KCC000905A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000905A_C01 KCC000905A_c01
TGGCACCGGAGTTTGATCAGCTTGCACTTACCCTTTCCCCAAAATGGCCCTTCGCTCCGT
GGCTATGCGCGGTCAGGCGCGCCCCAGCGTGTCCGCCGCGCGGCGCTCGGCTGTGTCGGC
TCACCGGGCCGTCAACGTTGTCGCCAGCTCCGTCGCTGACCTGAACAAGAAGCACGGCAT
TCCCGGCAGCGTGGAGTTCAAGGAGGGCAAGAGCGGCTCGCCGGTTGTGGTGTTGAAGCA
CGCCTGCGGTGCCTCCGCCGAGATGTACCTGTTCGGCGCCTGCGTGACCAGCTGGAAGCA
GCCCAGCGGTGACGAGGTGCTGTACGTGCGCCCCGACGCCGTGTTCGACAAGTCCAAGCC
CATCAGCGGTGGCGTGCCGCACTGCTTCCCCCAGTTCGGCCCCGGCGCTATGCAGCAGCA
CGGCTTCGCGCGCAACCTGGACTGGGCTGTGTCCACCACCTCGGCCGACCCCAACCCCGA
CGAGAAGGACCCCTCGGTGGAGGTGGTGCTGACTGAGAGCGACTACACTCTGAAGATGTG
GCCCCACAAGTTCAAGGCCGTGTACACCGTGTCTCTGCACGGCGAGCAGCTGAACCTCCA
ACTGCGCGTCATCAACACCGATGACAAGCCCTTCGACTTCACGGCCGCGCTGCACACCTA
CATCGAGGTGCTGGAGATCGCGAAGGCCAAGGTCACCGGCCTCAAGGGCCTGACCTACCT
GTGCAAGGCCGTGGACCCCAAGGTGCCTGAGACCAAGAAGGAGGACCGCGACGCGGTCAC
CTTCACCGGCTACACCGACTCGGTGTACCTGAACTCGCCCGCGCACGTGGAGCTGGAGGT
GGGCACCGGCGCCGCCGTGGCGCTGGACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000905A_C01 KCC000905A_c01
         (869 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF34174.1|AF195243_1 apospory-associated protein C; APOC [Ch...   543  e-153
ref|NP_201454.1| aldose 1-epimerase family [Arabidopsis thaliana...   221  9e-57
ref|NP_200543.1| aldose 1-epimerase family [Arabidopsis thaliana...   151  1e-35
gb|AAL87174.1|AF480497_2 putative apospory-associated protein C ...   150  3e-35
sp|Q40784|AAPC_PENCL POSSIBLE APOSPORY-ASSOCIATED PROTEIN C gi|5...   149  8e-35

>gb|AAF34174.1|AF195243_1 apospory-associated protein C; APOC [Chlamydomonas reinhardtii]
          Length = 338

 Score =  543 bits (1400), Expect = e-153
 Identities = 268/268 (100%), Positives = 268/268 (100%)
 Frame = +2

Query: 65  MRGQARPSVSAARRSAVSAHRAVNVVASSVADLNKKHGIPGSVEFKEGKSGSPVVVLKHA 244
           MRGQARPSVSAARRSAVSAHRAVNVVASSVADLNKKHGIPGSVEFKEGKSGSPVVVLKHA
Sbjct: 1   MRGQARPSVSAARRSAVSAHRAVNVVASSVADLNKKHGIPGSVEFKEGKSGSPVVVLKHA 60

Query: 245 CGASAEMYLFGACVTSWKQPSGDEVLYVRPDAVFDKSKPISGGVPHCFPQFGPGAMQQHG 424
           CGASAEMYLFGACVTSWKQPSGDEVLYVRPDAVFDKSKPISGGVPHCFPQFGPGAMQQHG
Sbjct: 61  CGASAEMYLFGACVTSWKQPSGDEVLYVRPDAVFDKSKPISGGVPHCFPQFGPGAMQQHG 120

Query: 425 FARNLDWAVSTTSADPNPDEKDPSVEVVLTESDYTLKMWPHKFKAVYTVSLHGEQLNLQL 604
           FARNLDWAVSTTSADPNPDEKDPSVEVVLTESDYTLKMWPHKFKAVYTVSLHGEQLNLQL
Sbjct: 121 FARNLDWAVSTTSADPNPDEKDPSVEVVLTESDYTLKMWPHKFKAVYTVSLHGEQLNLQL 180

Query: 605 RVINTDDKPFDFTAALHTYIEVLEIAKAKVTGLKGLTYLCKAVDPKVPETKKEDRDAVTF 784
           RVINTDDKPFDFTAALHTYIEVLEIAKAKVTGLKGLTYLCKAVDPKVPETKKEDRDAVTF
Sbjct: 181 RVINTDDKPFDFTAALHTYIEVLEIAKAKVTGLKGLTYLCKAVDPKVPETKKEDRDAVTF 240

Query: 785 TGYTDSVYLNSPAHVELEVGTGAAVALD 868
           TGYTDSVYLNSPAHVELEVGTGAAVALD
Sbjct: 241 TGYTDSVYLNSPAHVELEVGTGAAVALD 268

