KCC000953A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000953A_C01 KCC000953A_c01
ATATGTACGTGATGCAACTTCTTCCATAGCTTCAAACGAAGCCAGCAACAGAATGGCATC
CCCCTCGCCTACTAGCGTAGCAGACTTTTTCCTAAATACCACAGCCGATGACGTATTGAA
TGCAATTGGCAAAATTGATTACCACAAAGGGCAGGACGAGTCCTCCCTCAGCTTCGTCAC
AAGGAACACATGGGCTGTCGCGTTAATTGGCATGATGGTCATCCTGTTCGGCTTCCTGCT
GTGCGCAGCAGCCATCATCTGCCAATGCTGCTGCGACCGCAAGGGACTGTGCCGCGGCAA
GTGCGGATGCTGCCGCTGCTGCAACTGCTGCAAGCCGGACGACGTCCCGGAGGGAAAGAA
AGCACCAAGCGCCACAGACGGGGCGGTCCCTCCCGCGGGGCAATTCATGACGGCATAGCC
CGCAACTGCAGCAGCGGGGCCAACTCGAACACAATAAGGGTTTCACGCCGGGGGTATTTA
CTTATTACCGTAAGACAGGCAGCTGAACACCTGTCTGTGGTCTTGGGGTCCGTGTGACGT
ACCGGTGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000953A_C01 KCC000953A_c01
         (549 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_494936.1| putative secreted or extracellular protein fami...    42  0.004
ref|NP_494943.1| putative secreted or extracellular protein prec...    42  0.004
ref|NP_777086.1| solute carrier family 34 (sodium phosphate), me...    42  0.004
ref|NP_495859.1| putative secreted or extracellular protein prec...    42  0.004
emb|CAE17915.1| Hypothetical protein R13H4.8 [Caenorhabditis ele...    42  0.004

>ref|NP_494936.1| putative secreted or extracellular protein family member precursor
           (2F356) [Caenorhabditis elegans] gi|7496569|pir||T15651
           hypothetical protein C27A2.5 - Caenorhabditis elegans
           gi|13592364|gb|AAK31463.1| Hypothetical protein C27A2.5
           [Caenorhabditis elegans]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 15/32 (46%), Positives = 16/32 (49%)
 Frame = +2

Query: 242 CAAAIICQCCCDRKGLCRGKCGCCRCCNCCKP 337
           C     C CCC R   C   C C RCC CC+P
Sbjct: 86  CCCRPKCCCCCRRCCTCCRTCCCTRCCTCCRP 117

>ref|NP_494943.1| putative secreted or extracellular protein precursor (2F392)
           [Caenorhabditis elegans]
           gi|14573761|gb|AAK68161.1|U55854_9 Hypothetical protein
           C04G6.7 [Caenorhabditis elegans]
          Length = 197

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 15/32 (46%), Positives = 16/32 (49%)
 Frame = +2

Query: 242 CAAAIICQCCCDRKGLCRGKCGCCRCCNCCKP 337
           C     C CCC R   C   C C RCC CC+P
Sbjct: 87  CCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRP 118

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +2

Query: 260 CQCCCDRKGLCRGKCGCC----RCCNCCK 334
           C C C   G   G CGCC    RCC CC+
Sbjct: 70  CGCGCCGCGGGGGGCGCCCCRPRCCCCCR 98

>ref|NP_777086.1| solute carrier family 34 (sodium phosphate), member 2 [Bos taurus]
           gi|1083083|pir||S49228 sodium-dependent phosphate
           transporter - bovine gi|547484|emb|CAA57345.1|
           sodium-dependent phosphate transporter [Bos taurus]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 266 CCCDRK--GLCRGKCGCCRCCNCCK-PDDVPEGKKAP 367
           CCC R    LC G CGC +CC C K  +D+ EGK  P
Sbjct: 618 CCCCRVCCRLCCGLCGCSKCCRCTKCSEDLEEGKDEP 654

>ref|NP_495859.1| putative secreted or extracellular protein precursor (2J24)
           [Caenorhabditis elegans] gi|7506829|pir||T24272
           hypothetical protein T01B7.8 - Caenorhabditis elegans
           gi|3879236|emb|CAA91301.1| Hypothetical protein T01B7.8
           [Caenorhabditis elegans]
          Length = 164

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 15/32 (46%), Positives = 16/32 (49%)
 Frame = +2

Query: 242 CAAAIICQCCCDRKGLCRGKCGCCRCCNCCKP 337
           C     C CCC R   C   C C RCC CC+P
Sbjct: 85  CCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRP 116

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +2

Query: 260 CQCCCDRKGLCRGKCGCC----RCCNCCK 334
           C C C   G   G CGCC    RCC CC+
Sbjct: 68  CGCGCCGCGGGGGGCGCCCCRPRCCCCCR 96

>emb|CAE17915.1| Hypothetical protein R13H4.8 [Caenorhabditis elegans]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 15/32 (46%), Positives = 16/32 (49%)
 Frame = +2

Query: 242 CAAAIICQCCCDRKGLCRGKCGCCRCCNCCKP 337
           C     C CCC R   C   C C RCC CC+P
Sbjct: 87  CCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRP 118



EST assemble image


clone accession position
1 LC078b08_r AV624469 1 619
2 HC033a12_r AV634415 84 607
3 CM005g02_r AV386867 106 572
4 MX235c12_r BP091205 113 412
5 CM098b01_r AV392899 115 646




Chlamydomonas reinhardtii
Kazusa DNA Research Institute