Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000957A_C01 KCC000957A_c01
(771 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyc... 50 3e-05
pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|... 48 2e-04
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 45 0.001
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 45 0.001
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 45 0.001
>ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyces avermitilis
MA-4680] gi|29605870|dbj|BAC69934.1| putative
protoporphyrinogen oxidase [Streptomyces avermitilis
MA-4680]
Length = 474
Score = 50.4 bits (119), Expect = 3e-05
Identities = 59/216 (27%), Positives = 75/216 (34%), Gaps = 39/216 (18%)
Frame = -2
Query: 755 AINCGVAG*WCA-CAPQRPPPPCLPMILPLRPDCQCAARPDTRWG-------GGVLPRAA 600
A+ C W + C P+ PP C P P RP ++ RW G P+AA
Sbjct: 271 AVVCCTPTPWSSPCPPRPPPSCCAPRHPPPRPSWPASSTRPWRWSPSPTAAVGPASPKAA 330
Query: 599 APSCSSWRTAPWWRRWTRPCPWRRAPQRSRRSAPEARANRPTRRTCCPCGH*RSDFLPQ- 423
A SC P AP R RRS P + A TR C C RS +
Sbjct: 331 ASSC---------------LPSTGAPSRHRRSPPRSGAGSRTRTPTCWCCARRSGGTARR 375
Query: 422 -------------------PHPGW------GASRKGPATGRRPPCPSARSW-----RFPG 333
P W AS GP R P + R+W P
Sbjct: 376 RSSAGTTPASWTSRATTCARRPAWPPRRSPAASPAGPTACRSTPSATTRAWPASATTSPS 435
Query: 332 *ERVATAARQLSAAAAGRRP*QREP*RHDSFAATDR 225
+AAR+ +A+A+ R P S+AAT R
Sbjct: 436 CPASPSAARRTTASASRPASPARTP-PWSSWAATAR 470
>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
sapiens]
Length = 580
Score = 48.1 bits (113), Expect = 2e-04
Identities = 52/156 (33%), Positives = 59/156 (37%), Gaps = 13/156 (8%)
Frame = +3
Query: 150 PYQAPLTRASPSESVGTQLPSTSPASVSRGE*IVSSRLALSRPSACGSSGKLSRRSRHPL 329
P +A L R P S + P SP + SR S L R S GS + S P
Sbjct: 73 PTRASLMRTPPRASPTRKPPRASPRTPSRA----SPTRRLPRASPMGSPHRASPMRTPPR 128
Query: 330 LTRKA-P*TRGRARWPSARG------WALSRRTPARMWLG*KVRSSVTARATRTP----- 473
+ P T PS+ A TP R W RS TA TRTP
Sbjct: 129 ASPTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRAWA---TRSPSTASLTRTPSRASL 185
Query: 474 -RWAVRARLRCRPPRPLRRSAPRARPRPTPPPRSCT 578
RW RA PPR R + RA P TPP S T
Sbjct: 186 TRWPPRASPTRTPPRESPRMSHRASPTRTPPRASPT 221
Score = 37.0 bits (84), Expect = 0.35
Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Frame = +3
Query: 132 SPVQPCPYQAPLTRASPSESVGTQLPSTSPASVSRGE*IVSSRLAL-SRPSACGSSGKLS 308
+P + P P +RASP+ + + SP+ S SR +L PS G S
Sbjct: 328 TPPRASPTGTP-SRASPTGTPSRASLTGSPSRASLTG--TPSRASLIGTPSRASLIGTPS 384
