KCC000930A_c02
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000930A_C02 KCC000930A_c02
ctcggaTATTCTTCATCGCCGCATTCTTGATAGAGCTAGCTGCAGACCTTGCACGCATCT
AGGAGCCCTTCCTTTTGATAAAACACGTGTTGTGACTCGGAAAAGATGGCCGCAACTCTT
GTCTCGACCGCGTCCTCCCGCGTTGCGGCCCTGCGCAAGGATGTCAGCTCCTCGGTTCGC
CCCGTGGCGGTGATCGCTCGCCCGTCTGCCAGGATTGCCCGGGCTTGCCCTGTCTCTGCT
ACATCGTCCTCTCGTCGCGCGCAGCTCGTGTGCCGGGCTGCTGGTGCCGTCGCGGGCGCA
ATCCCCACCGTCAAAATCGACAACGTGGTGGACCCCTTTGCGACTGTCCTGACTGTGGAG
TTCGGGGAGAAGAACGTGGAGCTGCTGGACGCGGTGTCCGCCCTGAAGAACCTTGGCCTG
AACATTCGCCGCGCCACCATCAGCGACGGCTCGACTGTCTTCTACATTACGGACGCGGAC
ACCAGCGAGAAGATTGTGAAGTCTGCACGTCTCGAGGATATCCGGATGACCATCCTCAAC
AGCCTGGTGGACAAGTTCCCGGAGGTTGGCGAGGCCTTTGCCTCCGGCTCCAAGACGGAC
TCGGAGCCCAACAAGGTGCTGGGCACCCGTCGCCGCGTGGTGCAGACCACCATTGACGTC
ACGGAGGCCAAGAACGGCGTGTGCTCGCTGCTGCGCATCGTCACCAGCGACCGGCCAGGC
CTGCTGGTGGACATTGTGCGTGTGCTCAAGGACATCAACCTGAACGTGGTGTCGGCGGAG
ATCGAGACGGAGGGCCCGCTGGCTAAGGACGAGTTCTTCATCACCTACCACGGCGAGCCG
CTCAACTCGCCCATGGTGACGCTGGTGACCAACGCGCTGCAGTACTACCTCAGCCTGGGC
GAGCTCAGCAGCAACGAGTCCTACTAGGCAGCAGGGCGGCGGCGGCGGCGGCAGAGCCGC
AGGCGACTGGCAGGGTTGGCACGAGTGGAGCATGTGGAAAGAGCATAGCAATTTAAGTTG
GCTTGGGGACGAGCCAAAGGTCTCGCGTGACACCGTGAACACGTGGACGGGTCTGCATCG
AGCGGACGCGAACAGGCATAGACGATGGACGCAATAGAGGGTTGTTGGGAGCGGGCAACC
TCCTGAGGCCCTGCGCCAGTGGGGCGCGTGCGCTTGAGCGTGGCGGCAGAGGGCGCGGGA
GTGCTGTGAAGCGGCATTGAGGAGGGGTCGCTGCTAGGGGCCTCGTGCTGGTGTGGCCCC
TGGGCGGCGAGGTACGCGAGGAGCGAGCGAGGCGCGCATGCGCGGCAGCAGCGGCGGCGG
TGTGACACCGTTCACAGGGGGCGGCAGGCCGCGTGTCGTCTCGTGGACAGGTGGCAAGGT
CGTCACGT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000930A_C02 KCC000930A_c02
(1388 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64912.1| unknown [Arabidopsis thaliana] 135 2e-30
ref|NP_196094.1| ACT domain-containing protein [Arabidopsis thal... 135 2e-30
ref|NP_564010.1| expressed protein [Arabidopsis thaliana] gi|253... 125 2e-27
dbj|BAA78601.1| hypothetical protein [Chlamydomonas sp. HS-5] 49 5e-09
ref|NP_565304.1| ACT domain-containing protein [Arabidopsis thal... 62 2e-08
>gb|AAM64912.1| unknown [Arabidopsis thaliana]
Length = 301
Score = 135 bits (339), Expect = 2e-30
Identities = 82/202 (40%), Positives = 124/202 (60%), Gaps = 5/202 (2%)
Frame = +1
Query: 301 IPTVKIDNVVDPFATVLTVEFGEKNVELLDAVSALKNLGLNIRRATIS-DGS---TVFYI 468
+P V ID DP AT++ + FG + L+D + ALK+LGL++ + T+S +GS T F I
Sbjct: 94 MPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSI 153
