>KCC000970A_C01 KCC000970A_c01
gTCATATGAGCCGACAGGTGTCGCTAGGAATGGGGCGCAGGCCCCCCTACAACATTTCGA
GTGTTGGGAGCCATCTTCGGCCGTTTTGGACCACCGACCGATCTATATAGCATGGACTAG
TGGAATGGGCTCGAAAGCTAGTCGCCAGGCGATACGCCGCGCACTGGAGCTGCTGTGGGC
CCTCAAAGCAACGATTCTCCTAGTATACCTGAGCATCAGCCCACAAGTTACAACATTCAG
TTTAGCCATGGGTCGGGATGAGCAGAAGCAGTACTTGCACTGCTACACGTGCGGTAACAA
GGTGCTCTCGTACAGCTTCATCCGCGTCTGGAACCACCGTTTCGCACTACCTCAGCGCCA
CCATGGAGCCCAGCAACCCAGTGCTTCCCATTACTCCCCAGCCGCCGCCGGCGAAGGTTG
GCTTGCGCATTCGTTTCGAGTGCGCCCAGCACAACAGCACTGTGCAAGCAGAGCTACAGC
AGGGCTATGAGGAGGAGCAGGCGCGGAACCAGTATCGGGGCCACTATGCAGCACACTTCT
TGTCGCGGGCTTGGTGAACACCAGCATCGCGGCTGGCGCAGCGGCACAGCCGCGTGTACA
TGGCACGGAGTTACAGCTGCATCAGCAGGCGCCGGGGTCAAGAAGCGCTGTAGTGCCTGT
GGCTGCTGCTGCAGCCGCTGCTCCACAGCAGCATGTGCTGCGGCGCCAGGGGTTCCGCAG
GAATGCTTCCAGCGTCAGCGGTATCGACCTTGACACTTTCGACCCGCCACCA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000970A_C01 KCC000970A_c01
         (772 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD40904.1| OSJNBa0036B21.22 [Oryza sativa (japonica cultiva...    44  0.003
ref|XP_309339.1| ENSANGP00000015623 [Anopheles gambiae] gi|21292...    39  0.070
gb|AAG34156.1|AF312878_1 methyl-accepting chemotaxis protein Mcp...    39  0.12
ref|NP_386258.1| PROBABLE METHYL ACCEPTING CHEMOTAXIS TRANSMEMBR...    39  0.12
emb|CAD92391.1| Hypothetical protein F32A7.5c [Caenorhabditis el...    38  0.20

>emb|CAD40904.1| OSJNBa0036B21.22 [Oryza sativa (japonica cultivar-group)]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 36/103 (34%), Positives = 51/103 (48%), Gaps = 4/103 (3%)
 Frame = +3

Query: 216 SAHKLQHSV*PWVGMSRSSTCTATRAVTRC-SRTASSASGTTVSHYLSATMEPSNPVLPI 392
           SAHK QHS       S++++ T  RA+  C SRT  S +        +AT   +  +LP 
Sbjct: 162 SAHKAQHSTRRH--HSQTTSPTTQRAMPSCASRTQPSTTAA------AATPAQAPALLPP 213

Query: 393 TPQPPPAKVGLRIRFECA---QHNSTVQAELQQGYEEEQARNQ 512
            P+PPP +        CA   Q  +T+Q    +G EEEQ RN+
Sbjct: 214 APRPPPPR--------CAALHQPTTTIQTHRSRGEEEEQERNK 248

>ref|XP_309339.1| ENSANGP00000015623 [Anopheles gambiae] gi|21292908|gb|EAA05053.1|
           ENSANGP00000015623 [Anopheles gambiae str. PEST]
          Length = 265

 Score = 39.3 bits (90), Expect = 0.070
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -2

Query: 717 RNPWRRSTCCCGAAAAAAATGTTALLDPGAC*CSC 613
           R+PWRR+ CCCG AA+   T  +A   P A  CSC
Sbjct: 12  RSPWRRTICCCGWAASRRKTCASA-SPPSASCCSC 45

>gb|AAG34156.1|AF312878_1 methyl-accepting chemotaxis protein McpW [Sinorhizobium meliloti]
          Length = 689

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 34/97 (35%), Positives = 42/97 (43%)
 Frame = -2

Query: 675 AAAAATGTTALLDPGAC*CSCNSVPCTRGCAAAPAAMLVFTKPATRSVLHSGPDTGSAPA 496
           A   A  T A+  PG    +  S P  R   A  AA +   KPA          + + PA
Sbjct: 603 ARETAIRTAAIQPPGRAGSATASAPA-RAATATAAAPVSLRKPAAAQ-------SSTRPA 654

Query: 495 PPHSPAVALLAQCCCAGRTRNECASQPSPAAAGE*WE 385
           P  SPA AL+ +   AG   N   S PS  A+GE WE
Sbjct: 655 P--SPAKALMGKL--AGAFGNRPGSTPSVTASGENWE 687

>ref|NP_386258.1| PROBABLE METHYL ACCEPTING CHEMOTAXIS TRANSMEMBRANE PROTEIN
           [Sinorhizobium meliloti] gi|15075174|emb|CAC46731.1|
           PROBABLE METHYL ACCEPTING CHEMOTAXIS TRANSMEMBRANE
           PROTEIN [Sinorhizobium meliloti]
          Length = 689

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 34/97 (35%), Positives = 42/97 (43%)
 Frame = -2

Query: 675 AAAAATGTTALLDPGAC*CSCNSVPCTRGCAAAPAAMLVFTKPATRSVLHSGPDTGSAPA 496
           A   A  T A+  PG    +  S P  R   A  AA +   KPA          + + PA
Sbjct: 603 ARETAIRTAAIQPPGRAGSATASAPA-RAATATAAAPVSLRKPAAAQ-------SSTRPA 654

Query: 495 PPHSPAVALLAQCCCAGRTRNECASQPSPAAAGE*WE 385
           P  SPA AL+ +   AG   N   S PS  A+GE WE
Sbjct: 655 P--SPAKALMGKL--AGAFGNRPGSTPSVTASGENWE 687

>emb|CAD92391.1| Hypothetical protein F32A7.5c [Caenorhabditis elegans]
          Length = 877

 Score = 37.7 bits (86), Expect = 0.20
 Identities = 30/102 (29%), Positives = 46/102 (44%), Gaps = 9/102 (8%)
 Frame = -2

Query: 681 AAAAAAATGTTALLDPGAC*CSCNSVPCTRGCAAAPAAMLVFTKPATRSVLHSGPDTGSA 502
           AA+A  A  + A   P     + N+ P  R    + A +L  T PA+++   +     SA
Sbjct: 262 AASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVLTKTAPASKAPTRAPVPARSA 321

Query: 501 PAPPH-SPA--------VALLAQCCCAGRTRNECASQPSPAA 403
           PAPP  +PA           +AQ    G+ +    S+P+PAA
Sbjct: 322 PAPPRGAPAKPAANTAKAEPIAQKKTVGKVQGTAPSKPAPAA 363

EST assemble image

clone accession position 1 LCL091b08_r AV631268 1 281 2 LC026f11_r AV620777 2 548 3 CM007e09_r AV386838 27 493 4 HC072b07_r AV637360 245 687 5 LC026d11_r AV620757 256 772

---