Query: 309 RRSRHPLLTRKAP*TRGRARWPSARGWALSRRTPARMWLG*KVRSSVTARATRTPRWAV- 485
R S LT P RA A RTP+R L R+ ++ TRTP A
Sbjct: 385 RAS----LTGTPP----RASLTGTSSTASLTRTPSRASL---TRTQSSSSLTRTPSMASL 433
Query: 486 -----RARLRCRPPRP-LRRSAPRARPRPTPPPRSCT 578
RA L PPR L R+ PRA TPP S T
Sbjct: 434 TRTPPRASLTRTPPRASLTRTPPRASLTRTPPRASLT 470
Score = 32.7 bits (73), Expect = 6.6
Identities = 51/165 (30%), Positives = 65/165 (38%), Gaps = 16/165 (9%)
Frame = +3
Query: 132 SPVQPCPYQAPLTRASPSESVGTQLPSTSPASVSRGE*IVSSRLALSRPSACGSSGKLSR 311
SP P +P +P + T+ PST AS++R SR +L+R S +
Sbjct: 148 SPTGTPPRASPT--GTPPRAWATRSPST--ASLTR----TPSRASLTRWPPRASPTRTPP 199
Query: 312 RSRHPLLTRKAP*TRGRARWPSARG--WALSRRTPARMWLG*KVRSSVTARATRTPRWAV 485
R P ++ +A TR R R A RTP R L R+S A TR P A
Sbjct: 200 RES-PRMSHRASPTRTPPRASPTRRPPRASPTRTPPRESL----RTSHRASPTRMPPRAS 254
Query: 486 RARLRCR--------------PPRPLRRSAPRARPRPTPPPRSCT 578
R R PPR R+ PRA P TP S T
Sbjct: 255 PTRRPPRASPTGSPPRASPMTPPRASPRTPPRASPTTTPSRASLT 299
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 45.4 bits (106), Expect = 0.001
Identities = 54/181 (29%), Positives = 73/181 (39%), Gaps = 1/181 (0%)
Frame = +3
Query: 177 SPSESVGTQLPSTSPASVSRGE*IVSSRLALSRPSACGSSGKLSR-RSRHPLLTRKAP*T 353
+PS +G S SPA+ RG SR R + S + R RS ++P
Sbjct: 266 TPSRRMGR---SRSPATAKRGR--SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQR 320
Query: 354 RGRARWPSARGWALSRRTPARMWLG*KVRSSVTARATRTPRWAVRARLRCRPPRPLRRSA 533
RGR+R P GW+ SR T R S +AR R+ + R R R P RR
Sbjct: 321 RGRSRSPQRPGWSRSRNTQRR-------GRSRSARRGRSHSRSPATRGRSRSRTPARRGR 373
Query: 534 PRARPRPTPPPRSCTP**TRWCSGTRQNAATPPXIGAGGALAVGAQRQDHGQARWRRPLR 713
R+R RS TP + R + TP G + +R +R R P+R
Sbjct: 374 SRSRTPARRRSRSRTP------TRRRSRSRTPARRGRSRSRTPARRR-----SRTRSPVR 422
Query: 714 R 716
R
Sbjct: 423 R 423
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 45.4 bits (106), Expect = 0.001
Identities = 54/181 (29%), Positives = 73/181 (39%), Gaps = 1/181 (0%)
Frame = +3
Query: 177 SPSESVGTQLPSTSPASVSRGE*IVSSRLALSRPSACGSSGKLSR-RSRHPLLTRKAP*T 353
+PS +G S SPA+ RG SR R + S + R RS ++P
Sbjct: 441 TPSRRMGR---SRSPATAKRGR--SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQR 495
Query: 354 RGRARWPSARGWALSRRTPARMWLG*KVRSSVTARATRTPRWAVRARLRCRPPRPLRRSA 533
RGR+R P GW+ SR T R S +AR R+ + R R R P RR
Sbjct: 496 RGRSRSPQRPGWSRSRNTQRR-------GRSRSARRGRSHSRSPATRGRSRSRTPARRGR 548
Query: 534 PRARPRPTPPPRSCTP**TRWCSGTRQNAATPPXIGAGGALAVGAQRQDHGQARWRRPLR 713
R+R RS TP + R + TP G + +R +R R P+R
