KCC000946A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000946A_C01 KCC000946A_c01
GAACCTGCAGAGCACTCACTGTGCATGTATGAGCCACGAGTAGAACGAGACCGCTCTTCC
CCGTTCCTGAAACTGTAACAGTGTTTTTCGTTTGCATGTGGTTTTCTGGCCATACTCATT
AAGATAATAGTGGCATTCACAACGCTTTAGCAAATGAAAAATATCCTTGGGCTAGTGCAA
GGAGCTACAGCCCGCATTGATTTAGAATTCAAGAACGAGCGGGGCCAGCCCTACAAGAAG
ACAGTTCCCGTCAAGGCCAAAAATGGCGAGACGGAGGAGCTGCCGCTCTACACTAACAAA
GACGACATCCTGGGCGAGATCCGTGTCACGCCCCTGACTACCAAGAAGTTTGAGCACCAG
GGCATCCGGGTGCAGCTCATCGGTCAGATTGAGCTTGCCTCAGAGCGGGGTCAACCGCAC
GACTTTGTGAGCCTGGTGCGCGAGCTGGCTCCGGGCGGCGACCTGTCTGCCTCCAAGACC
TTCCCCTTTGAGTTCCGCAATGTGGAGCTGCAATACGACTCGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000946A_C01 KCC000946A_c01
         (524 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_194499.2| expressed protein [Arabidopsis thaliana] gi|254...    97  1e-19
gb|AAB03668.1| PepA                                                    95  6e-19
ref|NP_200165.1| vacuolar sorting protein-related; embryogenesis...    93  2e-18
ref|XP_316201.1| ENSANGP00000017705 [Anopheles gambiae] gi|21298...    90  2e-17
ref|XP_331942.1| hypothetical protein [Neurospora crassa] gi|289...    87  1e-16

>ref|NP_194499.2| expressed protein [Arabidopsis thaliana]
           gi|25453460|sp|Q9T091|VP26_ARATH Vacuolar protein
           sorting 26 homolog (VPS26 protein homolog)
           gi|20453083|gb|AAM19785.1| AT4g27690/T29A15_180
           [Arabidopsis thaliana] gi|21689605|gb|AAM67424.1|
           AT4g27690/T29A15_180 [Arabidopsis thaliana]
          Length = 303

 Score = 97.4 bits (241), Expect = 1e-19
 Identities = 50/123 (40%), Positives = 79/123 (63%)
 Frame = +1

Query: 154 MKNILGLVQGATARIDLEFKNERGQPYKKTVPVKAKNGETEELPLYTNKDDILGEIRVTP 333
           M  +LG  + A   I + F + +    +K VP+K +NG+T  +PL+ ++D I G++ + P
Sbjct: 1   MNYLLGAFKPA-CNISITFSDGKN---RKQVPMKKENGQTALVPLFHSQDTISGKVCIEP 56

Query: 334 LTTKKFEHQGIRVQLIGQIELASERGQPHDFVSLVRELAPGGDLSASKTFPFEFRNVELQ 513
              KK EH G++V+L+GQIE+  +RG  +DF SLVREL   G++   KT+PFEF  VE+ 
Sbjct: 57  YQGKKVEHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFPTVEMP 116

Query: 514 YDS 522
           Y++
Sbjct: 117 YET 119

>gb|AAB03668.1| PepA
          Length = 349

 Score = 94.7 bits (234), Expect = 6e-19
 Identities = 48/115 (41%), Positives = 73/115 (62%), Gaps = 1/115 (0%)
 Frame = +1

Query: 181 GATARIDLEFKNERGQPYKKTVPVKAKNGETEELPLYTNKDDILGEIRVT-PLTTKKFEH 357
           G    ++ E  N +    +KT+ V    G+TE+L ++   + + G++ +     TKK EH
Sbjct: 9   GTPCNVEFELDNCQN---RKTIEVTQDKGKTEKLFVFIGNEPVSGKVSINIKEKTKKIEH 65

