KCC000922A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000922A_C01 KCC000922A_c01
ACGGTCAACAACTAGTGCGCATACGCTGTCTCTAGAATTGTTGCTTGTAGAACCTGCTGG
TCAAGTCAGGAAGATGTTGGTCCACCGGCAGTGCACGCCAGTGCGGGTCCAGCCGCCGAA
GCACCTGGCACGGCGAGCTGTGCTGCTCCCTGCACGTCGTGGTGTCGCGGTGGCGCGTGC
AGAAGCTGCTCCAGGGCTAGTGGCGACGGAGGCGCCCCCGCACGCCATCACGCTGACGCC
AGAGGCCCTCGTGCAGCTGCGCAAGCTGCGCGCAGACTTTAAGGAACAGAGCGAGGCCAT
GCTGCTGCGCGTGGGCGTGAAGCAAGGCGGCTGCTCGGGTATGTCGTACGTGATGGACTT
CGAGTCTCAGGACAAGGTGACGGACGACGACCACGTCATCTCGTACGATGACGGCTTCCG
CCTGGTGGTGGACCCCAAGTCGCTGCTGTACCTGTTCGGCATGCAGCTGGGCTACTCCAC
GGCGCTCATCGGCGGCGGCTTCCAGTTCCAGAACCCCAACGCCACCGACTCGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000922A_C01 KCC000922A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_172520.1| expressed protein [Arabidopsis thaliana]             128  4e-29
sp|Q9XIK3|Y105_ARATH Hypothetical protein At1g10500 gi|25310105|...   122  3e-27
ref|NP_486425.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...   121  7e-27
ref|ZP_00111918.1| COG0316: Uncharacterized conserved protein [N...   117  1e-25
ref|NP_440066.1| hypothetical protein [Synechocystis sp. PCC 680...   114  6e-25

>ref|NP_172520.1| expressed protein [Arabidopsis thaliana]
          Length = 180

 Score =  128 bits (322), Expect = 4e-29
 Identities = 68/127 (53%), Positives = 83/127 (64%)
 Frame = +2

Query: 155 RRGVAVARAEAAPGLVATEAPPHAITLTPEALVQLRKLRADFKEQSEAMLLRVGVKQGGC 334
           RR     R+ + P   A E    AI+L+  AL  L K+R+   E+ E + LR+GVKQGGC
Sbjct: 48  RRNRLSVRSASVPAAPAMEGLKPAISLSENALKHLSKMRS---ERGEDLCLRIGVKQGGC 104

Query: 335 SGMSYVMDFESQDKVTDDDHVISYDDGFRLVVDPKSLLYLFGMQLGYSTALIGGGFQFQN 514
           SGMSY MDFE++     DD  I Y  GF +V DPKS+L+LFGMQL YS ALIGGGF F N
Sbjct: 105 SGMSYTMDFENRANARPDDSTIEYQ-GFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSN 163

Query: 515 PNATDSC 535
           PNAT +C
Sbjct: 164 PNATQTC 170

>sp|Q9XIK3|Y105_ARATH Hypothetical protein At1g10500 gi|25310105|pir||F86238 protein
           T10O24.11 [imported] - Arabidopsis thaliana
           gi|5091542|gb|AAD39571.1|AC007067_11 T10O24.11
           [Arabidopsis thaliana]
          Length = 116

 Score =  122 bits (306), Expect = 3e-27
 Identities = 62/104 (59%), Positives = 75/104 (71%)
 Frame = +2

Query: 224 AITLTPEALVQLRKLRADFKEQSEAMLLRVGVKQGGCSGMSYVMDFESQDKVTDDDHVIS 403
           AI+L+  AL  L K+R+   E+ E + LR+GVKQGGCSGMSY MDFE++     DD  I 
Sbjct: 7   AISLSENALKHLSKMRS---ERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIE 63

Query: 404 YDDGFRLVVDPKSLLYLFGMQLGYSTALIGGGFQFQNPNATDSC 535
           Y  GF +V DPKS+L+LFGMQL YS ALIGGGF F NPNAT +C
Sbjct: 64  YQ-GFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTC 106