Query: 469 TDADTSEKIVKSARLEDIRMTILNSLVDKFPEVGEAFASGSKTDSE-PNKVLGTRRRVVQ 645
T DT K+ LE IR+TI+N+L+ PE E A G + P K + +
Sbjct: 154 TKRDTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVD---IA 210
Query: 646 TTIDVTEAKNGVCSLLRIVTSDRPGLLVDIVRVLKDINLNVVSAEIETEGPLAKDEFFIT 825
T I V E SLL I T+DRPGL+V++++V+ D+N++V SAEI+TEG +AKD+F ++
Sbjct: 211 THIHVKE-DGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVS 269
Query: 826 YHGEPLNSPMVTLVTNALQYYL 891
Y G+ LN + ++ N L+Y+L
Sbjct: 270 YQGQALNRSLSQVLVNCLRYFL 291
>ref|NP_196094.1| ACT domain-containing protein [Arabidopsis thaliana]
gi|11281139|pir||T48470 hypothetical protein T1E3.100 -
Arabidopsis thaliana gi|7413536|emb|CAB86016.1| putative
protein [Arabidopsis thaliana]
gi|9758449|dbj|BAB08978.1| gene_id:MUK11.6~unknown
protein [Arabidopsis thaliana]
gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis
thaliana] gi|21389645|gb|AAM48021.1| putative protein
[Arabidopsis thaliana]
Length = 301
Score = 135 bits (339), Expect = 2e-30
Identities = 82/202 (40%), Positives = 124/202 (60%), Gaps = 5/202 (2%)
Frame = +1
Query: 301 IPTVKIDNVVDPFATVLTVEFGEKNVELLDAVSALKNLGLNIRRATIS-DGS---TVFYI 468
+P V ID DP AT++ + FG + L+D + ALK+LGL++ + T+S +GS T F I
Sbjct: 94 MPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSI 153
Query: 469 TDADTSEKIVKSARLEDIRMTILNSLVDKFPEVGEAFASGSKTDSE-PNKVLGTRRRVVQ 645
T DT K+ LE IR+TI+N+L+ PE E A G + P K + +
Sbjct: 154 TKRDTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVD---IA 210
Query: 646 TTIDVTEAKNGVCSLLRIVTSDRPGLLVDIVRVLKDINLNVVSAEIETEGPLAKDEFFIT 825
T I V E SLL I T+DRPGL+V++++V+ D+N++V SAEI+TEG +AKD+F ++
Sbjct: 211 THIHVKE-DGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVS 269
Query: 826 YHGEPLNSPMVTLVTNALQYYL 891
Y G+ LN + ++ N L+Y+L
Sbjct: 270 YQGQALNRSLSQVLVNCLRYFL 291
>ref|NP_564010.1| expressed protein [Arabidopsis thaliana] gi|25344189|pir||B86304
hypothetical protein F6I1.12 [imported] - Arabidopsis
thaliana gi|9802776|gb|AAF99845.1|AC051629_12 Unknown
protein [Arabidopsis thaliana]
gi|14423502|gb|AAK62433.1|AF386988_1 Unknown protein
[Arabidopsis thaliana] gi|30023784|gb|AAP13425.1|
At1g16880 [Arabidopsis thaliana]
Length = 290
Score = 125 bits (313), Expect = 2e-27
Identities = 93/276 (33%), Positives = 144/276 (51%), Gaps = 16/276 (5%)
Frame = +1
Query: 112 ATLVSTASSRVAALRKDVSSSVRPVAVIA-----RPSARIARA--CPVSATSSSRRAQLV 270
