KCC000971A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000971A_C01 KCC000971A_c01
GCGTAGCGACCTCTCATTATTCCTTTGCACAGGACCCTAGCAACCTAGGCTACCTAGCGG
AGGACAAAATGCCGCAGAACGAGCATATTGAGCTGCACCAGAAGCGCTATGGAAAGCGTC
TTGACTATGACGAGCGCAAGCGCAAGAAGCAGGCCCGTGAGGTCCACAAGCGGTCTGCCT
ACGCGCAGAAGGCGCTGGGTCTCAAGGGCAAGATGTTTGCCAAGAAGCGGCACCAGGAGA
AGGCTACGATGAAGAAGACGATTGCGATGCACGAGGAGCGGGACAACAAGCACAAGGCGC
AGGACGGCGCGCCGCAGAATGCTGTGCCGGCCTACCTGCTGGAGCGTGAGCAGGTGGACC
GCGCCAAGGTCCTGAGCAACACCATCAAGCAGAAGCGGAAGGAGAAGGCGGGCAAGTGGG
AGGTGCCTCTGCCGCAGGTGCGGCCCATCGCCGAGGACGAGATGTTCAAGGTGATGAAGA
GCGGCAAGCGCATGAAGAAGAGCTGGAAGCGCATGATCACAAAGGTGACCTTCGTGGGCC
AGGGCTTCACGCGCAAGCCGCCGAAGTACGAGCGCTTCATCCGGCCCACCGGTCTGCGCA
TGACCAAGGCGCACGTGACTCATCCCGAGCTCAAGGCAACCTTCTGCCTGGACATCATTG
GCGTGAAGAAGAACCCCAACGGGCAAATGTACTCGCAGCTGGGCGTGGTGACAAAGGGCA
CGATCCTGGAGGTGAACGTCAGCGAGCTGGGACTGGTGACGCCCGGCGGCAAGGTGGTGT
GGGGCAAGTACGCGCAGGTGACCAACAACCCCGAGAACGACGGCTGCATCAACGCCGTGC
TGCTGGTGTAATGAAGCACTGGTGGCGTGGGAGCGAGCGTGTGGGCGCTGGCTGCTGCTG
CTCAGGAGGAGGAGGAGGAGCTAGGACCAGCCTTCAGCAGCCTTCAGCAGCCATGTGGTG
TGGAGCCGATGGGAGCCGGAAGCAGCGGCTGGCTGGAGGTGTGGCGCGGCTGGCTGGGCC
TGGCGGTGGAGGAGCAGCGCAGCAGCGGCTGGAGCATGAGAGGGCGCGTTGATGTGGGGT
GGCGCACATGGGGCGGCCTGGCGTGAGCGGGGCCTGAGTGAGGGTAATAGGCATGGGTGT
AGGTTGGGTAGATGTTGGGAATAGGCACGGGAAGGGGAGTGCGGTTATGCAGCTGCAAGC
TGCGCAGCCTGTTTGGTTGTTGGTACGTGGGCACAAGGCGATAGGTATGGGTAGTGTGTG
TTTGACACAGAGCATGTTTTTACTAGCATAGGACTGCCGCTCCCATGTTGCACGTTGTTG
GAAGGGCGGTCGGGGCCTGAGCGTGTTGTCAGCTGACGAACACTCGAGAGAGGGCGTGTA
CATATATTGTGTGTCACCCGCTTTGGCGTCGCTGCGAATGGGAACGCTGCAGCAGTCTGC
TTTCCGAAGACATGTCGGTTCAAACAGGCGGCTATGCGTGGGCGCATTTGTTAGGGACGC
ACAAGGACGCGCTATGCGCGCGCGTGTGTGCAGGTGACAACTGACGGAAGTCCTTTTACA
ACTGACCAAATGACTTGACATGGCTTGTACGGCGTTGAACACATGACAATGACGCAGAAT
GATTCCGGGTGCCTCTTGAGCACCTGCACCGCATGTTCCGCAAAGTATTCATTGGGTGGC
CGTAAGGCCGCAAGCAATGGGATTAGCCTGTGGCCTTGGGGGAGTGAGACTTTCCTATGG
TCGATGGTGCCAGGCGTTGGTTGGTGGGGGCCGTCCGCTCCTTGATGGTGTAATCGCAAT
CGTCTTc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000971A_C01 KCC000971A_c01
         (1807 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_196254.1| expressed protein [Arabidopsis thaliana] gi|975...   417  e-115
dbj|BAC79847.1| putative TGF(transfoming growth factor) beta ind...   414  e-114
gb|AAM62680.1| unknown [Arabidopsis thaliana]                         410  e-113
ref|NP_055701.1| TGF beta-inducible nuclear protein 1; hairy cel...   400  e-110
ref|XP_231263.2| CDK105 protein [Rattus norvegicus] gi|34925411|...   400  e-110

