KCC000996A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000996A_C01 KCC000996A_c01
tatactaaaCTCGGCCTGAAACAACCATTGCCAGGGTTTCACTCACAGCGCAACACCCTC
GAGCCCGGTCCCGGTGCCTGCACCCCGTTGCAATGTCATGCTGCTGCTGCTGTGTGTGCC
CCGCCCAGGAGACGGTGGCCATCGTCGAGAACTGTGGTAAATTCAGCCATATCGCACACC
CGGGCTTCAACTGCCTGCTGTGCTGCTTGGGCGCGAGTGTGGCCGGCTCTTTGTCGCTGC
GTGTACAGCAGCTGGATGTCAAGTGCGAGACCAAGACCAAGGATAACGTCTTCGTGAACC
TGGTCGTGAGTGTGCAGTACCAGGTCCAGCGTGAGGCGGTCTACGACGCCTACTACAGGC
TGACGGACAGCAGGCAGCAGATCTCGGCCTACGTGTTTGATGAGGTGCGCGCGGCTGTGC
CCAAGATGAGCCTGGACGACACGTACGAGCTCAAGGACGAGATCGCCAAGGGCATCAAGG
ACGCACTGGCCAAGTCCATGTCCGAGTACGGCTACCTGATCATCCACGTCCTGGTGAACG
ACATCGAGCCCGCCCACAAGGTGAAGGAGGCCATGAACGAAATCAACGCGGCGCGGCGGA
TGCGCGTTGCGGCGGCGGAGAAGGCGGAGGCGGAGAAGGTGGCGGTGGTCAAGAGCGCAG
AGGCGGAGGCGGAGGCCAAGTTCCTGCAGGGCCAGGGTATCGCGCGCCAGCGCCAGGCCA
TCATCAGCGGGCTGCGCGATTCGGTGTCGGACTTCCAGAACGGCGTCGTCGACATCAGCT
CCAAGGAGGTGCTCAGCCTCATGCTGCTGACGCAGTACTTCGACACGCTCAGGGACTGGG
TGCGCCAAACGCGCCTCCACAGTATTCTCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000996A_C01 KCC000996A_c01
         (871 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN17462.1| hypersensitive-induced reaction protein 1 [Hordeu...   290  3e-77
gb|AAK54610.1|AF374475_1 hypersensitive-induced response protein...   284  1e-75
ref|NP_177142.1| expressed protein [Arabidopsis thaliana] gi|306...   284  2e-75
gb|AAF68391.1|AF236375_1 hypersensitive-induced response protein...   283  3e-75
ref|NP_201080.1| hypersensitive-induced response protein [Arabid...   283  3e-75

>gb|AAN17462.1| hypersensitive-induced reaction protein 1 [Hordeum vulgare subsp.
           vulgare] gi|23345052|gb|AAN17457.1|
           hypersensitive-induced reaction protein 1 [Hordeum
           vulgare]
          Length = 284

 Score =  290 bits (741), Expect = 3e-77
 Identities = 146/237 (61%), Positives = 182/237 (76%)
 Frame = +3

Query: 126 QETVAIVENCGKFSHIAHPGFNCLLCCLGASVAGSLSLRVQQLDVKCETKTKDNVFVNLV 305
           Q TVAI E  GKF  I  PG +CL  CLG  VAG LSLRVQQLDV+CETKTKDNVFVN+V
Sbjct: 12  QSTVAIKETFGKFDAILQPGCHCLPWCLGQQVAGYLSLRVQQLDVRCETKTKDNVFVNVV 71

Query: 306 VSVQYQVQREAVYDAYYRLTDSRQQISAYVFDEVRAAVPKMSLDDTYELKDEIAKGIKDA 485
            SVQY+   +   DA+YRL+++R+QI +YVFD +RA+VPKM+LDD +E K+EIA+ +++ 
Sbjct: 72  ASVQYRALADKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDVFEQKNEIARAVEEE 131

Query: 486 LAKSMSEYGYLIIHVLVNDIEPAHKVKEAMNEINAARRMRVAAAEKAEAEKVAVVKSAEA 665
           L K+MS YGY I+  L+ DIEP   VK AMNEINAA RMR+AA EKAEAEK+  +K AE 
Sbjct: 132 LEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEG 191

Query: 666 EAEAKFLQGQGIARQRQAIISGLRDSVSDFQNGVVDISSKEVLSLMLLTQYFDTLRD 836
           EAE+K+L G GIARQRQAI+ GLRDSV  F   V   SSK+V+ ++L+TQYFDT++D
Sbjct: 192 EAESKYLAGVGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKD 248