>ref|NP_486425.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25310158|pir||AB2104
           hypothetical protein alr2385 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17131477|dbj|BAB74084.1|
           ORF_ID:alr2385~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 118

 Score =  121 bits (303), Expect = 7e-27
 Identities = 59/111 (53%), Positives = 81/111 (72%)
 Frame = +2

Query: 203 ATEAPPHAITLTPEALVQLRKLRADFKEQSEAMLLRVGVKQGGCSGMSYVMDFESQDKVT 382
           AT++    I L+  AL Q++ L+   ++Q + + LRVGV+QGGCSGMSY+MDFE + ++T
Sbjct: 4   ATQSQQSGILLSEAALRQVKSLQ---EKQGQDLCLRVGVRQGGCSGMSYMMDFEQESQIT 60

Query: 383 DDDHVISYDDGFRLVVDPKSLLYLFGMQLGYSTALIGGGFQFQNPNATDSC 535
             D V  YD GF++V D KS+LYL+G+ L YS A+IGGGFQF NPNAT +C
Sbjct: 61  PQDEVFDYD-GFKIVCDRKSILYLYGLMLDYSDAMIGGGFQFTNPNATQTC 110

>ref|ZP_00111918.1| COG0316: Uncharacterized conserved protein [Nostoc punctiforme]
          Length = 118

 Score =  117 bits (292), Expect = 1e-25
 Identities = 60/111 (54%), Positives = 75/111 (67%)
 Frame = +2

Query: 203 ATEAPPHAITLTPEALVQLRKLRADFKEQSEAMLLRVGVKQGGCSGMSYVMDFESQDKVT 382
           A ++    I L+  AL Q++ LR    +Q     LRVGV+QGGCSGMSY+MDFE   K+T
Sbjct: 4   AIQSQQRGILLSEAALHQVKSLR---DKQGTDFCLRVGVRQGGCSGMSYMMDFEDTSKIT 60

Query: 383 DDDHVISYDDGFRLVVDPKSLLYLFGMQLGYSTALIGGGFQFQNPNATDSC 535
             D V  YD GF++V D KSLLYL+G+ L YS A+IGGGFQF NPNA  +C
Sbjct: 61  PQDEVFDYD-GFKIVSDRKSLLYLYGLMLDYSDAMIGGGFQFTNPNANQTC 110

>ref|NP_440066.1| hypothetical protein [Synechocystis sp. PCC 6803]
           gi|2495209|sp|P72731|YE17_SYNY3 Hypothetical protein
           slr1417 gi|7446872|pir||S74594 hypothetical protein
           slr1417 - Synechocystis sp. (strain PCC 6803)
           gi|1651819|dbj|BAA16746.1| ORF_ID:slr1417~hypothetical
           protein [Synechocystis sp. PCC 6803]
          Length = 118

 Score =  114 bits (286), Expect = 6e-25
 Identities = 58/111 (52%), Positives = 76/111 (68%)
 Frame = +2

Query: 203 ATEAPPHAITLTPEALVQLRKLRADFKEQSEAMLLRVGVKQGGCSGMSYVMDFESQDKVT 382
           AT      I L+  AL  L  L+   ++Q + + LRVGV+QGGCSGMSY+MDFE  ++ T
Sbjct: 4   ATATQAKGIQLSDAALKHLLALK---EQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRAT 60

Query: 383 DDDHVISYDDGFRLVVDPKSLLYLFGMQLGYSTALIGGGFQFQNPNATDSC 535
           + D V  Y+ GF+++ D KSLLYL+G+ L YS ALIGGGFQF NPNA  +C
Sbjct: 61  EHDEVFDYE-GFQIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNANQTC 110



EST assemble image


clone accession position
1 CM003d02_r AV386551 1 468
2 HC022a03_r AV633541 1 481
3 HC058g05_r AV636381 13 535




Chlamydomonas reinhardtii
Kazusa DNA Research Institute