KCC000934A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000934A_C01 KCC000934A_c01
caaaagcttgcgtagaCAAAACCCCGCTGGACCTCTATCGCATCCCACCGAGACAAACTA
ATACTCTGCCTGCGATGGCCAAGCGCGTGCTCATTGCCCTTGCGGCATTCGTGATGCTGA
ACGCTGCTACCGCGACTATCGTCGGAGGCAGCAGCAAGGCGGCCGTTTCGGACCCGGACG
TGGTGCATGCTGCCAACTTTGTGGTCTCCTCGGCCAACACCAACGCCTGCTCGGGCCTGT
GCGCGGGCCTGCAGAAGGAGGGCGAGCTCAAGCTGGTCAAGGTCCTGTCCGCCAGCACGC
AGGTGGTGGCGGGCGTCAACGTGCACCTGGAGCTGCTCATGGCCGATGACACCGGCAAGC
AGACCGTGGTGACCAGCACTGTGTGGAGCCGGCCCTGGCTGGCGTCCAAGAACGACGCCG
CCCAGCCCGCCACCCAGATCACCGCCCTCACCTTCAAGCCCCTGGACGGAACCCTGGAGT
AGAGAGCAGAGCCACAGGCAGCTCGAGGCCCTGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000934A_C01 KCC000934A_c01
         (515 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM64661.1| cystatin-like protein [Arabidopsis thaliana]            56  2e-07
ref|NP_199566.1| expressed protein [Arabidopsis thaliana] gi|975...    56  3e-07
gb|AAP79264.1| ribulose-1,5-bisphosphate carboxylase/oxygenase l...    51  1e-05
ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens]         50  2e-05
gb|AAQ24227.1| plakoglobin [Canis familiaris]                          48  6e-05

>gb|AAM64661.1| cystatin-like protein [Arabidopsis thaliana]
          Length = 122

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = +3

Query: 87  VLIALAAFVM-LNAATATIVGGSSKAA-VSDPDVVHAANFVVSSANTNACSGLCAGLQKE 260
           +L++L   ++ L A+ A  VGG S  + V+DP VV    F VS  N  + SGL       
Sbjct: 9   LLLSLVVLLLPLYASAAARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGL------- 61

Query: 261 GELKLVKVLSASTQVVAGVNVHLELLMADDTGKQTVVTSTVWSRPWLASKN 413
              K   V+S  TQVV+G N  L++   D  G      + VW +PW+  +N
Sbjct: 62  ---KFETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRN 109

>ref|NP_199566.1| expressed protein [Arabidopsis thaliana] gi|9758783|dbj|BAB09081.1|
           gene_id:MNJ7.14~pir||H71431~similar to unknown protein
           [Arabidopsis thaliana] gi|18252839|gb|AAL62346.1|
           putative protein [Arabidopsis thaliana]
           gi|30102850|gb|AAP21343.1| At5g47550 [Arabidopsis
           thaliana]
          Length = 122

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 37/110 (33%), Positives = 52/110 (46%), Gaps = 1/110 (0%)
 Frame = +3

Query: 87  VLIALAAFVMLNAATATIVGGSSKAA-VSDPDVVHAANFVVSSANTNACSGLCAGLQKEG 263
           +L  +   + L A+ A  VGG S  + V+DP VV    F VS  N  + SGL        
Sbjct: 10  LLSLVVVLLPLYASAAARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGL-------- 61

Query: 264 ELKLVKVLSASTQVVAGVNVHLELLMADDTGKQTVVTSTVWSRPWLASKN 413
             K   V+S  TQVV+G N  L++   D  G      + VW +PW+  +N
Sbjct: 62  --KFETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRN 109

>gb|AAP79264.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [uncultured bacterium]
          Length = 157

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 31/157 (19%)
 Frame = +1

Query: 76  WPSACSLPLRHS*C*TLLPRLSSEAAARRPFRTRTWCMLPTLWSPRPTPTPARACARACR 255
           WPSAC+ P   S C       S    AR P+ + T C      S R T   A +  R   
Sbjct: 10  WPSACASPAATS-CIPAPWWASWRVTARPPWASSTSCASR---SCRKTAAAATSSIRTGD 65

Query: 256 R-------RASSSWSRSCPPARRWWRASTCTWSCS--------------------WPMTP 354
           R         ++S   +CPP   WWR+S  T  CS                    WP  P
Sbjct: 66  RCPVCLPWPPAASTCGTCPP---WWRSSVTTRCCSSVVAPTATPGVRPPAPPPTVWPWKP 122

Query: 355 ASRPW*PALCGAG----PGWRPRTTPPSPPPRSPPSP 453
           ASRP  PA+   G      W+P +T PS   RSP  P
Sbjct: 123 ASRPATPAVRSRGNRATSSWKPPSTAPS--WRSPSKP 157

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 32/104 (30%), Positives = 39/104 (36%), Gaps = 9/104 (8%)
 Frame = +1

