KCC001001A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001001A_C01 KCC001001A_c01
tcaGTCCGAACAACCCACTTACAATCATGGCCCTCTCTATGAAGATGCGCGCCAACGCGC
GCGTGGTGTCCGGTCGCCGCGTCGCCGCTGTGGCCCCCCGCGTGGTGCCCTTCTCGTCGG
CCTCCAGCTCCGTGCTGCGCTCTGGCTTCGCCGCTGAGGTGTCTGTGGACATCCGCCGCG
TGGGCCGCTCTCGCATCGTCGTCGAGGCGGTGAAGAAGTCGGTTGGCGACCTGCACAAGG
CTGACCTGGAGGGCAAGCGCGTGTTCGTCCGCGCGGACCTGAACGTGCCTCTTGACAAGG
CCACCCTGGCCATCACCGACGACACCCGCATTCGCGCGGCCGTCCCCACCCTGAAGTACC
TGCTGGACAACGGTGCTAAGGTCCTGCTGACCTCGCACCTGGGTCGCCCGAAGGGCGGTC
CCGAGGACAAGTACCGCCTGACCCCCGTGGTGGCCCGCCTGTCGGAGCTGCTGGGCAAGC
CCGTGAACAAGGTCGATGACTGCATCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001001A_C01 KCC001001A_c01
         (507 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9SBN4|PGKH_VOLCA Phosphoglycerate kinase, chloroplast precur...   281  4e-75
sp|P41758|PGKH_CHLRE Phosphoglycerate kinase, chloroplast precur...   262  2e-69
ref|NP_187884.1| phosphoglycerate kinase -related [Arabidopsis t...   139  2e-32
dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra]   135  2e-31
pir||T07014 phosphoglycerate kinase (EC 2.7.2.3) precursor, chlo...   135  3e-31

>sp|Q9SBN4|PGKH_VOLCA Phosphoglycerate kinase, chloroplast precursor
           gi|5902588|gb|AAD55564.1|AF110782_1 phosphoglycerate
           kinase precursor [Volvox carteri f. nagariensis]
          Length = 462

 Score =  281 bits (718), Expect = 4e-75
 Identities = 148/160 (92%), Positives = 150/160 (93%)
 Frame = +3

Query: 27  MALSMKMRANARVVSGRRVAAVAPRVVPFSSASSSVLRSGFAAEVSVDIRRVGRSRIVVE 206
           MALSMKMRANARVVSGRRVAAVAPRVVPFSS +  VLRS FA EVS+DIRR GRSRIVVE
Sbjct: 1   MALSMKMRANARVVSGRRVAAVAPRVVPFSSVARPVLRSTFAPEVSIDIRRAGRSRIVVE 60

Query: 207 AVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVL 386
           AVKKSVGDL KADLEGKRVFVRADLNVPLDK TLAITDDTRIRAAVPTLKYLLDNGAKVL
Sbjct: 61  AVKKSVGDLGKADLEGKRVFVRADLNVPLDKKTLAITDDTRIRAAVPTLKYLLDNGAKVL 120

Query: 387 LTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVNKVDDCI 506
           LTSHLGRPKGGPEDKYRLTPVVARLSELLGK V KVDDCI
Sbjct: 121 LTSHLGRPKGGPEDKYRLTPVVARLSELLGKEVKKVDDCI 160

>sp|P41758|PGKH_CHLRE Phosphoglycerate kinase, chloroplast precursor
           gi|7434543|pir||T08041 phosphoglycerate kinase (EC
           2.7.2.3) precursor, chloroplast - Chlamydomonas
           reinhardtii gi|642454|gb|AAA70082.1| phosphoglycerate
           kinase precursor
          Length = 461

 Score =  262 bits (670), Expect = 2e-69
 Identities = 143/160 (89%), Positives = 143/160 (89%)
 Frame = +3

Query: 27  MALSMKMRANARVVSGRRVAAVAPRVVPFSSASSSVLRSGFAAEVSVDIRRVGRSRIVVE 206
           MALSMKMRANARV SGRRVAAVAPRVVPFSSASSSVLRSGFA               VVE
Sbjct: 1   MALSMKMRANARV-SGRRVAAVAPRVVPFSSASSSVLRSGFALRCLWTSAAWAALASVVE 59

Query: 207 AVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVL 386
           AVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVL
Sbjct: 60  AVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVL 119

Query: 387 LTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVNKVDDCI 506
           LTSHLGRPKGGPEDKYRLTPVVARLSELLGKPV KVDDCI
Sbjct: 120 LTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVTKVDDCI 159

