa] gi|28917037|gb|EAA26762.1|
           hypothetical protein [Neurospora crassa]
          Length = 411

 Score =  134 bits (337), Expect = 2e-30
 Identities = 86/242 (35%), Positives = 126/242 (51%), Gaps = 28/242 (11%)
 Frame = +3

Query: 234 MEELNTAQRRRVLAMKEVQGRYDGLQREYQAELAQLQSKYNTKYAPLYDERRELFSGKKA 413
           +E L T  +RRV  +K +Q  +  L+ E+Q E+ QL+ KY  K+ PLY +R  + +G+  
Sbjct: 83  IESLPTDVKRRVAGLKGIQKEHSKLEAEFQEEVLQLEKKYFAKFTPLYQQRAAIVNGQTE 142

Query: 414 VTD---KFDLEDDGEPD-------------------GPIPDFWLNALANHNKIGPFITER 527
            T+   +   ED+ E D                     IP+FWL+A+ N   +   IT+R
Sbjct: 143 PTEDQVQAGEEDEEEEDEETEAAPQEEKATESAEKVSGIPEFWLSAMKNQISLAEMITDR 202

Query: 528 DSEVLKYLEDIRSEVLVGEERGFKLTFHFKADNPHFTNSVLEKVYVLEPED----DVVPK 695
           D E LK L DIR E L  ++ GF+L F F A+N +FTN  + K Y  + E     D +  
Sbjct: 203 DEEALKSLTDIRMEYL--DKPGFRLIFEF-AENEYFTNKTITKTYYYQNESGYGGDFIYD 259

Query: 696 AFTGTVISWKEGRDVT--VEEQKRRVKAPKGDKSKPAFVVEKVPCDSLFTIFDPPKVPTE 869
              G  I+WKE +D+T  VE++K+R K  K    +   V + VP +S F  F PPK PT+
Sbjct: 260 HAEGDKINWKEDKDLTVRVEQKKQRNKTTK----QTRIVKKTVPTESFFNFFSPPKAPTD 315

Query: 870 AD 875
            D
Sbjct: 316 DD 317

>emb|CAD70974.1| probable nucleosome assembly protein I [Neurospora crassa]
          Length = 407

 Score =  134 bits (337), Expect = 2e-30
 Identities = 86/242 (35%), Positives = 126/242 (51%), Gaps = 28/242 (11%)
 Frame = +3

Query: 234 MEELNTAQRRRVLAMKEVQGRYDGLQREYQAELAQLQSKYNTKYAPLYDERRELFSGKKA 413
           +E L T  +RRV  +K +Q  +  L+ E+Q E+ QL+ KY  K+ PLY +R  + +G+  
Sbjct: 79  IESLPTDVKRRVAGLKGIQKEHSKLEAEFQEEVLQLEKKYFAKFTPLYQQRAAIVNGQTE 138

Query: 414 VTD---KFDLEDDGEPD-------------------GPIPDFWLNALANHNKIGPFITER 527
            T+   +   ED+ E D                     IP+FWL+A+ N   +   IT+R
Sbjct: 139 PTEDQVQAGEEDEEEEDEETEAAPQEEKATESAEKVSGIPEFWLSAMKNQISLAEMITDR 198

Query: 528 DSEVLKYLEDIRSEVLVGEERGFKLTFHFKADNPHFTNSVLEKVYVLEPED----DVVPK 695
           D E LK L DIR E L  ++ GF+L F F A+N +FTN  + K Y  + E     D +  
Sbjct: 199 DEEALKSLTDIRMEYL--DKPGFRLIFEF-AENEYFTNKTITKTYYYQNESGYGGDFIYD 255

Query: 696 AFTGTVISWKEGRDVT--VEEQKRRVKAPKGDKSKPAFVVEKVPCDSLFTIFDPPKVPTE 869
              G  I+WKE +D+T  VE++K+R K  K    +   V + VP +S F  F PPK PT+
Sbjct: 256 HAEGDKINWKEDKDLTVRVEQKKQRNKTTK----QTRIVKKTVPTESFFNFFSPPKAPTD 311

Query: 870 AD 875
            D
Sbjct: 312 DD 313



EST assemble image


clone accession position
1 CM054d01_r AV389983 1 318
2 MX017a02_r BP086798 7 479
3 CM009e11_r AV397654 17 644
4 HC047d01_r AV635517 218 727
5 HC020f03_r AV633421 313 786
6 HC022f01_r AV633583 325 798
7 HC085a11_r AV638334 367 877




Chlamydomonas reinhardtii
Kazusa DNA Research Institute