Query: 31  TSIASHRDKLILCLRWPSACSLPLRHS*C*TLLPRLSSEAAAR------RPFRT---RTW 183
           TS     D+  +CL WP A S       C T  P   S    R       P  T   R  
Sbjct: 58  TSSIRTGDRCPVCLPWPPAAST------CGTCPPWWRSSVTTRCCSSVVAPTATPGVRPP 111

Query: 184 CMLPTLWSPRPTPTPARACARACRRRASSSWSRSCPPARRWWRA 315
              PT+W  +P   PA    R+   RA+SSW    P     WR+
Sbjct: 112 APPPTVWPWKPASRPATPAVRSRGNRATSSWKP--PSTAPSWRS 153

 Score = 34.3 bits (77), Expect = 0.97
 Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
 Frame = -3

Query: 408 WTPARAGSTQC---WSPRSACRCHR----P*AAPGAR*RPPPPACWRTGP*PA*ARPPSA 250
           W PA +    C   W      RC      P A PG R   PPP  W   P    A P   
Sbjct: 73  WPPAASTCGTCPPWWRSSVTTRCCSSVVAPTATPGVRPPAPPPTVWPWKPASRPATPAVR 132

Query: 249 GPRTGPSRRWCWPRRPQSWQHAPRP 175
                 +  W  P    SW+   +P
Sbjct: 133 SRGNRATSSWKPPSTAPSWRSPSKP 157

>ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens]
          Length = 208

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 36/99 (36%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
 Frame = +1

Query: 169 RTRTWCMLPTLWSPRPTPTPARACARACRRRASSSWSRSCPPARRW-WRASTCTWSCSWP 345
           R R WC   T   PRP P  AR  +  CR RA+     + PP   W  R  TC W    P
Sbjct: 12  RARAWCRRSTCCCPRPRPC-ARVASTCCRPRAAPRCPPTPPPGPAWPPRTPTCCWG---P 67

Query: 346 MTPASRPW*PALCGAGPGWRPRTTPPSPPPRSPPSPSSP 462
             P  R    A C   P   P TT P    RS P   +P
Sbjct: 68  GGPQHR---CAGCRHRPACTPTTTTPCTARRSRPGCPTP 103

 Score = 31.6 bits (70), Expect = 6.3
 Identities = 38/125 (30%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
 Frame = -3

Query: 420 RRRSWTPARAGSTQCWSPRSACR----CHRP*AAPGAR*RPPPPACWRTGP*PA*ARPPS 253
           R R+W   R  +  C  PR   R    C RP AAP     PPP   W             
Sbjct: 12  RARAW--CRRSTCCCPRPRPCARVASTCCRPRAAPRCPPTPPPGPAW------------- 56

Query: 252 AGPRTGPSRRWCW-PRRPQ----SWQHAPRPGPKRPPCCCLRR*SR*QRSASRMPQGQ*A 88
             PRT      CW P  PQ      +H P   P     C  RR     R     P G  A
Sbjct: 57  -PPRTPTC---CWGPGGPQHRCAGCRHRPACTPTTTTPCTARR----SRPGCPTPAGAGA 108

Query: 87  RAWPS 73
             WP+
Sbjct: 109 H-WPA 112

>gb|AAQ24227.1| plakoglobin [Canis familiaris]
          Length = 130

 Score = 48.1 bits (113), Expect = 6e-05
 Identities = 39/109 (35%), Positives = 46/109 (41%), Gaps = 11/109 (10%)
 Frame = +1

Query: 70  LRWPSACSLPLRHS*C*TLLPRLSSEAAARRPFR--------TRTWCMLPTLWSPRPTPT 225
           L W SACS P     C T  PR ++    RR  R         R WC   T  +P   P+
Sbjct: 17  LPW-SACSAPRWSQSCFTPSPRCTTCCCTRRAPRWRCAWQMGCRRWCPCSTKTTPSSWPS 75

Query: 226 PARACA---RACRRRASSSWSRSCPPARRWWRASTCTWSCSWPMTPASR 363
           P  AC+    A RR +SSSW    P       A+T   SCS P    SR
Sbjct: 76  PPTACSSWLMATRRASSSSWPMEDPRPLCRSCATTAMRSCSGPPAVCSR 124

 Score = 37.0 bits (84), Expect = 0.15
 Identities = 33/105 (31%), Positives = 38/105 (35%), Gaps = 15/105 (14%)
 Frame = +1

Query: 223 TPARACARACRRRASSSWSRSCPPARRWW--------RASTC-------TWSCSWPMTPA 357
           T  R C  +  R AS  WS    P  RW         R +TC        W C+W M   
Sbjct: 2   TTVRGCLPSSSRAASLPWSACSAP--RWSQSCFTPSPRCTTCCCTRRAPRWRCAWQM--G 57

Query: 358 SRPW*PALCGAGPGWRPRTTPPSPPPRSPPSPSSPWTEPWSREQS 492
            R W P           +TTP S P  SPP+  S W     R  S
Sbjct: 58  CRRWCPC--------STKTTPSSWP--SPPTACSSWLMATRRASS 92



EST assemble image


clone accession position
1 HC031e09_r AV634293 1 515
2 CM019e05_r AV387306 10 501




Chlamydomonas reinhardtii
Kazusa DNA Research Institute