>KCC000911A_C01 KCC000911A_c01
CCCCGACCTATACCCTTCACTTCACCAACTCTTCAAAATGGCCTCTCTGTGCATGCGCTC
GTCGCTGGCGCCCAAGGTTGCCTCGCGCAGCTCGGCTTTCCTGGCGTCGCCGGTGGCCCC
TGGTGCGCTCCGTCGCGCCCGTCAAGGCCGCTCCCACCACCGTGGTTGTGGAGGCCAAGC
TGAAGACCCGCAAGTCGGCTGCTAAGCGCTTCAAGGTCACTGGCTCGGGCAAGGTGACTG
CCCGCCACGCCGGCAAGCAGCACTTCAACGAGAAGATGACCCGCGACCACATCCGCGACT
CGTCCAAGATGTTCGTGCTCAGCCCGGCCAACATCTACAACGCCACCAAGTGCCTGCCCC
AACAGCGGCGTTGGCGGCAAGTAAATGCCTAAACCCGCAGCAGCTAGGAGCGAGGAGCCT
GGGCCCATGCATGGGCGTGCGAAGCGCCAGCCGCAGAGCTGAATGCAGCTTTGCAAGCAG
CGTCGACAGGCAAACGTGGCAGGCGCATAACGTCCTGGATAACAGGCCCGAAGGCAGCCT
GACCCATATCGCACGTTACCATCGGAGG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000911A_C01 KCC000911A_c01
         (568 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP79180.1| ribosomal protein rpL35 [Bigelowiella natans]           59  6e-08
emb|CAD24038.1| putative plastid ribosomal protein L35 [Zea mays]      57  2e-07
emb|CAD24032.1| putative plastid ribosomal protein L35 [Zea mays...    57  2e-07
ref|NP_360571.1| 50S ribosomal protein L35 [Rickettsia conorii] ...    55  7e-07
sp|Q92H38|RL35_RICCN 50S ribosomal protein L35                         55  7e-07

>gb|AAP79180.1| ribosomal protein rpL35 [Bigelowiella natans]
          Length = 123

 Score = 58.5 bits (140), Expect = 6e-08
 Identities = 30/59 (50%), Positives = 37/59 (61%)
 Frame = +3

Query: 183 KTRKSAAKRFKVTGSGKVTARHAGKQHFNEKMTRDHIRDSSKMFVLSPANIYNATKCLP 359
           KT K+AAKRFKVT  GKV ++ AGKQH N KM+R +        V+  A+I N   CLP
Sbjct: 59  KTGKAAAKRFKVTSGGKVLSKQAGKQHLNTKMSRKNKMRLGDKRVIEKADISNVQGCLP 117

>emb|CAD24038.1| putative plastid ribosomal protein L35 [Zea mays]
          Length = 120

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 36/96 (37%), Positives = 50/96 (51%), Gaps = 8/96 (8%)
 Frame = +3

Query: 123 VRSVAPVKAAPTTVVVEA--------KLKTRKSAAKRFKVTGSGKVTARHAGKQHFNEKM 278
           V S  P K A +T  +E         K+KT K++AKRF+VTG GK+  R AGKQH   K 
Sbjct: 25  VASPLPRKPATSTTSLEVVAAGKKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKK 84

Query: 279 TRDHIRDSSKMFVLSPANIYNATKCLPQQRRWRQVN 386
                +  SKM  ++ ++  N T  LP  +  R+ N
Sbjct: 85  NTKRKKRLSKMVQVNKSDYDNVTGALPYLKVNRKAN 120

>emb|CAD24032.1| putative plastid ribosomal protein L35 [Zea mays]
           gi|28411214|emb|CAD24037.1| putative plastid ribosomal
           protein L35 [Zea mays]
          Length = 143

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 36/96 (37%), Positives = 50/96 (51%), Gaps = 8/96 (8%)
 Frame = +3

Query: 123 VRSVAPVKAAPTTVVVEA--------KLKTRKSAAKRFKVTGSGKVTARHAGKQHFNEKM 278
           V S  P K A +T  +E         K+KT K++AKRF+VTG GK+  R AGKQH   K 
Sbjct: 48  VASPLPRKPATSTTSLEVVAAGKKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKK 107

Query: 279 TRDHIRDSSKMFVLSPANIYNATKCLPQQRRWRQVN 386
                +  SKM  ++ ++  N T  LP  +  R+ N
Sbjct: 108 NTKRKKRLSKMVQVNKSDYDNVTGALPYLKVNRKAN 143