Query: 358 QGIRVQLIGQIELASERGQPHDFVSLVRELAPGGDLSASKTFPFEFRNVELQYDS 522
            GIRV+ +GQIEL  +RG  ++F SLVRELAP G+L+ +KTF ++F NVE QY+S
Sbjct: 66  TGIRVEFVGQIELFYDRGNHYEFTSLVRELAPAGELTENKTFSYDFSNVEKQYES 120

>ref|NP_200165.1| vacuolar sorting protein-related; embryogenesis protein H beta
           58-like protein [Arabidopsis thaliana]
           gi|9759192|dbj|BAB09729.1| vacuolar sorting
           protein-like; embryogenesis protein H beta 58-like
           protein [Arabidopsis thaliana]
          Length = 302

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 48/123 (39%), Positives = 76/123 (61%)
 Frame = +1

Query: 154 MKNILGLVQGATARIDLEFKNERGQPYKKTVPVKAKNGETEELPLYTNKDDILGEIRVTP 333
           M  +LG  + A   I + F + +    +K VP K  NG+    PL+ +++ I G+I + P
Sbjct: 1   MNYLLGAFKPA-CNISITFTDGKN---RKQVPTKKDNGQIVMNPLFQSQETIAGKINIEP 56

Query: 334 LTTKKFEHQGIRVQLIGQIELASERGQPHDFVSLVRELAPGGDLSASKTFPFEFRNVELQ 513
              KK EH G++V+L+GQIE+  +RG  +DF SLVRE+   G++   KT+PFEF +VE+ 
Sbjct: 57  YQGKKVEHNGVKVELLGQIEMYFDRGNFYDFTSLVREIDVPGEIYERKTYPFEFSSVEMP 116

Query: 514 YDS 522
           Y++
Sbjct: 117 YET 119

>ref|XP_316201.1| ENSANGP00000017705 [Anopheles gambiae] gi|21298687|gb|EAA10832.1|
           ENSANGP00000017705 [Anopheles gambiae str. PEST]
          Length = 438

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 48/114 (42%), Positives = 73/114 (63%), Gaps = 1/114 (0%)
 Frame = +1

Query: 181 GATARIDLEFKNERGQPYKKTVPVKAKNGETEELPLYTNKDDILGEIRVT-PLTTKKFEH 357
           G +A ID+ F    G   ++   +K ++G+ ++  LY + + + G++ +T      K EH
Sbjct: 40  GQSADIDVVFD---GAENRQQAEIKTEDGKKDKYLLYYDGETVGGKVNITLKKPGSKLEH 96

Query: 358 QGIRVQLIGQIELASERGQPHDFVSLVRELAPGGDLSASKTFPFEFRNVELQYD 519
           QGI+++LIGQIEL  +RG  HDF+SLVRELA  GDL  + ++PFEF NVE  Y+
Sbjct: 97  QGIKIELIGQIELYYDRGNHHDFLSLVRELARPGDLIQNTSYPFEFANVEKPYE 150

>ref|XP_331942.1| hypothetical protein [Neurospora crassa] gi|28926931|gb|EAA35892.1|
           hypothetical protein [Neurospora crassa]
          Length = 327

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 43/96 (44%), Positives = 60/96 (61%)
 Frame = +1

Query: 235 KKTVPVKAKNGETEELPLYTNKDDILGEIRVTPLTTKKFEHQGIRVQLIGQIELASERGQ 414
           +  V VK      E+ PLY + + + G + V P   K+ EH GI+VQ IG IE+  +RG 
Sbjct: 21  RSMVDVKLDKNRREKAPLYMDGESVKGAVTVRPKDGKRLEHTGIKVQFIGTIEMFFDRGN 80

Query: 415 PHDFVSLVRELAPGGDLSASKTFPFEFRNVELQYDS 522
            ++F+SLV+ELA  G+L   +TF F FRNVE QY+S
Sbjct: 81  HYEFLSLVQELAAPGELQHPQTFDFNFRNVEKQYES 116



EST assemble image


clone accession position
1 HC009a12_r AV632506 1 604
2 MX233c09_r BP091067 94 380
3 HC026h11_r AV633920 130 637
4 MX054g02_r BP088228 136 603
5 CM004h01_r AV386639 138 334




Chlamydomonas reinhardtii
Kazusa DNA Research Institute