KCC000920A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000920A_C01 KCC000920A_c01
ctgcGGCATACATACTTGGGCGTGGTTGCCTACTAGCAATAGGCGACGCGGGAAGGGCGC
GCCAAGAGACTCGCATCGGGGAACTTTTCCGAGACAAGGACTTGTTCTGTGAGCCATGGC
CACTCTCCTGAGGGCGCAGGGCCTGCGCGCCGGCCTGCCCACCCAGCAGCGCAAGGTTGC
GCCCGCACCTGCGGCATTCCGCGCTTCCGCGACCGCGCCTGCTCTTCGCAGCGTGGTTGG
CATGTCCGCGCTGCCTCTGCACAACCGTGTTGCACCAGAAGACCACTACTGTTGGTCGGC
GCTCGCTGAATGTGGTCGCTCAGGCCGCATCGTCCCCTGCCCCGGCTCCCGCGAAGCCCG
CCTTTAAGTGGGGTGCCAACATGAAGGACCTGGCCATCTGCGTGGGCGTTGCTACTGCCC
TGTGGTTCATCCCGCCCCCCGCGGGCGTGACGGCCAAGGCCTGGCACCTGCTGGCGGTCT
TCATCGGCACTATCGTGGGCATCATCACTACGCCGCTGCCGCTGGGCGCGGTCGCCATCA
TCGGCCTGGGCGCTGCCATGATCACGAAGGTGCTGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000920A_C01 KCC000920A_c01
         (577 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_568283.2| oxoglutarate/malate translocator, putative [Ara...    99  3e-20
sp|Q41364|SOT1_SPIOL 2-oxoglutarate/malate translocator, chlorop...    94  2e-18
gb|AAM89396.1| glutamate/malate translocator [Spinacia oleracea]       78  1e-13
gb|AAM89394.1| glutamate/malate translocator [Sorghum bicolor]         75  8e-13
ref|NP_388638.1| similar to 2-oxoglutarate/malate translocator [...    73  2e-12

>ref|NP_568283.2| oxoglutarate/malate translocator, putative [Arabidopsis thaliana]
           gi|11277059|pir||T49900 2-oxoglutarate/malate
           translocator-like protein T24H18.30 [similarity] -
           Arabidopsis thaliana gi|7630042|emb|CAB88250.1|
           2-oxoglutarate/malate translocator precursor-like
           protein [Arabidopsis thaliana]
          Length = 557

 Score = 99.4 bits (246), Expect = 3e-20
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
 Frame = +3

Query: 141 ACAPACPPSSARL---RPHLRHSALPRPRLLFAAWLACPRCLCTTVLHQKTTTVGRRSLN 311
           +C+ A P  S  L   RP      L +P     +  +  +      L ++++T+ + S +
Sbjct: 9   SCSLAFPLKSRSLSLPRPPSSSLNLTKPLRSLDSRFSLLKSPLPVSLRRRSSTLVKAS-S 67

Query: 312 VVAQAASSPAPAPAKPAFKW-GANMKDLAICVGVATALWFIPPPAGVTAKAWHLLAVFIG 488
            VA A+SSP P        W GA +K L   +     LWF+P P GVT  AW LLA+F+ 
Sbjct: 68  TVASASSSPTPPLVPAPVPWQGAAIKPLLASIATGLILWFVPVPEGVTRNAWQLLAIFLA 127

Query: 489 TIVGIITTPLPLGAVAIIGLGAAMITKVL 575
           TIVGIIT PLPLGAVA++GLGA+++TK L
Sbjct: 128 TIVGIITQPLPLGAVALMGLGASVLTKTL 156

>sp|Q41364|SOT1_SPIOL 2-oxoglutarate/malate translocator, chloroplast precursor
           gi|595681|gb|AAA68148.1| 2-oxoglutarate/malate
           translocator
          Length = 569

 Score = 93.6 bits (231), Expect = 2e-18
 Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
 Frame = +3

Query: 183 PHLRHSALPRPRLLFAAWLACPRCLCTTVLHQKTTTVGRRSLNVVAQAASSPAPAPAKPA 362
           P LR +A   P L    +L+ P  L     H+          N     A  P+PAP    
Sbjct: 37  PSLRSNASKSPSLSHKHFLSPPSLLLP---HKLKPISASSPTNPPPPPAPVPSPAPVSAP 93

