KCC000974A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000974A_C01 KCC000974A_c01
CAACAATGGACTTCAAGAGCATCAGCGGCGAGTATGACGTCTCCAAGAAGACGCTGAAGA
CCGCCTGCAAGCTGAAGGTGGCCGACAACATCTCCGTCAAGCTCAAGCTGGCCAACCCTG
GTGCCAAGCCAGGCATTGAGGTCGAGTACAAGGGCTTCGAGGCGACCTACGACGTGAAGA
GCAAGGACTTCAGCATCGAGAAGAAGTTCAAGCTGAGGGCTGGCGAGCTGAAGATCAAGC
AGAAGGTGCCCGGTCTGAGGACCGAGCTGCTGCCCTCGCCCGAGGTCCAGTGGAAGTCGC
ACATTGTCAAGGGCAGGAAGTTCTCGTGGGAGGTGGAGCCCAGCTACTGCTTCCAGGCCC
GCAAGGCCAAGCTGGACCAGGTGATTGAGCTCAACGGCGGCAAGGAGAAGCTCAAGCTGG
AGTTCGACAGCAAGCTGGGCGTGAAGGGCCTGGTGGGCACCCTGACGCACAAGGTAGGCC
AGTCCTGGGCCAAGCAGCTGAGCTGCCAAGTACAGACAGGCCTGCCGTGCCCCTCGCTCA
TCCACGAGGTGGAGCCCAGCAATGAAGTGTTGAGCCTGAAGAGCACCTGTGTGTGCATCA
AGGCTGCTGCGAACTGAAGATTTGTTGGACGAGGTCAAGCCCTGGCAATGTGTGCTGTGG
CCTCAAGCCCAAGATCACCCTGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000974A_C01 KCC000974A_c01
         (683 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG02503.1|AF295371_1 chlamyopsin 2 [Chlamydomonas reinhardtii]    353  1e-96
pir||S60158 chlamyopsin - Chlamydomonas reinhardtii gi|1122270|e...   353  1e-96
pir||T10808 volvoxopsin - Volvox carteri gi|1914803|emb|CAA72088...   249  3e-65
ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178...    49  5e-05
gb|AAQ82688.1| Epa4p [Candida glabrata]                                48  2e-04

>gb|AAG02503.1|AF295371_1 chlamyopsin 2 [Chlamydomonas reinhardtii]
          Length = 243

 Score =  353 bits (906), Expect = 1e-96
 Identities = 186/200 (93%), Positives = 188/200 (94%)
 Frame = +3

Query: 6   MDFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSK 185
           MDFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSK
Sbjct: 1   MDFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSK 60

Query: 186 DFSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARK 365
           DFSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARK
Sbjct: 61  DFSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARK 120

Query: 366 AKLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLSCQVQTGLPCPSLIH 545
           AKLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLS +       PSLIH
Sbjct: 121 AKLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLSAKYSQAAG-PSLIH 179

Query: 546 EVEPSNEVLSLKSTCVCIKA 605
           EVEPS +V SLKST V IKA
Sbjct: 180 EVEPSKKV-SLKST-VGIKA 197

>pir||S60158 chlamyopsin - Chlamydomonas reinhardtii gi|1122270|emb|CAA88832.1|
           chlamyopsin [Chlamydomonas reinhardtii]
           gi|4467383|emb|CAB37649.1| chlamyopsin [Chlamydomonas
           reinhardtii] gi|1586088|prf||2203264A chlamyrhodopsin
          Length = 235

 Score =  353 bits (906), Expect = 1e-96
 Identities = 186/200 (93%), Positives = 188/200 (94%)
 Frame = +3

Query: 6   MDFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSK 185
           MDFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSK
Sbjct: 1   MDFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSK 60

Query: 186 DFSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARK 365
           DFSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARK
Sbjct: 61  DFSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARK 120

Query: 366 AKLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLSCQVQTGLPCPSLIH 545
           AKLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLS +       PSLIH
Sbjct: 121 AKLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLSAKYSQAAG-PSLIH 179

Query: 546 EVEPSNEVLSLKSTCVCIKA 605
           EVEPS +V SLKST V IKA
Sbjct: 180 EVEPSKKV-SLKST-VGIKA 197

>pir||T10808 volvoxopsin - Volvox carteri gi|1914803|emb|CAA72088.1| volvoxopsin
           [Volvox carteri] gi|1914805|emb|CAA93259.1| volvoxopsin
           [Volvox carteri]
          Length = 244

 Score =  249 bits (636), Expect = 3e-65
 Identities = 128/199 (64%), Positives = 154/199 (77%)
 Frame = +3

Query: 9   DFKSISGEYDVSKKTLKTACKLKVADNISVKLKLANPGAKPGIEVEYKGFEATYDVKSKD 188
           D K++  EYDV+KKTLK++CK KVAD++ VKLKL +P     +EV+ K +  TYDV  KD
Sbjct: 3   DLKNLGAEYDVTKKTLKSSCKFKVADSVGVKLKLTSPANALNVEVDGKNWGITYDVVKKD 62