Sbjct: 549 SRSRTPARRRSRSRTP------TRRRSRSRTPARRGRSRSRTPARRR-----SRTRSPVR 597
Query: 714 R 716
R
Sbjct: 598 R 598
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 45.4 bits (106), Expect = 0.001
Identities = 54/181 (29%), Positives = 73/181 (39%), Gaps = 1/181 (0%)
Frame = +3
Query: 177 SPSESVGTQLPSTSPASVSRGE*IVSSRLALSRPSACGSSGKLSR-RSRHPLLTRKAP*T 353
+PS +G S SPA+ RG SR R + S + R RS ++P
Sbjct: 476 TPSRRMGR---SRSPATAKRGR--SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQR 530
Query: 354 RGRARWPSARGWALSRRTPARMWLG*KVRSSVTARATRTPRWAVRARLRCRPPRPLRRSA 533
RGR+R P GW+ SR T R S +AR R+ + R R R P RR
Sbjct: 531 RGRSRSPQRPGWSRSRNTQRR-------GRSRSARRGRSHSRSPATRGRSRSRTPARRGR 583
Query: 534 PRARPRPTPPPRSCTP**TRWCSGTRQNAATPPXIGAGGALAVGAQRQDHGQARWRRPLR 713
R+R RS TP + R + TP G + +R +R R P+R
Sbjct: 584 SRSRTPARRRSRSRTP------TRRRSRSRTPARRGRSRSRTPARRR-----SRTRSPVR 632
Query: 714 R 716
R
Sbjct: 633 R 633
Score = 35.4 bits (80), Expect = 1.0
Identities = 51/179 (28%), Positives = 70/179 (38%), Gaps = 14/179 (7%)
Frame = +3
Query: 132 SPVQPCPYQAPLTRASPSE-----------SVGTQLPSTSPASVSRGE*IVSSRLALSRP 278
S P P++ +RASP+ S TSP S R SR +++R
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR----SRTSVTRR 1909
Query: 279 SACGSSGKLSRR---SRHPLLTRKAP*TRGRARWPSARGWALSRRTPARMWLG*KVRSSV 449
+ + +SRR SR P +TR+ R R+R P+ R + SR P V
Sbjct: 1910 RSRSRASPVSRRRSRSRTPPVTRR----RSRSRTPTTRRRSRSRTPP------------V 1953
Query: 450 TARATRTPRWAVRARLRCRPPRPLRRSAPRARPRPTPPPRSCTP**TRWCSGTRQNAAT 626
T R +R+ PP RRS R P RS T TR S +R + T
Sbjct: 1954 TRRRSRSRT----------PPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 2002
Score = 33.1 bits (74), Expect = 5.0
Identities = 55/224 (24%), Positives = 82/224 (36%), Gaps = 16/224 (7%)
Frame = +1
Query: 49 SYSDQKGPDPLCILLASSSGSCNNGCNPAQFNRAHTRLR*QEH----RLPSRSERSCPQP 216
S + K P P + S SGS + G P+ + T EH R R RS P+P
Sbjct: 1620 SSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESS-PEHPPKSRTARRGSRSSPEP 1678
Query: 217 -ALLRSVAANESCRQGSRCQGR-RPAAAAESCLAAVATLS*PGKRHERADGQGGLRPV-- 384
R+ S R + R + + S ++ T S RH R+ P
Sbjct: 1679 KTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEK 1738
Query: 385 ---AGPFRDAPQP---GCGWGRKSDLQ*PQG-QHVRLVGRFARASGADRRDRCGARRQGH 543
+ R A P +S P+G Q R R + RRDR G+ +
Sbjct: 1739 SRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTS 1798
Query: 544 GRVQR-RHQGAVRHDEQDGAAARGKTPPPHLVSGRAAHWQSGRS 672
R QR R + V + G+ ++P S ++ + GRS
Sbjct: 1799 RRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRS 1842