Query: 363 FK---W-GANMKDLAICVGVATALWFIPPPAGVTAKAWHLLAVFIGTIVGIITTPLPLGA 530
            +   W GA++K L   +     +WFIP P GV+  AW LLA+F+ TIVGIIT PLPLGA
Sbjct: 94  AQVQPWQGASIKPLLASILTGVIIWFIPTPEGVSRNAWQLLAIFLSTIVGIITQPLPLGA 153

Query: 531 VAIIGLGAAMITKVL 575
           VA++GLGA+++TK L
Sbjct: 154 VALMGLGASVLTKTL 168

>gb|AAM89396.1| glutamate/malate translocator [Spinacia oleracea]
          Length = 564

 Score = 77.8 bits (190), Expect = 1e-13
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
 Frame = +3

Query: 180 RPHLRHS--ALPRPRLLFAAWLACPRCLCTTVLHQKTTTVGRRSLNVVAQAASSPAPAPA 353
           RPHL  S  + P+P L F++           +L  K        LN  A ++SSPA    
Sbjct: 36  RPHLSLSLSSTPKPTLTFSSHSHSHSLSSKPLLALKP-------LNATASSSSSPATTSP 88

Query: 354 KPAFKWGANMKDLAICVGVATALWF-IPPPAGVTAKAWHLLAVFIGTIVGIITTPLPLGA 530
            P  K GA +  L + V V   L F +P PA +T +AW LLA+F+ T+ G++ +PLP+GA
Sbjct: 89  PPT-KSGAKLIPLILSVSVGLLLRFAVPKPAELTPQAWQLLAIFLSTVAGLVLSPLPVGA 147

Query: 531 VAIIGLGAAMITKVL 575
            A +G+ A+++TK L
Sbjct: 148 WAFLGVTASVVTKTL 162

>gb|AAM89394.1| glutamate/malate translocator [Sorghum bicolor]
          Length = 563

 Score = 74.7 bits (182), Expect = 8e-13
 Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
 Frame = +3

Query: 162 PSSARLRP-HLRHSALPRPRLLFAAWLACPRC--LCTTVLHQKTTTVGRRSLNVVAQAAS 332
           P+SA LR  HL    LPR     + + +      LC T  H     +   +        +
Sbjct: 19  PASAHLRRRHLYLHRLPRTSSSSSLFFSPSHHHRLCPTPRHDLLQPLAAAASGAAKLVPA 78

Query: 333 SPAPAPAKPAFK-WGANMKDLAICVGVATALWFIPP-PAGVTAKAWHLLAVFIGTIVGII 506
           SPAPA + P  K  GA +  L I + V  A+ F+ P PA V+ +AW LL++F+ TI G++
Sbjct: 79  SPAPADSSPEPKPSGAKLVPLVISLAVGLAVRFLAPRPAEVSPRAWQLLSIFLSTIAGLV 138

Query: 507 TTPLPLGAVAIIGLGAAMITKVL 575
             PLP+GA A +GL AA+ T  L
Sbjct: 139 LGPLPVGAWAFLGLTAAVATHTL 161

>ref|NP_388638.1| similar to 2-oxoglutarate/malate translocator [Bacillus subtilis]
           gi|7428756|pir||F69811 2-oxoglutarate/malate
           translocator homolog yflS - Bacillus subtilis
           gi|2443241|dbj|BAA22312.1| YflS [Bacillus subtilis]
           gi|2633081|emb|CAB12586.1| yflS [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 478

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +3

Query: 345 APAKPAFKWGA-NMKDLAICVGVATALWFIPPPAGVTAKAWHLLAVFIGTIVGIITTPLP 521
           A  K A K  A  +  L I V V   +WFIP P+G+  KAWHL A+F+ TI+G I+ PLP
Sbjct: 2   ASEKDAGKQSAVKLVPLLITVAVGLIIWFIPAPSGLEPKAWHLFAIFVATIIGFISKPLP 61

Query: 522 LGAVAIIGLGAAMITKVL 575
           +GA+AI  L    +T  L
Sbjct: 62  MGAIAIFALAVTALTGTL 79



EST assemble image


clone accession position
1 HC015d04_r AV632994 1 515
2 LCL050e03_r AV629021 5 281
3 CM012c07_r AV387134 11 488
4 HC035c06_r AV634586 11 492
5 MXL008a03_r BP093408 15 495
6 CM003b09_r AV386589 15 580
7 HCL005c02_r AV639801 36 489
8 HC020d09_r AV633403 94 427




Chlamydomonas reinhardtii
Kazusa DNA Research Institute