Query: 189 FSIEKKFKLRAGELKIKQKVPGLRTELLPSPEVQWKSHIVKGRKFSWEVEPSYCFQARKA 368
             ++ ++KL+ GE KIKQKVPGL+TELLPSPEVQWK H+VK +KF+WEVEPSYCFQAR A
Sbjct: 63  LELKGEWKLKGGEFKIKQKVPGLKTELLPSPEVQWKQHVVKNKKFAWEVEPSYCFQARLA 122

Query: 369 KLDQVIELNGGKEKLKLEFDSKLGVKGLVGTLTHKVGQSWAKQLSCQVQTGLPCPSLIHE 548
           KL+Q +E NGGK+KLKLE DSK GVK  VGTL+ KVG SWAKQLS +       PSL HE
Sbjct: 123 KLEQTVEFNGGKQKLKLETDSKAGVKATVGTLSAKVGNSWAKQLSVKYSKAAG-PSLTHE 181

Query: 549 VEPSNEVLSLKSTCVCIKA 605
           VEPSN+V SLKST V IKA
Sbjct: 182 VEPSNKV-SLKST-VGIKA 198

>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
           ENSANGP00000004749 [Anopheles gambiae str. PEST]
          Length = 633

 Score = 49.3 bits (116), Expect = 5e-05
 Identities = 43/131 (32%), Positives = 59/131 (44%), Gaps = 4/131 (3%)
 Frame = -3

Query: 537 ARGTAGLSVLGSSAAWPRTGLPCASGCPPGPS--RPACC--RTPA*ASPCRR*AQSPGPA 370
           A   A  + +    A P T  PCA+ CP  PS  RP+ C  R+P  A P  R A  P   
Sbjct: 503 AAAAAAPAAVAVRPASPCTPSPCAAACPTSPSAARPSGCPGRSPPSAPPAARPAGPPAAC 562

Query: 369 WPCGPGSSSWAPPPTRTSCP*QCATSTGPRARAAARSSDRAPSA*SSARQPSA*TSSRC* 190
               P   S + PP+R        +S GP A A+   S    SA  +AR P++  + R  
Sbjct: 563 TARAPPGRSRSAPPSR--------SSAGP-AVASGCGSPPDCSASCAARPPASPAAPRSS 613

Query: 189 SPCSSRRRSPR 157
           +P  + R +PR
Sbjct: 614 APPGASRPAPR 624

>gb|AAQ82688.1| Epa4p [Candida glabrata]
          Length = 1416

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 45/150 (30%), Positives = 76/150 (50%)
 Frame = +1

Query: 112 PTLVPSQALRSSTRASRRPTT*RARTSASRRSSS*GLAS*RSSRRCPV*GPSCCPRPRSS 291
           P   PSQ + SS+ +S  P++  + +S+S  SSS   +S  SS        S  P P SS
Sbjct: 321 PLPTPSQDINSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSS 380

Query: 292 GSRTLSRAGSSRGRWSPATASRPARPSWTR*LSSTAARRSSSWSSTASWA*RAWWAP*RT 471
            S + S + SS    SP+ +S  +  S +   SS+++  SSS SS++S +  +  +P  +
Sbjct: 381 SSSSSSSSSSS----SPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSS 436

Query: 472 R*ASPGPSS*AAKYRQACRAPRSSTRWSPA 561
             +S   SS ++    +  +  SS+  SP+
Sbjct: 437 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 466

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 42/139 (30%), Positives = 69/139 (49%)
 Frame = +1

Query: 10  TSRASAASMTSPRRR*RPPAS*RWPTTSPSSSSWPTLVPSQALRSSTRASRRPTT*RART 189
           +S +S++S +S        +S    ++S SSS  P+   S +  SS+ +S  P++  + +
Sbjct: 343 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPSSSSSSS 402

Query: 190 SASRRSSS*GLAS*RSSRRCPV*GPSCCPRPRSSGSRTLSRAGSSRGRWSPATASRPARP 369
           S+S  SSS   +S  SS        S  P P SS S + S + SS    S +++S  +  
Sbjct: 403 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 462

Query: 370 SWTR*LSSTAARRSSSWSS 426
           S     SS+++  SSS SS
Sbjct: 463 SSPSPSSSSSSSSSSSSSS 481

 Score = 40.8 bits (94), Expect = 0.019
 Identities = 41/139 (29%), Positives = 68/139 (48%)
 Frame = +1

Query: 82  PTTSPSSSSWPTLVPSQALRSSTRASRRPTT*RARTSASRRSSS*GLAS*RSSRRCPV*G 261
           P++S SSSS  +   S +  SS+ +S   ++  + + +   SSS   +S  SS   P   
Sbjct: 339 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPSSS 398

