>KCC000967A_C01 KCC000967A_c01
ccaggccgtttgcagccgccgcacgtaccgtatggtcctgttattggttctgggtgtgcg
cggttgtgtagtcggcccctTGAGTGCGGGCAAAGGTTGTGGCGGCGGTCAAGTCGGGTA
CGGTGCACATTGCGCTTGACTGCGGCGGCGTGCCACCGATACTTTTGTGCCCGAGCACCT
AAAGGTGGTGCGATGACGGACAGACCGATTCAGCGCCAGCTCTGTGAGTACGGTCTGCGG
CTCTTGCCTTGCGTGTGCGCGGTTTGTGACATTGCCCTCTCGCAACGTGGGCCACGTCAG
TGGCGGTGGCTCATGCCATTCCGCAACAGTAGTTGTTTGATTCTTCCCCGTAGGTTTTGT
GTTCATCGTTATCTAGTTCCCCCTGTTGAAACCCAGTGTTTCTTTCTCCGCTTCGGGAGA
GTCCGATGGGATGTGAGATTCAGTGTTTTAGGCTGGGGGTGCCACGGATGAACAGGCGCG
AGTAGGTTTAGATGCAACGTTACTGCGAGTGGCGGAGATTTACTTTCCGAAGAACTCTTG
CCTCGCCACGGATGATTCATGATGGCCGTGCGGCAACTGCGCGCATGCGGnGCTTGCAGG
AGTGAGGAGAGTGTTGCTTGTCGTGTGCAACTGGATGGCGTATTGTGGG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000967A_C01 KCC000967A_c01
         (649 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_288846.1| hypothetical protein XP_288846 [Mus musculus]         37  0.19
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin...    36  0.56
dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]                        36  0.56
pir||T02345 hypothetical protein KIAA0324 - human (fragment) gi|...    36  0.56
dbj|BAA83717.1| RNA binding protein [Homo sapiens]                     36  0.56

>ref|XP_288846.1| hypothetical protein XP_288846 [Mus musculus]
          Length = 414

 Score = 37.4 bits (85), Expect = 0.19
 Identities = 39/123 (31%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
 Frame = -2

Query: 357 KPTGKNQTTTVAEWHEPPPLTWPTLR----EGNVTNRAHA-RQEPQTVLTELALNRSVRH 193
           +PT +  TT  A   E PPL  PTLR     G  T RAH  R   Q   T+ A  +   H
Sbjct: 198 EPTLRGSTTQRAHHSEGPPLREPTLRGPTLRGPTTQRAHTQRAHTQRAHTQRAHTQRAHH 257

Query: 192 -------RTTFRCSGTKVSVARR----RSQAQCAPYPT*P----PPQPLPALKGPTTQPR 58
                    T R    +    +R    R+  Q A +   P    PP   P L+GPT +  
Sbjct: 258 SEGPPLREPTLRGPTLRGPTTQRAHTQRAHTQRAHHSEGPHLEGPPLRGPTLRGPTLREP 317

Query: 57  TPR 49
           T R
Sbjct: 318 TLR 320

>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
            element binding factor [Homo sapiens]
            gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
            sapiens]
          Length = 2752

 Score = 35.8 bits (81), Expect = 0.56
 Identities = 31/131 (23%), Positives = 53/131 (39%)
 Frame = -2

Query: 426  SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
            S SP  ++ +   +R       T PT + ++ +        P  W   R    +   H R
Sbjct: 1822 SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 1875

Query: 246  QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
               +T L     +RS     + R S ++ SV RRRS+++ +P          P +    +
Sbjct: 1876 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 1935

Query: 66   QPRTPRTNNRT 34
            + RTP T  R+
Sbjct: 1936 RSRTPTTRRRS 1946

>dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]
          Length = 1783

 Score = 35.8 bits (81), Expect = 0.56
 Identities = 31/131 (23%), Positives = 53/131 (39%)
 Frame = -2

Query: 426  SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
            S SP  ++ +   +R       T PT + ++ +        P  W   R    +   H R
Sbjct: 853  SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 906

Query: 246  QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
               +T L     +RS     + R S ++ SV RRRS+++ +P          P +    +
Sbjct: 907  SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 966

Query: 66   QPRTPRTNNRT 34
            + RTP T  R+
Sbjct: 967  RSRTPTTRRRS 977

>pir||T02345 hypothetical protein KIAA0324 - human (fragment)
            gi|2996650|gb|AAC08453.1| KIAA0324 [Homo sapiens]
          Length = 1791

 Score = 35.8 bits (81), Expect = 0.56
 Identities = 31/131 (23%), Positives = 53/131 (39%)
 Frame = -2

Query: 426  SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
            S SP  ++ +   +R       T PT + ++ +        P  W   R    +   H R
Sbjct: 854  SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 907

Query: 246  QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
               +T L     +RS     + R S ++ SV RRRS+++ +P          P +    +
Sbjct: 908  SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 967

Query: 66   QPRTPRTNNRT 34
            + RTP T  R+
Sbjct: 968  RSRTPTTRRRS 978

>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
          Length = 1275

 Score = 35.8 bits (81), Expect = 0.56
 Identities = 31/131 (23%), Positives = 53/131 (39%)
 Frame = -2

Query: 426 SDSPEAEKETLGFNRGN*ITMNTKPTGKNQTTTVAEWHEPPPLTWPTLREGNVTNRAHAR 247
           S SP  ++ +   +R       T PT + ++ +        P  W   R    +   H R
Sbjct: 345 SRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS-----RTSPAPWKRSRS-RASPATHRR 398

Query: 246 QEPQTVLTELALNRSVRHRTTFRCSGTKVSVARRRSQAQCAPYPT*PPPQPLPALKGPTT 67
              +T L     +RS     + R S ++ SV RRRS+++ +P          P +    +
Sbjct: 399 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 458

Query: 66  QPRTPRTNNRT 34
           + RTP T  R+
Sbjct: 459 RSRTPTTRRRS 469

EST assemble image

clone accession position 1 LC027d12_r AV620833 1 499 2 MX044h01_r BP087847 106 459 3 MX042h03_r BP087751 106 459 4 CM007e01_r AV386789 145 649

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