>ref|NP_187884.1| phosphoglycerate kinase -related [Arabidopsis thaliana]
           gi|7839389|gb|AAF70258.1|AF247558_1 phosphoglycerate
           kinase [Arabidopsis thaliana]
           gi|11994421|dbj|BAB02423.1| phosphoglycerate kinase
           [Arabidopsis thaliana]
           gi|13430644|gb|AAK25944.1|AF360234_1 putative
           phosphoglycerate kinase [Arabidopsis thaliana]
           gi|15010644|gb|AAK73981.1| AT3g12780/MBK21_14
           [Arabidopsis thaliana]
           gi|16226508|gb|AAL16186.1|AF428418_1 AT3g12780/MBK21_14
           [Arabidopsis thaliana] gi|16648943|gb|AAL24323.1|
           phosphoglycerate kinase [Arabidopsis thaliana]
           gi|17065610|gb|AAL33785.1| putative phosphoglycerate
           kinase [Arabidopsis thaliana] gi|20334796|gb|AAM16259.1|
           AT3g12780/MBK21_14 [Arabidopsis thaliana]
           gi|21387107|gb|AAM47957.1| phosphoglycerate kinase
           [Arabidopsis thaliana] gi|22022520|gb|AAM83218.1|
           AT3g12780/MBK21_14 [Arabidopsis thaliana]
          Length = 481

 Score =  139 bits (351), Expect = 2e-32
 Identities = 82/140 (58%), Positives = 98/140 (69%)
 Frame = +3

Query: 87  AVAPRVVPFSSASSSVLRSGFAAEVSVDIRRVGRSRIVVEAVKKSVGDLHKADLEGKRVF 266
           +V+ R + FS+   S   S   A     +R  G SR VV   KKSVGDL  ADL+GK+VF
Sbjct: 38  SVSARPLGFSATLDSRRFSLHVASKVESVRGKG-SRGVVSMAKKSVGDLTSADLKGKKVF 96

Query: 267 VRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTP 446
           VRADLNVPLD     ITDDTRIRAA+PT+KYL++NGAKV+L++HLGRPK G   K+ L P
Sbjct: 97  VRADLNVPLDD-NQTITDDTRIRAAIPTIKYLIENGAKVILSTHLGRPK-GVTPKFSLAP 154

Query: 447 VVARLSELLGKPVNKVDDCI 506
           +V RLSELLG  V K DDCI
Sbjct: 155 LVPRLSELLGIEVTKADDCI 174

>dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra]
          Length = 481

 Score =  135 bits (341), Expect = 2e-31
 Identities = 88/161 (54%), Positives = 105/161 (64%), Gaps = 4/161 (2%)
 Frame = +3

Query: 36  SMKMRANARVVSGRRVAAVAPRVVPFSSASSSVLRSGFAAEVSVDIRRV---GRS-RIVV 203
           S   RA+   VS   +   + R + FS+A        F++ V   IR     GR+ R VV
Sbjct: 21  STSARASLLPVSTSGLRTTSLRGLGFSAADPL-----FSSHVVSKIRSFKSNGRAPRAVV 75

Query: 204 EAVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKV 383
              KKSVGDL  ADL+GK+VFVRADLNVPLD+    ITDDTRIRAAVPT+KYL+  GAKV
Sbjct: 76  SMAKKSVGDLTAADLKGKKVFVRADLNVPLDE-NQKITDDTRIRAAVPTIKYLISKGAKV 134

Query: 384 LLTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVNKVDDCI 506
           +L+SHLGRPK G   K+ L P+V RLSELLG  V K DDCI
Sbjct: 135 ILSSHLGRPK-GVTPKFSLAPLVPRLSELLGIQVVKADDCI 174

>pir||T07014 phosphoglycerate kinase (EC 2.7.2.3) precursor, chloroplast -
           potato gi|3328122|gb|AAC26785.1| phosphoglycerate kinase
           precursor [Solanum tuberosum]
          Length = 482

 Score =  135 bits (340), Expect = 3e-31
 Identities = 77/124 (62%), Positives = 90/124 (72%), Gaps = 4/124 (3%)
 Frame = +3

Query: 147 FAAEVSVDIRRVGRS----RIVVEAVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAI 314
           F   V+  +R +  S    R VV   KKSVGDL  +DL+GK+VFVRADLNVPLD A   I
Sbjct: 53  FTNHVATKLRSLKASSNPVRAVVSMAKKSVGDLSSSDLKGKKVFVRADLNVPLDDAQ-NI 111

Query: 315 TDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVNKV 494
           TDDTRIRAA+PT+K+L+ NGAKV+L+SHLGRPK G   KY L P+V RLSELLG  V K 
Sbjct: 112 TDDTRIRAAIPTIKHLIANGAKVILSSHLGRPK-GVTPKYSLAPLVPRLSELLGIQVVKA 170

Query: 495 DDCI 506
           DDCI
Sbjct: 171 DDCI 174



EST assemble image


clone accession position
1 MXL079e12_r BP097682 1 458
2 HC045a11_r AV635336 4 387
3 MXL084b03_r BP097956 4 352
4 MXL074e01_r BP097362 6 379
5 CM009e08_r AV397674 16 569
6 HCL042b02_r AV641898 25 372
7 HCL068b03_r AV643350 29 507
8 MX028f06_r BP087235 34 380




Chlamydomonas reinhardtii
Kazusa DNA Research Institute