>gb|AAK54610.1|AF374475_1 hypersensitive-induced response protein [Oryza sativa]
          Length = 284

 Score =  284 bits (727), Expect = 1e-75
 Identities = 142/237 (59%), Positives = 182/237 (75%)
 Frame = +3

Query: 126 QETVAIVENCGKFSHIAHPGFNCLLCCLGASVAGSLSLRVQQLDVKCETKTKDNVFVNLV 305
           Q TVAI E+ GKF  +  PG + L  C+G  +AG LSLRVQQLDV+CETKTKDNVFVN+V
Sbjct: 12  QSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCETKTKDNVFVNVV 71

Query: 306 VSVQYQVQREAVYDAYYRLTDSRQQISAYVFDEVRAAVPKMSLDDTYELKDEIAKGIKDA 485
            SVQY+   E   DA+YRL+++R+QI +YVFD +RA+VPKM+LDD +E K+EIAK ++D 
Sbjct: 72  ASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQKNEIAKAVEDE 131

Query: 486 LAKSMSEYGYLIIHVLVNDIEPAHKVKEAMNEINAARRMRVAAAEKAEAEKVAVVKSAEA 665
           L K+MS YGY I+  L+ DIEP   VK AMNEINAA R+RVAA EKAEAEK+  +K AE 
Sbjct: 132 LEKAMSTYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEG 191

Query: 666 EAEAKFLQGQGIARQRQAIISGLRDSVSDFQNGVVDISSKEVLSLMLLTQYFDTLRD 836
           +AE+K+L G GIARQRQAI+ GLRDSV  F   V   S+K+V+ ++L+TQYFDT+++
Sbjct: 192 DAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKE 248

>ref|NP_177142.1| expressed protein [Arabidopsis thaliana]
           gi|30697929|ref|NP_849870.1| expressed protein
           [Arabidopsis thaliana] gi|25404843|pir||F96720 unknown
           protein, 58197-59415 [imported] - Arabidopsis thaliana
           gi|12325226|gb|AAG52556.1|AC010675_4 unknown protein;
           58197-59415 [Arabidopsis thaliana]
           gi|20466748|gb|AAM20691.1| unknown protein [Arabidopsis
           thaliana] gi|23198256|gb|AAN15655.1| unknown protein
           [Arabidopsis thaliana]
          Length = 286

 Score =  284 bits (726), Expect = 2e-75
 Identities = 143/252 (56%), Positives = 186/252 (73%)
 Frame = +3

Query: 111 CVCPAQETVAIVENCGKFSHIAHPGFNCLLCCLGASVAGSLSLRVQQLDVKCETKTKDNV 290
           C+   Q  VAI E  GKF  +  PG +CL  CLG+ VAG LSLRVQQLDV+CETKTKDNV
Sbjct: 7   CIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCETKTKDNV 66

Query: 291 FVNLVVSVQYQVQREAVYDAYYRLTDSRQQISAYVFDEVRAAVPKMSLDDTYELKDEIAK 470
           FV +V S+QY+   E+  DA+Y+L+++R QI AYVFD +RA+VPK+ LD T+E K++IAK
Sbjct: 67  FVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQKNDIAK 126

Query: 471 GIKDALAKSMSEYGYLIIHVLVNDIEPAHKVKEAMNEINAARRMRVAAAEKAEAEKVAVV 650
            ++  L K+MS YGY I+  L+ DIEP   VK AMNEINAA RMR AA+EKAEAEK+  +
Sbjct: 127 TVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEAEKILQI 186

Query: 651 KSAEAEAEAKFLQGQGIARQRQAIISGLRDSVSDFQNGVVDISSKEVLSLMLLTQYFDTL 830
           K AE EAE+K+L G GIARQRQAI+ GLR+SV  F   V   SSK+V+ ++L+TQYFDTL
Sbjct: 187 KRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVTQYFDTL 246

Query: 831 RDWVRQTRLHSI 866
           ++    ++ +S+
Sbjct: 247 KEIGASSKSNSV 258

>gb|AAF68391.1|AF236375_1 hypersensitive-induced response protein [Zea mays]
          Length = 287

 Score =  283 bits (724), Expect = 3e-75
 Identities = 141/258 (54%), Positives = 186/258 (71%)
 Frame = +3

Query: 93  MSCCCCCVCPAQETVAIVENCGKFSHIAHPGFNCLLCCLGASVAGSLSLRVQQLDVKCET 272
           M   CCCV   Q TVAI E  GKF  +  PG +C+    G  VAG L+LR+QQLDV+CET
Sbjct: 1   MGNLCCCVQVDQSTVAIREQFGKFDSVLEPGCHCMPWFAGKRVAGQLTLRLQQLDVRCET 60

Query: 273 KTKDNVFVNLVVSVQYQVQREAVYDAYYRLTDSRQQISAYVFDEVRAAVPKMSLDDTYEL 452
           KTKDNVFVN+V S+QY+   +   DA+Y+L+++R QI AYVFD +RA+VPK+ LDD +E 
Sbjct: 61  KTKDNVFVNVVASIQYRALADKASDAFYKLSNTRSQIQAYVFDVIRASVPKLHLDDAFEQ 120

Query: 453 KDEIAKGIKDALAKSMSEYGYLIIHVLVNDIEPAHKVKEAMNEINAARRMRVAAAEKAEA 632
           KDEIA+ +++ L K+MS YG+ I+  L+ DIEP   VK AMNEINAA R+R AA EKAEA
Sbjct: 121 KDEIARAVEEELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRAAANEKAEA 180

Query: 633 EKVAVVKSAEAEAEAKFLQGQGIARQRQAIISGLRDSVSDFQNGVVDISSKEVLSLMLLT 812
           EK+  +K AE EAEAK+L G GIARQRQAI+ GLRDSV  F   V   ++K+V+ ++L+T
Sbjct: 181 EKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLIT 240

Query: 813 QYFDTLRDWVRQTRLHSI 866
           QYFDT+++    ++  S+
Sbjct: 241 QYFDTMKEIGASSKASSV 258

>ref|NP_201080.1| hypersensitive-induced response protein [Arabidopsis thaliana]
           gi|10177452|dbj|BAB10843.1| hypersensitive-induced
           response protein [Arabidopsis thaliana]
           gi|17065548|gb|AAL32928.1| hypersensitive-induced
           response protein [Arabidopsis thaliana]
           gi|21386975|gb|AAM47891.1| hypersensitive-induced
           response protein [Arabidopsis thaliana]
           gi|21554781|gb|AAM63689.1| hypersensitive-induced
           response protein [Arabidopsis thaliana]
          Length = 286

 Score =  283 bits (724), Expect = 3e-75
 Identities = 143/243 (58%), Positives = 182/243 (74%)
 Frame = +3

Query: 108 CCVCPAQETVAIVENCGKFSHIAHPGFNCLLCCLGASVAGSLSLRVQQLDVKCETKTKDN 287
           CCV   Q TVAI E  GKF  +  PG + L  CLG+ VAG LSLRVQQLDV+CETKTKDN
Sbjct: 6   CCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCETKTKDN 65

Query: 288 VFVNLVVSVQYQVQREAVYDAYYRLTDSRQQISAYVFDEVRAAVPKMSLDDTYELKDEIA 467
           VFVN+V S+QY+       DAYY+L+++R QI AYVFD +RA+VPK+ LDD +E K++IA
Sbjct: 66  VFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQKNDIA 125

Query: 468 KGIKDALAKSMSEYGYLIIHVLVNDIEPAHKVKEAMNEINAARRMRVAAAEKAEAEKVAV 647
           K +++ L K+MS YGY I+  L+ DIEP   VK AMNEINAA RMR+AA EKAEAEK+  
Sbjct: 126 KAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEAEKILQ 185

Query: 648 VKSAEAEAEAKFLQGQGIARQRQAIISGLRDSVSDFQNGVVDISSKEVLSLMLLTQYFDT 827
           +K AE EAE+K+L G GIARQRQAI+ GLRDSV  F   V   ++K+V+ ++L+TQYFDT
Sbjct: 186 IKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVTQYFDT 245

Query: 828 LRD 836
           +++
Sbjct: 246 MKE 248



EST assemble image


clone accession position
1 MX034a12_r BP087417 1 362
2 CM009a05_r AV397658 10 589
3 MX229b07_r BP090789 10 399
4 CM020h08_r AV397483 11 589
5 HCL074e07_r AV643705 12 547
6 LCL009a11_r AV626438 15 546
7 CM078d06_r AV391809 328 918




Chlamydomonas reinhardtii
Kazusa DNA Research Institute