>ref|NP_196254.1| expressed protein [Arabidopsis thaliana] gi|9758416|dbj|BAB08958.1|
           gene_id:MHF15.12~ref|NP_055701.1~similar to unknown
           protein [Arabidopsis thaliana]
           gi|16604561|gb|AAL24082.1| unknown protein [Arabidopsis
           thaliana] gi|21280889|gb|AAM45100.1| unknown protein
           [Arabidopsis thaliana]
          Length = 260

 Score =  417 bits (1071), Expect = e-115
 Identities = 198/260 (76%), Positives = 226/260 (86%)
 Frame = +3

Query: 69  MPQNEHIELHQKRYGKRLDYDERKRKKQAREVHKRSAYAQKALGLKGKMFAKKRHQEKAT 248
           MPQ ++I+LH+KR G RLD+ ERKRKK+AREVHK S  AQK+LG+KGKM AKK + EKA 
Sbjct: 1   MPQGDYIDLHRKRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKAL 60

Query: 249 MKKTIAMHEERDNKHKAQDGAPQNAVPAYLLEREQVDRAKVLSNTIKQKRKEKAGKWEVP 428
           MKKT+ MHEE  ++ KA +   + AVPAYLL+RE   RAKVLSNTIKQKRKEKAGKWEVP
Sbjct: 61  MKKTLKMHEESSSRRKADENVQEGAVPAYLLDREDTTRAKVLSNTIKQKRKEKAGKWEVP 120

Query: 429 LPQVRPIAEDEMFKVMKSGKRMKKSWKRMITKVTFVGQGFTRKPPKYERFIRPTGLRMTK 608
           LP+VRP+AEDEMF+V++SGKR  K WKRM+TK TFVG  FTRKPPKYERFIRP+GLR TK
Sbjct: 121 LPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 180

Query: 609 AHVTHPELKATFCLDIIGVKKNPNGQMYSQLGVVTKGTILEVNVSELGLVTPGGKVVWGK 788
           AHVTHPELK TFCL+IIG+KKNPNG MY+ LGV+T+GTI+EVNVSELGLVTP GKVVWGK
Sbjct: 181 AHVTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 789 YAQVTNNPENDGCINAVLLV 848
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

>dbj|BAC79847.1| putative TGF(transfoming growth factor) beta inducible nuclear
           protein TINP1 [Oryza sativa (japonica cultivar-group)]
          Length = 259

 Score =  414 bits (1065), Expect = e-114
 Identities = 200/260 (76%), Positives = 226/260 (86%)
 Frame = +3

Query: 69  MPQNEHIELHQKRYGKRLDYDERKRKKQAREVHKRSAYAQKALGLKGKMFAKKRHQEKAT 248
           MPQ +HIELHQKR+G+RLDY+ERKRK+ AREVHKRS  A++ LG KGK FAKKR+ EKA 
Sbjct: 1   MPQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQ 60

Query: 249 MKKTIAMHEERDNKHKAQDGAPQNAVPAYLLEREQVDRAKVLSNTIKQKRKEKAGKWEVP 428
           MKKT+ MH+E  ++ K  D   + A+P YLL+R+Q  RAKVLSNTIKQKR EKAGKWEVP
Sbjct: 61  MKKTLKMHDESTSRQKVDD-VQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVP 119

Query: 429 LPQVRPIAEDEMFKVMKSGKRMKKSWKRMITKVTFVGQGFTRKPPKYERFIRPTGLRMTK 608
           LP+VRP+AE+EMFKV+++GKR  K WKRM+TK TFVG GFTRKPPKYERFIRPTGLR TK
Sbjct: 120 LPKVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 179