>ref|NP_201454.1| aldose 1-epimerase family [Arabidopsis thaliana]
           gi|10177534|dbj|BAB10929.1| apospory-associated protein
           C-like [Arabidopsis thaliana] gi|21539433|gb|AAM53269.1|
           apospory-associated protein C-like protein [Arabidopsis
           thaliana] gi|23197658|gb|AAN15356.1| apospory-associated
           protein C-like protein [Arabidopsis thaliana]
          Length = 307

 Score =  221 bits (564), Expect = 9e-57
 Identities = 109/225 (48%), Positives = 146/225 (64%)
 Frame = +2

Query: 191 VEFKEGKSGSPVVVLKHACGASAEMYLFGACVTSWKQPSGDEVLYVRPDAVFDKSKPISG 370
           V   EG+   P +VL     + AE+YLFG C+TSWK  SG ++L+VRPDAVF+K KPISG
Sbjct: 36  VRVAEGEGNLPKLVLTSPQNSEAEIYLFGGCITSWKVASGKDLLFVRPDAVFNKIKPISG 95

Query: 371 GVPHCFPQFGPGAMQQHGFARNLDWAVSTTSADPNPDEKDPSVEVVLTESDYTLKMWPHK 550
           G+PHCFPQFGPG +QQHGF RN+DW+V     D    + + +V + L +  Y+  MW   
Sbjct: 96  GIPHCFPQFGPGLIQQHGFGRNMDWSV----VDSQNADDNAAVTLELKDGPYSRAMWDFA 151

Query: 551 FKAVYTVSLHGEQLNLQLRVINTDDKPFDFTAALHTYIEVLEIAKAKVTGLKGLTYLCKA 730
           F+A+Y V +  + L+ +L++ NTDDKPF F+ ALHTY      A A V GLKG   L K 
Sbjct: 152 FQALYKVIVGADSLSTELKITNTDDKPFSFSTALHTYFRA-SSAGASVRGLKGCKTLNKD 210

Query: 731 VDPKVPETKKEDRDAVTFTGYTDSVYLNSPAHVELEVGTGAAVAL 865
            DPK P   KEDRDAVTF G+ D+VYL++P  ++ + G G  + +
Sbjct: 211 PDPKNPIEGKEDRDAVTFPGFVDTVYLDAPNELQFDNGLGDKIII 255

>ref|NP_200543.1| aldose 1-epimerase family [Arabidopsis thaliana]
           gi|8777366|dbj|BAA96956.1| apospory-associated protein C
           [Arabidopsis thaliana] gi|20260440|gb|AAM13118.1|
           unknown protein [Arabidopsis thaliana]
           gi|28059286|gb|AAO30044.1| unknown protein [Arabidopsis
           thaliana]
          Length = 312

 Score =  151 bits (382), Expect = 1e-35
 Identities = 86/222 (38%), Positives = 128/222 (56%), Gaps = 8/222 (3%)
 Frame = +2

Query: 194 EFKEGKSGSPVVVLKHACGASAEMYLFGACVTSWKQPSGDEVLYVRPDAVFDKSKPISGG 373
           E  +G +G   +VL+ + G SAE+YL+G+ VTSWK  +G+E+L++   A+F   KPI GG
Sbjct: 9   ELAKGINGLDKIVLRESRGRSAEVYLYGSHVTSWKNENGEELLHLSSKAIFKPPKPIRGG 68

Query: 374 VPHCFPQFGP-GAMQQHGFARNLDWAVSTTSADPNP----DEKDPSVEVVLTESDYTLKM 538
           +P CFPQF   G ++ HGFARN  W V    A+P P          V+++L  ++  LK+
Sbjct: 69  IPLCFPQFSNFGTLESHGFARNRIWEV---EANPPPLPLNSCSSAFVDLILRPTEDDLKI 125

Query: 539 WPHKFKAVYTVSLHGE---QLNLQLRVINTDDKPFDFTAALHTYIEVLEIAKAKVTGLKG 709
           WP+ F+    ++L  E    L  ++R  N+D KPF FT A HTY  V +I++ +V GL+ 
Sbjct: 126 WPNNFEFRLRIALGTEGELTLTSRIRNTNSDGKPFTFTFAYHTYFSVSDISEVRVEGLET 185

Query: 710 LTYLCKAVDPKVPETKKEDRDAVTFTGYTDSVYLNSPAHVEL 835
           L YL    D    E   E  DA+TF    D +YL++P  + +
Sbjct: 186 LDYLDNLKD---RERFTEQGDAITFESEVDKIYLSTPTKIAI 224

>gb|AAL87174.1|AF480497_2 putative apospory-associated protein C [Oryza sativa (japonica
           cultivar-group)] gi|32489384|emb|CAE04230.1|
           OSJNBa0011F23.3 [Oryza sativa (japonica cultivar-group)]
          Length = 344

 Score =  150 bits (378), Expect = 3e-35
 Identities = 87/222 (39%), Positives = 123/222 (55%), Gaps = 5/222 (2%)
 Frame = +2