+ L T +S ALR+D + P + +P + R + +S+ A
Sbjct: 9 SALCFTDASSSLALRRDCGALCLPPRTVTFGFVDKPLVNLERLRLSTLKIRASNATAVEN 68
Query: 271 CRAAGAVAGA----IPTVKIDNVVDPFATVLTVEFGEKNVELLDAVSALKNLGLNIRRAT 438
+ G+ A + P V ID DP ATVL V FG++ LLD ++ALKNLGLN+ +A
Sbjct: 69 GKQEGSAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKAN 128
Query: 439 I----SDGSTVFYITDADTSEKIVKSARLEDIRMTILNSLVDKFPEVGEAFASGSKTDSE 606
+ S F IT AD+ K+ LE IR+T++N+L++ PE A G+
Sbjct: 129 VYLDSSGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVL 188
Query: 607 PNKVLGTRRRVVQTTIDVTEAKNGVC-SLLRIVTSDRPGLLVDIVRVLKDINLNVVSAEI 783
P T V +T +G SLL I ++DRPGLLV++V+++ DI++ V S E
Sbjct: 189 PP----TEPIDVDIATHITIEDDGPDRSLLFIESADRPGLLVELVKIISDISVAVESGEF 244
Query: 784 ETEGPLAKDEFFITYHGEPLNSPMVTLVTNALQYYL 891
+TEG LAK +F ++Y + L P+ ++ N+L+Y+L
Sbjct: 245 DTEGLLAKVKFHVSYRNKALIKPLQQVLANSLRYFL 280
>dbj|BAA78601.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 165
Score = 48.9 bits (115), Expect(2) = 5e-09
Identities = 24/62 (38%), Positives = 33/62 (52%)
Frame = +3
Query: 378 GAAGRGVRPEEPWPEHSPRHHQRRLDCLLHYGRGHQREDCEVCTSRGYPDDHPQQPGGQV 557
GAA G+ P+EPWP+H R + +LH+ G QR+ +VC + G P G V
Sbjct: 89 GAARHGLGPQEPWPQHPQGQGGWRHERVLHHRVGDQRDGHQVCAAGGDPRHRHAVAEGDV 148
Query: 558 PG 563
PG
Sbjct: 149 PG 150
Score = 35.4 bits (80), Expect(2) = 5e-09
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +1
Query: 145 AALRKDVSSSVRP---VAVIARPSARIARACPVSATSSSRRAQLVCRAAGAVAGAIPTVK 315
A+ R+ V + +R A I+R +A A +CP++ R +V RA A P VK
Sbjct: 17 ASRRQSVMAPLRAPTSAAAISR-AADWAPSCPLALPRGRR---VVARAGDT---ATPVVK 69
Query: 316 IDNVVDPFATVLTVEFG 366
IDN+ D FAT++ V+ G
Sbjct: 70 IDNMHDAFATIVKVDIG 86
>ref|NP_565304.1| ACT domain-containing protein [Arabidopsis thaliana]
gi|20197900|gb|AAD20075.2| putative uridylyl transferase
[Arabidopsis thaliana] gi|24030269|gb|AAN41308.1|
putative uridylyl transferase [Arabidopsis thaliana]
Length = 456
Score = 62.4 bits (150), Expect = 2e-08
Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Frame = +1
Query: 304 PTVKIDNVVDPFATVLTVEFGEKNVELLDAVSALKNLGLNIRRATIS-DGS---TVFYIT 471
P V IDN V TV+ V+ K+ LL+ V L L L I++A IS DG VF +T
Sbjct: 25 PRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84
Query: 472 DADTSEKIVKSARLEDIRMTILNSLVDKFPEVGEAFASGSKTDSEPNKVLGTRRRVVQTT 651
D D K+ LE IR ++ P+ F+ ++ +G ++ V T
Sbjct: 85 DQD-GNKVTDEIVLEYIRKSL-------GPDESSCFSPSMRS------TIGVKQSVDYTV 130
