Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000967A_C01 KCC000967A_c01
(649 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_288846.1| hypothetical protein XP_288846 [Mus musculus] 37 0.19
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 36 0.56
dbj|BAA20782.2| KIAA0324 protein [Homo sapiens] 36 0.56
pir||T02345 hypothetical protein KIAA0324 - human (fragment) gi|... 36 0.56
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 36 0.56
>ref|XP_288846.1| hypothetical protein XP_288846 [Mus musculus]
Length = 414
Score = 37.4 bits (85), Expect = 0.19
Identities = 39/123 (31%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
Frame = -2
Query: 357 KPTGKNQTTTVAEWHEPPPLTWPTLR----EGNVTNRAHA-RQEPQTVLTELALNRSVRH 193
+PT + TT A E PPL PTLR G T RAH R Q T+ A + H
Sbjct: 198 EPTLRGSTTQRAHHSEGPPLREPTLRGPTLRGPTTQRAHTQRAHTQRAHTQRAHTQRAHH 257
Query: 192 -------RTTFRCSGTKVSVARR----RSQAQCAPYPT*P----PPQPLPALKGPTTQPR 58
T R + +R R+ Q A + P PP P L+GPT +
Sbjct: 258 SEGPPLREPTLRGPTLRGPTTQRAHTQRAHTQRAHHSEGPHLEGPPLRGPTLRGPTLREP 317
Query: 57 TPR 49
T R
Sbjct: 318 TLR 320
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 35.8 bits (81), Expect = 0.56
Identities = 31/131 (23%), Positives = 53/131 (39%)
Frame = -2
Query: 426 SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
S SP ++ + +R T PT + ++ + P W R + H R
Sbjct: 1822 SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 1875
Query: 246 QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
+T L +RS + R S ++ SV RRRS+++ +P P + +
Sbjct: 1876 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 1935
Query: 66 QPRTPRTNNRT 34
+ RTP T R+
Sbjct: 1936 RSRTPTTRRRS 1946
>dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]
Length = 1783
Score = 35.8 bits (81), Expect = 0.56
Identities = 31/131 (23%), Positives = 53/131 (39%)
Frame = -2
Query: 426 SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
S SP ++ + +R T PT + ++ + P W R + H R
Sbjct: 853 SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 906
Query: 246 QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
+T L +RS + R S ++ SV RRRS+++ +P P + +
Sbjct: 907 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 966
Query: 66 QPRTPRTNNRT 34
+ RTP T R+
Sbjct: 967 RSRTPTTRRRS 977
>pir||T02345 hypothetical protein KIAA0324 - human (fragment)
gi|2996650|gb|AAC08453.1| KIAA0324 [Homo sapiens]
Length = 1791
Score = 35.8 bits (81), Expect = 0.56
Identities = 31/131 (23%), Positives = 53/131 (39%)
Frame = -2
Query: 426 SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
S SP ++ + +R T PT + ++ + P W R + H R
Sbjct: 854 SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 907
Query: 246 QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
+T L +RS + R S ++ SV RRRS+++ +P P + +
Sbjct: 908 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 967
Query: 66 QPRTPRTNNRT 34
+ RTP T R+
Sbjct: 968 RSRTPTTRRRS 978
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 35.8 bits (81), Expect = 0.56
Identities = 31/131 (23%), Positives = 53/131 (39%)
Frame = -2
Query: 426 SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
S SP ++ + +R T PT + ++ + P W R + H R
Sbjct: 345 SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 398
Query: 246 QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
+T L +RS + R S ++ SV RRRS+++ +P P + +
Sbjct: 399 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 458
Query: 66 QPRTPRTNNRT 34
+ RTP T R+
Sbjct: 459 RSRTPTTRRRS 469