Query: 185 GSVEFKEGKSGSPVVVLKHACGASAEMYLFGACVTSWKQPSGDEVLYVRPDAVFDKSKPI 364
           G V   +G +G   VVL+   G+SAE+YL+G  VTSWK   G+E+L+V   A+F   K I
Sbjct: 28  GPVVTCKGVNGLDKVVLREVRGSSAEVYLYGGHVTSWKDEHGEELLFVSNKAIFKPPKAI 87

Query: 365 SGGVPHCFPQFGP-GAMQQHGFARNLDWAVSTTSAD-PNPDEKDPSVEVVLTESDYTLKM 538
            GG+P CFPQF   G +  HGFARN  W+V       P P      V+++LT ++  LK+
Sbjct: 88  RGGIPICFPQFSNFGNLDPHGFARNRTWSVENDPPPFPVPTSNKAYVDLILTHTEEDLKI 147

Query: 539 WPHKFKAVYTVSL-HGEQLNLQLRVINT--DDKPFDFTAALHTYIEVLEIAKAKVTGLKG 709
           WPH ++    V+L  G  L L  R+ NT  D KPF FT A HTY  + +I++ +V GL+ 
Sbjct: 148 WPHSYEFRLRVALGPGGDLMLTSRIRNTNADGKPFSFTFAYHTYFSISDISEVRVEGLET 207

Query: 710 LTYLCKAVDPKVPETKKEDRDAVTFTGYTDSVYLNSPAHVEL 835
           L YL    +        E  DA+ F    D +YL +P+ + +
Sbjct: 208 LDYLDNLQE---RNRYTEQGDAIVFESELDRIYLGTPSKIAI 246

>sp|Q40784|AAPC_PENCL POSSIBLE APOSPORY-ASSOCIATED PROTEIN C gi|549984|gb|AAA80575.1|
           possible apospory-associated protein
          Length = 329

 Score =  149 bits (375), Expect = 8e-35
 Identities = 89/240 (37%), Positives = 132/240 (54%), Gaps = 9/240 (3%)
 Frame = +2

Query: 143 ASSVADLNKKHGIPGS-VEFKEGKSGSPVVVLKHACGASAEMYLFGACVTSWKQPSGDEV 319
           A + A  + K  +P    E  +  SG   VVL+ A    AE+YL+G  VTSWK  +G+E+
Sbjct: 7   AGAAASPSPKPQLPSPFAELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEEL 66

Query: 320 LYVRPDAVFDKSKPISGGVPHCFPQFGP-GAMQQHGFARNLDWAVSTTSADPNPDEKDPS 496
           L++   A+F   K I GG+P C PQFG  G ++QHGFARN  W++     DP P   +P+
Sbjct: 67  LFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDN---DPPPLPVNPA 123

Query: 497 ----VEVVLTESDYTLKMWPHKFKAVYTVSLHGE---QLNLQLRVINTDDKPFDFTAALH 655
               V+++L  ++  LK+WPH F+    V+L       L  ++R  NTD +PF +T A H
Sbjct: 124 IKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYH 183

Query: 656 TYIEVLEIAKAKVTGLKGLTYLCKAVDPKVPETKKEDRDAVTFTGYTDSVYLNSPAHVEL 835
           TY  V +I++ +V GL+ + YL      K  E   E  DA+ F    D VYL +P+ + +
Sbjct: 184 TYFFVSDISEVRVEGLETMDYLDNL---KAKERFTEQGDAIVFESEVDKVYLAAPSKIAI 240



EST assemble image


clone accession position
1 MX210a03_r BP089574 1 432
2 HC010g02_r AV632640 7 608
3 MX213e06_r BP089762 12 505
4 HC028g08_r AV634067 74 562
5 LC015h04_r AV619984 75 563
6 HC063c08_r AV636715 78 533
7 MXL099a01_r BP098777 81 458
8 LCL015h04_r AV626813 82 546
9 HC028d05_r AV634033 82 561
10 HC097b10_r AV639269 82 594
11 HC010b04_r AV632593 84 551
12 HC082g03_r AV638164 87 593
13 LC073b01_r AV624111 88 440
14 CM041e08_r AV389383 88 353
15 HC007h08_r AV632412 92 571
16 MX240c09_r BP091520 93 593
17 MX066f09_r BP088693 98 521
18 HC067b08_r AV636994 98 612
19 HC092a06_r AV638881 98 520
20 CM019h10_r AV387347 99 670
21 HC057e09_r AV636289 99 547
22 CM002d08_r AV397825 101 615
23 HC093h09_r AV639020 102 526
24 CM072e01_r AV391480 102 720
25 CM007f02_r AV386805 106 659
26 MX212c04_r BP089689 106 504
27 LC088c05_r AV625129 122 647
28 HC001h06_r AV631934 128 617
29 CM085b11_r AV392393 365 883
30 HC059f08_r AV636450 365 697
31 HC065b02_r AV636851 445 902
32 CM077a01_r AV391742 547 1035
33 CM037e01_r AV388833 683 977




Chlamydomonas reinhardtii
Kazusa DNA Research Institute