KCC000907A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000907A_C01 KCC000907A_c01
gcaccagCTTGCAGTTTCATTTAAAGGCGCCCGAAGCTTGCTGAGGTCACAAAGGCTCTC
CGACGTAATCCAAAATGGCTCTTACGAAGGTCTCGTTTGGCGCTGCCGGCATCCCTGGCT
ATGAGATCGGCGACAAGAGCCTACCTGCAGTGATTTTGATTCAGGAGTGGTGGGGCGTGA
CCGAAATCATTAAGTACCAGGCCGAGCAGCTAAGCAAGCAGGGCTTCCGCTGCCTCATCC
CCGACCTTTACAAGGGCAAGATCGGCGTGGACGCCGAGGAGGCCTCACACCTGATGAACA
ACCTGGACTTTAAGAACGCGGTGGACGAGCTGAAGCAGGCCGTGGACTACCTCCAGGCCA
CCGGCTCGCCCAAGGTGGGCGCCACGGGCTTCTGCATGGGCGGCGCGCTCGCCTTCTGCG
CCGCGCAGCACGCGGGTGTGGCCGCGGCCGCGCCCTTCTACGGCACCCCCAACCCGGCCA
TCTGCCAGGTGGAGAAGATCACCGTGCCGGTGGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000907A_C01 KCC000907A_c01
         (515 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sat...   125  2e-28
gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsi...   122  3e-27
ref|NP_180811.1| carboxymethylenebutenolidase -related [Arabidop...   120  8e-27
ref|ZP_00033473.1| COG0412: Dienelactone hydrolase and related e...   103  2e-21
ref|NP_522867.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solan...   100  1e-20

>dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sativa (japonica
           cultivar-group)]
          Length = 281

 Score =  125 bits (315), Expect = 2e-28
 Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
 Frame = +3

Query: 120 YEIGDKSLPAVILIQEWWGVTEIIKYQAEQLSK--QGFRCLIPDLYKGKIGVDAEEASHL 293
           Y +G ++ P ++++QEWWGV   IK  A  +S+  +G+R LIPDLY+GK+ +D  EA HL
Sbjct: 61  YVVGKENAPGIVVLQEWWGVDYEIKNHAVHISQIGEGYRALIPDLYRGKVALDVAEAQHL 120

Query: 294 MNNLDFKNAVDELKQAVDYLQATGSPKVGATGFCMGGALAFCAAQHA-GVAAAAPFYGTP 470
           M  LD+  AV +++ +V +L+A GSPKVG TG+CMGGAL+  +      V A   FYGTP
Sbjct: 121 MEGLDWPGAVKDIQASVKWLKANGSPKVGVTGYCMGGALSIASGVSVPEVDAVVAFYGTP 180

Query: 471 NPAICQVEKITVPVE 515
              +    K   P++
Sbjct: 181 PSELADASKAQAPIQ 195

>gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsis thaliana]
          Length = 239

 Score =  122 bits (306), Expect = 3e-27
 Identities = 59/135 (43%), Positives = 88/135 (64%), Gaps = 3/135 (2%)
 Frame = +3

Query: 120 YEIGDKSLPAVILIQEWWGVTEIIKYQAEQLSK--QGFRCLIPDLYKGKIGVDAEEASHL 293
           Y +G    P +++IQEWWGV   IK  A ++S+   GF+ LIPDLY+GK+G+D  EA HL
Sbjct: 21  YVVGKDDAPGIVVIQEWWGVDFEIKNHAIKISQLEPGFKALIPDLYRGKVGLDTAEAQHL 80

Query: 294 MNNLDFKNAVDELKQAVDYLQATGSPKVGATGFCMGGALAFCAAQHA-GVAAAAPFYGTP 470
           M+ LD+  A+ +++ +V++L++ GS KVGATG CMGGALA  ++     V A   FYGTP
Sbjct: 81  MDGLDWPGAIKDIRASVNWLKSNGSKKVGATGMCMGGALAIASSVLVPEVDAVVGFYGTP 140