Query: 609 AHVTHPELKATFCLDIIGVKKNPNGQMYSQLGVVTKGTILEVNVSELGLVTPGGKVVWGK 788
           AHVTHPELK TF LDII VKKNPNGQMYS LGV+T+GTI+EVNVSELGLVTP GKVVWGK
Sbjct: 180 AHVTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRGTIIEVNVSELGLVTPAGKVVWGK 239

Query: 789 YAQVTNNPENDGCINAVLLV 848
           YAQVTNNPENDGCINAVLLV
Sbjct: 240 YAQVTNNPENDGCINAVLLV 259

>gb|AAM62680.1| unknown [Arabidopsis thaliana]
          Length = 259

 Score =  410 bits (1054), Expect = e-113
 Identities = 197/260 (75%), Positives = 225/260 (85%)
 Frame = +3

Query: 69  MPQNEHIELHQKRYGKRLDYDERKRKKQAREVHKRSAYAQKALGLKGKMFAKKRHQEKAT 248
           MPQ ++I+LH+KR G RLD+ ERKRKK+AREVHK S  AQK+LG+KGKM AKK + EKA 
Sbjct: 1   MPQGDYIDLHRKRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKAL 60

Query: 249 MKKTIAMHEERDNKHKAQDGAPQNAVPAYLLEREQVDRAKVLSNTIKQKRKEKAGKWEVP 428
           MKKT+ MHEE  ++ KA +   + AVPAYLL+RE   RAKVLSNTIKQKRKE AGKWEVP
Sbjct: 61  MKKTLKMHEESSSRRKADENVQEGAVPAYLLDREDTTRAKVLSNTIKQKRKE-AGKWEVP 119

Query: 429 LPQVRPIAEDEMFKVMKSGKRMKKSWKRMITKVTFVGQGFTRKPPKYERFIRPTGLRMTK 608
           LP+VRP+AEDEMF+V++SGKR  K WKRM+TK TFVG  FTRKPPKYERFIRP+GLR TK
Sbjct: 120 LPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 179

Query: 609 AHVTHPELKATFCLDIIGVKKNPNGQMYSQLGVVTKGTILEVNVSELGLVTPGGKVVWGK 788
           AHVTHPELK TFCL+IIG+KKNPNG MY+ LGV+T+GTI+EVNVSELGLVTP GKVVWGK
Sbjct: 180 AHVTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGK 239

Query: 789 YAQVTNNPENDGCINAVLLV 848
           YAQVTNNPENDGCINAVLLV
Sbjct: 240 YAQVTNNPENDGCINAVLLV 259

>ref|NP_055701.1| TGF beta-inducible nuclear protein 1; hairy cell leukemia protein 1
           [Homo sapiens] gi|34925050|sp|O95478|TIP1_HUMAN TGF
           beta-inducible nuclear protein 1 (Hairy cell leukemia
           protein 1) (HUSSY-29) gi|3881976|emb|CAA10008.1|
           hypothetical protein [Homo sapiens]
           gi|11999092|gb|AAG43048.1|AF077615_1 TGF beta inducible
           nuclear protein TINP1 [Homo sapiens]
           gi|13528996|gb|AAH05288.1| TGF beta-inducible nuclear
           protein 1 [Homo sapiens]
           gi|14091475|gb|AAK53761.1|AF372458_1 hairy cell leukemia
           protein 1 [Homo sapiens]
          Length = 260

 Score =  400 bits (1028), Expect = e-110
 Identities = 191/260 (73%), Positives = 221/260 (84%)
 Frame = +3