Query: 652 IDVTEAKNGVCSLLRIVTSDRPGLLVDIVRVLKDINLNVVSAEIET 789
+++T +DRPGLL ++ VL D+ NVV+AEI T
Sbjct: 131 VELTG-------------TDRPGLLSELCAVLMDLQCNVVNAEIWT 163
Score = 48.1 bits (113), Expect = 4e-04
Identities = 25/76 (32%), Positives = 42/76 (54%)
Frame = +1
Query: 595 TDSEPNKVLGTRRRVVQTTIDVTEAKNGVCSLLRIVTSDRPGLLVDIVRVLKDINLNVVS 774
TD P K R+RV++ + + L + TSDR GLL D+ R+ ++ +L V
Sbjct: 318 TDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIFRENSLTVTR 377
Query: 775 AEIETEGPLAKDEFFI 822
AE++T+G A + F++
Sbjct: 378 AEVKTKGDKALNTFYV 393
Score = 46.2 bits (108), Expect = 0.001
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Frame = +1
Query: 307 TVKIDNVVDPFATVLTVEFGEKNVELLDAVSALKNLGLNIRRATI----SDGSTVFYITD 474
T+ + VD TV+ + ++ L + + L +L N+ A I + + V +TD
Sbjct: 119 TIGVKQSVD--YTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTD 176
Query: 475 ADTSEKIVKSARLEDIRMTILNSLVD-----KFPEVGEAFASG---SKTDSEPNKVLGTR 630
+T I RL IR + L +F E +S + TD + ++++
Sbjct: 177 EETCSAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFAD 236
Query: 631 R----------------RVVQTTIDVTEAKNGVCSLLRIVTSDRPGLLVDIVRVLKDINL 762
R RV+ +DV+ + S++ I DRP LL D V L D+N
Sbjct: 237 RDYDEWENNVDDEDKCGRVIPD-VDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNY 295
Query: 763 NVVSAEIETEGPLAKDEFFITY-HGEPLNS 849
V A I+ EGP A E++I + G P+ S
Sbjct: 296 VVSHASIDAEGPQAYQEYYIRHTDGSPVKS 325
Score = 35.4 bits (80), Expect = 2.4
Identities = 16/54 (29%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +1
Query: 673 NGVC---SLLRIVTSDRPGLLVDIVRVLKDINLNVVSAEIETEGPLAKDEFFIT 825
N VC +++++ ++++ G+L+++V+VL ++NL + A I ++G D F +T
Sbjct: 31 NEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84
EST assemble image
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clone |
accession |
position |
| 1 |
MXL021c03_r |
BP094323 |
1 |
369 |
| 2 |
LC100b10_r |
AV625949 |
8 |
456 |
| 3 |
MX026c07_r |
BP087131 |
11 |
459 |
| 4 |
MXL078h07_r |
BP097642 |
11 |
436 |
| 5 |
HC092b01_r |
AV638886 |
14 |
476 |
| 6 |
MXL095d04_r |
BP098556 |
98 |
548 |
| 7 |
HC096g07_r |
AV639242 |
254 |
640 |
| 8 |
HC091f08_r |
AV638852 |
470 |
888 |
| 9 |
HC094h11_r |
AV639096 |
545 |
914 |
| 10 |
MX205h02_r |
BP089363 |
550 |
907 |
| 11 |
LC071d01_r |
AV623981 |
783 |
1271 |
| 12 |
CM003h12_r |
AV386623 |
850 |
1389 |
| 13 |
MXL024g08_r |
BP094549 |
916 |
1243 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute