KCC000988A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000988A_C01 KCC000988A_c01
caccaagcttttttggggcgaagaccggcgaccaaacttgagcgccagggtccccagtcg
cgagcacagcagctcagcaaTATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACA
CAGGAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCACATATG
TACATTGATTATAAAGGAGTGCCGCCTCACTAGTGGCTTCTCGTGGCGCACGAAGTGCGC
CCACGAGCTGCACGCCTACAACAAGTGCGAGTACAAGGAGTTCAAGCGCCGCGTTGCCAT
CGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCCGCATAAACAGCCCGGGGGGCTGG
CAGAAACGGCAGGGTCAACGGGAGCTGGGCGGAGCTGCAGGATCAGGATCGAGCAATTGC
AATTGCAATTGCGGACGAGCGGTGCCAGCGGTGCCAGCGGTGCCAGCGGTGCCAGCGGTG
CCAGCGGCTGCACTGGGATGGCGCTTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000988A_C01 KCC000988A_c01
         (508 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ73135.1| NADH:ubiquinone oxidoreductase B18-like subunit [...   105  1e-42
ref|XP_308300.1| ENSANGP00000010925 [Anopheles gambiae] gi|21292...    40  3e-07
ref|NP_572993.1| CG5548-PA [Drosophila melanogaster] gi|7293029|...    40  2e-06
ref|XP_327492.1| hypothetical protein [Neurospora crassa] gi|289...    37  1e-05
ref|NP_778753.1| cellulose 1,4-beta-cellobiosidase [Xylella fast...    48  8e-05

>gb|AAQ73135.1| NADH:ubiquinone oxidoreductase B18-like subunit [Chlamydomonas
           reinhardtii]
          Length = 86

 Score =  105 bits (263), Expect(2) = 1e-42
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +2

Query: 194 KECRLTSGFSWRTKCAHELHAYNKCEYKEFKRRVAIAIEEKRRRGLIAA 340
           KECRLTSGFSWRTKCAHELHAYNKCEYKEFKRRVAIAIEEKRRRGLIAA
Sbjct: 38  KECRLTSGFSWRTKCAHELHAYNKCEYKEFKRRVAIAIEEKRRRGLIAA 86

 Score = 89.0 bits (219), Expect(2) = 1e-42
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +1

Query: 82  MADRFPPPPMKATQEQMDAADVPYHYRDYCAHMYIDYK 195
           MADRFPPPPMKATQEQMDAADVPYHYRDYCAHMYIDYK
Sbjct: 1   MADRFPPPPMKATQEQMDAADVPYHYRDYCAHMYIDYK 38

>ref|XP_308300.1| ENSANGP00000010925 [Anopheles gambiae] gi|21292452|gb|EAA04597.1|
           ENSANGP00000010925 [Anopheles gambiae str. PEST]
          Length = 155

 Score = 39.7 bits (91), Expect(2) = 3e-07
 Identities = 17/36 (47%), Positives = 22/36 (60%)
 Frame = +1

Query: 109 MKATQEQMDAADVPYHYRDYCAHMYIDYKGVPPH*W 216
           M AT+E+M+AA +P   RDYCAH  I Y+      W
Sbjct: 69  MIATEEEMEAAKLPLEARDYCAHKLIQYRACRSDVW 104

 Score = 35.8 bits (81), Expect(2) = 3e-07
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 194 KECRLTSGFSWRTKCAHELHAYNKCEYKEFKRRVAIAIEEKR 319
           + CR +  + W  KCAHE H Y  CEY ++  R+     EKR
Sbjct: 97  RACR-SDVWPWAYKCAHEKHEYLNCEYDDYILRLKEYEREKR 137

>ref|NP_572993.1| CG5548-PA [Drosophila melanogaster] gi|7293029|gb|AAF48416.1|
           CG5548-PA [Drosophila melanogaster]
          Length = 117

 Score = 40.4 bits (93), Expect(2) = 2e-06
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +1

Query: 109 MKATQEQMDAADVPYHYRDYCAHMYIDYK 195
           M ATQE+M++A +P  +RDYCAH+ I Y+
Sbjct: 37  MIATQEEMESAKLPLEFRDYCAHLAIAYQ 65

 Score = 32.3 bits (72), Expect(2) = 2e-06
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 170 AHICTLIIKECRLTSGFSWRTKCAHELHAYNKCEYKEFKRRVAIAIEEKR 319
           AH+  +  + CR +  F +  KCAH+ H Y  CEY+++  R+     E+R
Sbjct: 58  AHLA-IAYQACR-SDTFPFVYKCAHQKHEYLTCEYEDYVLRMKEFERERR 105

>ref|XP_327492.1| hypothetical protein [Neurospora crassa] gi|28918522|gb|EAA28195.1|
           hypothetical protein [Neurospora crassa]
          Length = 776

 Score = 37.4 bits (85), Expect(2) = 1e-05
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 KCAHELHAYNKCEYKEFKRRVAIAIEEKRRRG 328
           KC  E H Y KC+Y EFK+RVA   E +  +G
Sbjct: 740 KCEDERHTYEKCQYVEFKKRVAKMDELRAAKG 771

 Score = 32.7 bits (73), Expect(2) = 1e-05
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 112 KATQEQMDAADVPYHYRDYCAHMYI 186
           KAT+E+M  A +P  YRD CAH+ I
Sbjct: 701 KATREEMRDAKLPLAYRDSCAHLLI 725

>ref|NP_778753.1| cellulose 1,4-beta-cellobiosidase [Xylella fastidiosa Temecula1]
           gi|28056523|gb|AAO28402.1| cellulose
           1,4-beta-cellobiosidase [Xylella fastidiosa Temecula1]
          Length = 643

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 30/100 (30%), Positives = 57/100 (57%)
 Frame = +3

Query: 198 SAASLVASRGARSAPTSCTPTTSASTRSSSAALPSPSRRSGAGASSPHKQPGGLAETAGS 377
           S++S  +S  + S+ +S + ++S+S+ SSS++  S S  SG+ +SS      G + ++GS
Sbjct: 454 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSSGSSSSSGSSSSSGS 513

Query: 378 TGAGRSCRIRIEQLQLQLRTSGASGASGASGASGASGCTG 497
           T +  S             +SG++ +SG++ +SG+S  TG
Sbjct: 514 TSSSGS-----------TSSSGSTSSSGSTSSSGSSSGTG 542



EST assemble image


clone accession position
1 CM008f04_r AV386759 1 508
2 CM091h09_r AV397527 133 477




Chlamydomonas reinhardtii
Kazusa DNA Research Institute