Query: 69  MPQNEHIELHQKRYGKRLDYDERKRKKQAREVHKRSAYAQKALGLKGKMFAKKRHQEKAT 248
           MPQNE+IELH+KRYG RLDY E+KRKK++RE H+RS  A+K +GLK K++ K+RH EK  
Sbjct: 1   MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query: 249 MKKTIAMHEERDNKHKAQDGAPQNAVPAYLLEREQVDRAKVLSNTIKQKRKEKAGKWEVP 428
           MKKTI MHE+R+ K K  +  PQ AVPAYLL+RE   RAKVLSN IKQKRKEKAGKWEVP
Sbjct: 61  MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query: 429 LPQVRPIAEDEMFKVMKSGKRMKKSWKRMITKVTFVGQGFTRKPPKYERFIRPTGLRMTK 608
           LP+VR   E E+ KV+++GKR KK+WKRM+TKV FVG GFTRKPPKYERFIRP GLR  K
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query: 609 AHVTHPELKATFCLDIIGVKKNPNGQMYSQLGVVTKGTILEVNVSELGLVTPGGKVVWGK 788
           AHVTHPELKATFCL I+GVKKNP+  +Y+ LGV+TKGT++EVNVSELGLVT GGKV+WGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query: 789 YAQVTNNPENDGCINAVLLV 848
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260

>ref|XP_231263.2| CDK105 protein [Rattus norvegicus] gi|34925411|sp|Q9CR47|TIP1_MOUSE
           TGF beta-inducible nuclear protein 1 (L-name related
           LNR42) gi|12849836|dbj|BAB28500.1| unnamed protein
           product [Mus musculus] gi|12852013|dbj|BAB29237.1|
           unnamed protein product [Mus musculus]
           gi|26347269|dbj|BAC37283.1| unnamed protein product [Mus
           musculus]
          Length = 260

 Score =  400 bits (1027), Expect = e-110
 Identities = 191/260 (73%), Positives = 220/260 (84%)
 Frame = +3

Query: 69  MPQNEHIELHQKRYGKRLDYDERKRKKQAREVHKRSAYAQKALGLKGKMFAKKRHQEKAT 248
           MPQNE+IELH+KRYG RLDY E+KRKK+ RE H+RS  A+K +GLK K++ K+RH EK  
Sbjct: 1   MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 60

Query: 249 MKKTIAMHEERDNKHKAQDGAPQNAVPAYLLEREQVDRAKVLSNTIKQKRKEKAGKWEVP 428
           MKKTI MHE+R+ K K  +  PQ AVPAYLL+RE   RAKVLSN IKQKRKEKAGKWEVP
Sbjct: 61  MKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 120

Query: 429 LPQVRPIAEDEMFKVMKSGKRMKKSWKRMITKVTFVGQGFTRKPPKYERFIRPTGLRMTK 608
           LP+VR   E E+ KV+++GKR KK+WKRM+TKV FVG GFTRKPPKYERFIRP GLR  K
Sbjct: 121 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 180

Query: 609 AHVTHPELKATFCLDIIGVKKNPNGQMYSQLGVVTKGTILEVNVSELGLVTPGGKVVWGK 788
           AHVTHPELKATFCL I+GVKKNP+  +Y+ LGV+TKGT++EVNVSELGLVT GGKV+WGK
Sbjct: 181 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 240

Query: 789 YAQVTNNPENDGCINAVLLV 848
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260



EST assemble image


clone accession position
1 HCL072h01_r AV643618 1 576
2 CM016d09_r AV387449 89 409
3 LCL081f02_r AV630615 90 392
4 CM040a07_r AV389162 90 634
5 CM018d09_r AV387263 90 622
6 LCL008d07_r AV626397 91 612
7 CM030a06_r AV397363 93 643
8 HC041e08_r AV635073 94 610
9 LC076a10_r AV624317 97 669
10 CM027d03_r AV387629 98 687
11 MX230d03_r BP090871 99 389
12 CM019h01_r AV387303 102 638
13 HC091d08_r AV638832 102 480
14 LCL027b11_r AV627466 118 452
15 HCL074e05_r AV643704 531 996
16 HC050e03_r AV635755 633 1020
17 HC081d08_r AV638063 697 1114
18 CM007f07_r AV386833 749 1037
19 HC074d07_r AV637541 812 1258
20 CM030b08_r AV397411 1068 1471
21 MXL030a11_r BP094808 1103 1526
22 MXL002b01_r BP093008 1249 1598
23 MXL066c08_r BP096878 1249 1711
24 LC004a11_r AV619120 1393 1935
25 LC055e07_r AV622849 1416 1946




Chlamydomonas reinhardtii
Kazusa DNA Research Institute