KCC000959A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000959A_C01 KCC000959A_c01
cCTGCTACCAGCTCCTCACCAGAACGCGAGCTTGCGCTGTCGATAAGCGCCCAACTTGTG
ACCATGCACACGCTGTCGGCAACCCACCTTAAGGCTCCTCGCCTGGCTGCTACACCACGG
AGGCTTCAAGCTCTAGCCACAGTCCCCCGCGCAGCGGCAGTAGGGGGCCCCGTGGCAACC
CGGCCTCTGCTTCTTCACGCGGGCGAGACGACGATTTCGCTGCCCTTTTCCAACGAAAAG
GCACAAGAGCTCCAGGTCGCCATCCAGAAGCTGTTTCAGACATTTGCGGAGAAGCAGAAA
GCGCAAAGGCCAAAGCGATGGGACATGATGGAGTGGCAGCACAAGGACGAGCAAGTGGGC
ATCGAGATCTTCTGCAACCCTAACGCTCACACCACGGCCTTTGACGCCAAGCTGCTGGTC
ACGCTATGGTCCCAGGGCGCCGTTAGCGGAAGCGGGCTCAAGGTGACGACGGAGGCGCGG
CTGAGCACGTTCACCTCGGACCTCGACAGCTTGCTGCAGGGCTGAGCGGAGCTGGGGTAA
AGCCCCGAAGACCACGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000959A_C01 KCC000959A_c01
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_441633.1| unknown protein [Synechocystis sp. PCC 6803] gi...    59  4e-08
ref|NP_484109.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    56  3e-07
ref|ZP_00109052.1| hypothetical protein [Nostoc punctiforme]           55  8e-07
ref|ZP_00070938.1| hypothetical protein [Trichodesmium erythraeu...    52  4e-06
ref|NP_681443.1| ORF_ID:tlr0654~hypothetical protein [Thermosyne...    49  6e-05

>ref|NP_441633.1| unknown protein [Synechocystis sp. PCC 6803] gi|7459817|pir||S75854
           hypothetical protein slr1533 - Synechocystis sp. (strain
           PCC 6803) gi|1653399|dbj|BAA18313.1|
           ORF_ID:slr1533~unknown protein [Synechocystis sp. PCC
           6803]
          Length = 115

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
 Frame = +1

Query: 178 TRPLLLHAGETTISLPFSNEKAQELQVAIQKLFQTF----AEKQKAQRPKRWDMMEWQHK 345
           T PL L+  + ++  PFS E A  LQ  I +L        A+  +  RP++   +E+ H 
Sbjct: 2   TAPLTLNLLQGSVRFPFSAEAAITLQGEINQLVNQLKAIGAQVNQGGRPEKQQNLEYCHS 61

Query: 346 DEQVGIEIFCNPNAHTTAFDAKLLVTLWSQGAVSGSGLKVTTEARLSTFTSDLDSLL 516
            E V +E+FCNPN + + F AK+L+TL          +++TTEA L     DL   L
Sbjct: 62  GE-VFLEVFCNPNIYPSPFAAKVLLTL------RDDRIRLTTEAELPRLIEDLAEYL 111

>ref|NP_484109.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25337324|pir||AI1814
           hypothetical protein all0065 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17135043|dbj|BAB77589.1|
           ORF_ID:all0065~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 116

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
 Frame = +1

Query: 172 VATRPLLLHAGETTISLPFSNEKAQELQVAIQKLFQTFAEKQKAQRPKRWDMMEWQHKDE 351
           +++ PL+L+  E ++S  FS + A+EL+ AI +L ++   K  + +P     +  Q   E
Sbjct: 1   MSSTPLVLNLVEGSVSFSFSPQAARELKAAINQLMESL--KAVSTKPASGSKVNPQPPLE 58

Query: 352 -----QVGIEIFCNPNAHTTAFDAKLLVTLWSQGAVSGSGLKVTTEARLSTFTSDLDSLL 516
                 V +EIFCNPN   T F AK+L+T      +    +++TTEA L+    D++  L
Sbjct: 59  YRYTGDVFLEIFCNPNIWPTPFAAKVLLT------IRDVSIRLTTEAELTRVIEDINQYL 112

Query: 517 Q 519
           +
Sbjct: 113 E 113

>ref|ZP_00109052.1| hypothetical protein [Nostoc punctiforme]
          Length = 117

 Score = 54.7 bits (130), Expect = 8e-07
 Identities = 38/117 (32%), Positives = 60/117 (50%), Gaps = 5/117 (4%)
 Frame = +1

Query: 184 PLLLHAGETTISLPFSNEKAQELQVAIQKLFQTFAEKQKAQRPKRWDM-----MEWQHKD 348
           PL L+  E ++S  FS + A+EL+ A  +L +          P    +     ME+++  
Sbjct: 5   PLTLNLIEGSVSFSFSPQAARELKTATDQLMERLKAVAAKPTPGGGKVTPQPPMEYRYTG 64

Query: 349 EQVGIEIFCNPNAHTTAFDAKLLVTLWSQGAVSGSGLKVTTEARLSTFTSDLDSLLQ 519
           E V +EIFCNPN   T F AK+L+T      V    +++TTEA L+    D++  L+
Sbjct: 65  E-VFLEIFCNPNIWPTPFAAKVLLT------VRNVNIRLTTEAELTRIIEDINQYLE 114

>ref|ZP_00070938.1| hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 118

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
 Frame = +1

Query: 172 VATRPLLLHAGETTISLPFSNEKAQELQVAIQKLFQ---TFAEKQ---KAQRPKRWDMME 333
           ++T  L L+  E +IS  F+ E A+ LQ AI +L +   + A K     + +P      E
Sbjct: 1   MSTSKLTLNLVEGSISFDFTPEAARNLQSAIAELIKQLKSVAAKTATGSSGKPTPQKPTE 60

Query: 334 WQHKDEQVGIEIFCNPNAHTTAFDAKLLVTLWSQGAVSGSGLKVTTEARLSTFTSDLDSL 513
           +++  + V +EIFCNPN   + F AKLL+TL  +       +++TTEA L+    D++  
Sbjct: 61  YRYTGD-VFLEIFCNPNIWPSPFAAKLLITLRDE------RIRITTEAELTRVYDDINQY 113

Query: 514 L 516
           L
Sbjct: 114 L 114

>ref|NP_681443.1| ORF_ID:tlr0654~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22294375|dbj|BAC08205.1|
           ORF_ID:tlr0654~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 117

 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 31/101 (30%), Positives = 49/101 (47%)
 Frame = +1

Query: 217 SLPFSNEKAQELQVAIQKLFQTFAEKQKAQRPKRWDMMEWQHKDEQVGIEIFCNPNAHTT 396
           S P +    QE+Q  ++++      K           ME+QH  E V +E+FCNPN    
Sbjct: 20  SRPAAEALRQEIQALMERMRAIARAKASGTPLSAQAAMEYQHVGE-VFLEVFCNPNIWPN 78

Query: 397 AFDAKLLVTLWSQGAVSGSGLKVTTEARLSTFTSDLDSLLQ 519
            + AK+L+T      V    +++TTEA L+    DL+  L+
Sbjct: 79  PYAAKVLLT------VRDDRIRLTTEAELNRLVEDLNQFLE 113



EST assemble image


clone accession position
1 HC046a05_r AV635407 1 461
2 MX243d03_r BP091730 2 506
3 CM006h11_r AV387206 2 558




Chlamydomonas reinhardtii
Kazusa DNA Research Institute