Query: 471 NPAICQVEKITVPVE 515
           +  +    +   P++
Sbjct: 141 SSELADPAQAKAPIQ 155

>ref|NP_180811.1| carboxymethylenebutenolidase -related [Arabidopsis thaliana]
           gi|7435073|pir||T02551 probable
           carboxymethylenebutenolidase [imported] - Arabidopsis
           thaliana gi|3298540|gb|AAC25934.1| putative
           carboxymethylenebutenolidase [Arabidopsis thaliana]
           gi|30102612|gb|AAP21224.1| At2g32520 [Arabidopsis
           thaliana]
          Length = 239

 Score =  120 bits (302), Expect = 8e-27
 Identities = 58/135 (42%), Positives = 87/135 (63%), Gaps = 3/135 (2%)
 Frame = +3

Query: 120 YEIGDKSLPAVILIQEWWGVTEIIKYQAEQLSK--QGFRCLIPDLYKGKIGVDAEEASHL 293
           Y +G    P +++IQEWWGV   IK  A ++S+   GF+ LIPDLY+GK+G+D  EA HL
Sbjct: 21  YVVGKDDAPGIVVIQEWWGVDFEIKNHAIKISQLEPGFKALIPDLYRGKVGLDTAEAQHL 80

Query: 294 MNNLDFKNAVDELKQAVDYLQATGSPKVGATGFCMGGALAFCAAQHA-GVAAAAPFYGTP 470
           M+ LD+  A+ +++ +V++L++ GS KVG TG CMGGALA  ++     V A   FYGTP
Sbjct: 81  MDGLDWPGAIKDIRASVNWLKSNGSKKVGVTGMCMGGALAIASSVLVPEVDAVVGFYGTP 140

Query: 471 NPAICQVEKITVPVE 515
           +  +    +   P++
Sbjct: 141 SSELADPAQAKAPIQ 155

>ref|ZP_00033473.1| COG0412: Dienelactone hydrolase and related enzymes [Burkholderia
           fungorum]
          Length = 235

 Score =  103 bits (256), Expect = 2e-21
 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
 Frame = +3

Query: 144 PAVILIQEWWGVTEIIKYQAEQLSKQGFRCLIPDLYKGKIGVDAEEASHLMNNLDFKN-A 320
           P +++IQEWWGV E I+  A++L++ G+  L+PDL++GK  V+  EA HL++ LDF + A
Sbjct: 33  PGIVVIQEWWGVNEQIRGVADRLAQAGYLALVPDLFRGKTTVEEAEAHHLLDGLDFGDAA 92

Query: 321 VDELKQAVDYLQATGSPKVGATGFCMGGALAFCAAQHA-GVAAAAPFYGTPNPAICQVEK 497
             +++ AV YL+   + KVG TGFCMGGAL   A  +   V+A   +YG P        K
Sbjct: 93  TQDVRGAVQYLKQQ-TAKVGVTGFCMGGALTLLALCNVPEVSAGVAWYGFPPLEYIDASK 151

Query: 498 ITVPV 512
           I VPV
Sbjct: 152 IKVPV 156

>ref|NP_522867.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
           gi|17549558|ref|NP_522898.1| PUTATIVE TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
           gi|17431781|emb|CAD18459.1| PUTATIVE TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
           gi|17431812|emb|CAD18490.1| PUTATIVE TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 238

 Score =  100 bits (249), Expect = 1e-20
 Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
 Frame = +3

Query: 144 PAVILIQEWWGVTEIIKYQAEQLSKQGFRCLIPDLYKGKIGVDAEEASHLMNNLDFKNAV 323
           P V++IQEWWG+ + I+  A++L+  G+  L+PDLY+G   V+ EEA HLM NL+F +A 
Sbjct: 33  PGVVVIQEWWGLNDQIRGVADRLAAAGYVALVPDLYRGSATVEEEEAHHLMTNLNFGDAA 92

Query: 324 -DELKQAVDYLQATGSPKVGATGFCMGGALAFCAAQHAGVAAA-APFYGTPNPAICQVEK 497
             +++ AV YL+     +VG TG+CMGGAL   A  +   AAA   +YG P        +
Sbjct: 93  SQDIRGAVQYLKQR-CERVGVTGYCMGGALTLLALGNVPEAAAGVVWYGFPPLEYIDASR 151

Query: 498 ITVPVE 515
           I VPV+
Sbjct: 152 IKVPVQ 157



EST assemble image


clone accession position
1 CM002e03_r AV397832 1 515
2 MX210f06_r BP089613 8 306




Chlamydomonas reinhardtii
Kazusa DNA Research Institute