Query: 262 PSCCPRPRSSGSRTLSRAGSSRGRWSPATASRPARPSWTR*LSSTAARRSSSWSSTASWA 441
            S      SS S + S + SS    S +++S P+  S +   SS+++  SSS SS++S +
Sbjct: 399 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSS 458

Query: 442 *RAWWAP*RTR*ASPGPSS 498
                    +  +SP PSS
Sbjct: 459 --------SSSSSSPSPSS 469

 Score = 38.1 bits (87), Expect = 0.12
 Identities = 35/116 (30%), Positives = 57/116 (48%)
 Frame = +1

Query: 88  TSPSSSSWPTLVPSQALRSSTRASRRPTT*RARTSASRRSSS*GLAS*RSSRRCPV*GPS 267
           +S SSS  P+   S +  SS+ +S   ++  + +S+S  SSS   +   SS        S
Sbjct: 331 SSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSS 390

Query: 268 CCPRPRSSGSRTLSRAGSSRGRWSPATASRPARPSWTR*LSSTAARRSSSWSSTAS 435
             P P SS S + S + SS    S +++S  +  S +    S ++  SSS SS++S
Sbjct: 391 SSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSS 446

 Score = 38.1 bits (87), Expect = 0.12
 Identities = 37/118 (31%), Positives = 60/118 (50%)
 Frame = +1

Query: 82  PTTSPSSSSWPTLVPSQALRSSTRASRRPTT*RARTSASRRSSS*GLAS*RSSRRCPV*G 261
           P+ S SSSS  +   S +  SS+ +S   ++  + +S+   SSS   +S  SS   P   
Sbjct: 337 PSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPS 396

Query: 262 PSCCPRPRSSGSRTLSRAGSSRGRWSPATASRPARPSWTR*LSSTAARRSSSWSSTAS 435
            S      SS S + S + SS    S +++S  + PS +   SS+++  SSS SS++S
Sbjct: 397 SSSSSSSSSSSSSSSSSSSSSSSS-SSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSS 453

 Score = 35.0 bits (79), Expect = 1.1
 Identities = 38/121 (31%), Positives = 59/121 (48%)
 Frame = +1

Query: 10  TSRASAASMTSPRRR*RPPAS*RWPTTSPSSSSWPTLVPSQALRSSTRASRRPTT*RART 189
           +S +S++S +SP       +S    ++S SSSS  +   S +  SS+ +S  P+   + +
Sbjct: 382 SSSSSSSSSSSPSPSSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSS 438

Query: 190 SASRRSSS*GLAS*RSSRRCPV*GPSCCPRPRSSGSRTLSRAGSSRGRWSPATASRPARP 369
           S+S  SSS   +S  SS        S  P P SS S + S + SS    S   +S+P  P
Sbjct: 439 SSSSSSSSSSSSSSSSSSSSS--SSSSSPSPSSSSSSSSSSSSSSP---SIQPSSKPVDP 493

Query: 370 S 372
           S
Sbjct: 494 S 494

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 40/139 (28%), Positives = 67/139 (47%)
 Frame = +1

Query: 10  TSRASAASMTSPRRR*RPPAS*RWPTTSPSSSSWPTLVPSQALRSSTRASRRPTT*RART 189
           +S +S++S +S        +S    ++S SSSS P+   S +  SS+ +S  P+   + +
Sbjct: 341 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSPSPSSSSS 400

Query: 190 SASRRSSS*GLAS*RSSRRCPV*GPSCCPRPRSSGSRTLSRAGSSRGRWSPATASRPARP 369
           S+S  SSS   +S  SS               SS S + S + SS    S +++S  +  
Sbjct: 401 SSSSSSSSSSSSSSSSS---------------SSSSSSSSSSSSSPSPSSSSSSSSSSSS 445

Query: 370 SWTR*LSSTAARRSSSWSS 426
           S +   SS+++  SSS SS
Sbjct: 446 SSSSSSSSSSSSSSSSSSS 464



EST assemble image


clone accession position
1 HC060a05_r AV636475 1 578
2 HC047d10_r AV635524 68 500
3 CM069a04_r AV391228 70 430
4 HC021f10_r AV633514 70 447
5 LCL035h02_r AV628042 70 469
6 HCL063e07_r AV643088 72 554
7 HC040b11_r AV634965 72 481
8 HC046f05_r AV635463 74 471
9 CM007g08_r AV386839 75 293
10 HC069b12_r AV637134 79 288
11 HC054d08_r AV636041 82 468
12 MX202f12_r BP089200 103 483
13 LCL057e01_r AV629366 134 616
14 LCL033g09_r AV627914 258 574
15 CM022e06_r AV387825 427 868
16 MX053g08_r BP088195 509 789




Chlamydomonas reinhardtii
Kazusa DNA Research Institute