>ref|NP_360571.1| 50S ribosomal protein L35 [Rickettsia conorii]
           gi|25295681|pir||F97816 50S ribosomal protein L35
           [imported] - Rickettsia conorii  (strain Malish 7)
           gi|15620044|gb|AAL03472.1| 50S ribosomal protein L35
           [Rickettsia conorii]
          Length = 89

 Score = 55.1 bits (131), Expect = 7e-07
 Identities = 27/58 (46%), Positives = 36/58 (61%)
 Frame = +3

Query: 177 KLKTRKSAAKRFKVTGSGKVTARHAGKQHFNEKMTRDHIRDSSKMFVLSPANIYNATK 350
           KLKT+ +  KRFK+T SGKV A  AGK+HF  + T+  IR+     +L P + YN  K
Sbjct: 24  KLKTKSAVKKRFKLTASGKVIASQAGKKHFMRRRTKAQIRNLRGTTILCPQDRYNIKK 81

>sp|Q92H38|RL35_RICCN 50S ribosomal protein L35
          Length = 68

 Score = 55.1 bits (131), Expect = 7e-07
 Identities = 27/58 (46%), Positives = 36/58 (61%)
 Frame = +3

Query: 177 KLKTRKSAAKRFKVTGSGKVTARHAGKQHFNEKMTRDHIRDSSKMFVLSPANIYNATK 350
           KLKT+ +  KRFK+T SGKV A  AGK+HF  + T+  IR+     +L P + YN  K
Sbjct: 3   KLKTKSAVKKRFKLTASGKVIASQAGKKHFMRRRTKAQIRNLRGTTILCPQDRYNIKK 60

EST assemble image

clone accession position 1 HC057f10_r AV636300 1 558 2 LC003g02_r AV619097 8 671 3 HC011b04_r AV632669 25 607 4 LC080e05_r AV624636 75 587 5 HC053c05_r AV635955 83 496 6 MX027b12_r BP087172 87 451 7 LC011c01_r AV619645 88 636 8 LC065c04_r AV623532 92 649 9 LC030g09_r AV621069 92 618 10 LC030f09_r AV621059 92 607 11 LCL100h08_r AV631859 95 629 12 HC087b12_r AV638505 97 566 13 HC099h12_r AV639485 98 529 14 LC022c12_r AV620450 98 683 15 CM051a08_r AV389848 99 661 16 MX039b11_r BP087616 101 591 17 HC004c01_r AV632122 101 649 18 CM002f04_r AV397821 105 670 19 CM033a02_r AV388388 105 643 20 CM027h10_r AV387610 105 703 21 CM051c09_r AV389836 105 663 22 HC055f04_r AV636137 108 573 23 LC016e11_r AV620031 108 601 24 HC077h10_r AV637818 108 629 25 HC005g08_r AV632249 108 647 26 LC055b01_r AV622821 110 684 27 LC004e03_r AV619153 110 671 28 HC045f02_r AV635377 110 657 29 MX043e05_r BP087782 110 559 30 LC079h01_r AV624591 110 558 31 LC066a08_r AV623594 110 579 32 LC058e11_r AV623073 110 624 33 HC035d04_r AV634594 110 608 34 HC072e12_r AV637392 110 540 35 LC067h01_r AV623727 110 671 36 LC100h01_r AV625994 111 505 37 MX104g06_r BP089099 111 628 38 LC067b05_r AV623675 111 621 39 CM022c02_r AV387881 111 726 40 MX104a11_r BP089036 111 636 41 HC054d04_r AV636038 111 473 42 MX103c02_r BP088965 111 412 43 CM100c10_r AV392843 112 275 44 MX003c04_r BP086169 112 488 45 HC099d08_r AV639441 112 590 46 HC017e07_r AV633164 112 630 47 HC028c07_r AV634025 112 624 48 HC032a02_r AV634328 112 610 49 HC088a12_r AV638572 112 614 50 CM049e12_r AV389614 112 382 51 HC060g04_r AV636535 112 633 52 LC040b01_r AV621718 113 671 53 MX041f04_r BP087691 115 510 54 MX007e03_r BP086374 116 311 55 MX002h10_r BP086156 119 519 56 HCL079a02_r AV643949 127 671 57 LC028c10_r AV620898 163 684 58 MXL010a03_r BP093549 169 550 59 MX010f08_r BP086522 263 507

---