KCC000904A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000904A_C01 KCC000904A_c01
GTAGTGTCCATAGTGTCGTCTGTACACTTTAAGTCTCCTCTCTTTGCTTGATTTGCCTTC
CGACACGAGGATGCTGCTCGCGAACCGTGTTAACGCCGGTGCCGCCCGCCGTGTGAGCGG
GCGGGCCGCTGCTCCCATCGCGGTGCGTGCGGGCCGTCGCTCTCTTGTGTGCGAGGCGCG
CAAGGTTGCGCTGCTCGGCGCTGCCGGTGGCATTGGCCAGCCTCTGGCTCTGCTGCTGAA
GATGAACAAGTTTGTGACGGAGCTGGCGCTTTACGATATCGCAAATGTCGTCGGCGTTGC
CGCTGACCTGAGCCACTGCAACACCCCGGTGAAGGTTACTGGCTACACCGGCCCCGAGGA
GCTGGGCGCCTGCCTGAAGGGTGCTGATCTCATCGTTATTCCGGCTGGCGTGCCCCGCAA
GCCTGGCATGACCCGTGACGACCTGTTCAACACCAACGCTGGCATCGTTAAGGCGCTGGT
GGAGGCGGTCGCCAAGCACGCTCCCAACGCCGTGCTGGAGATTATCACCAACCCCGTCAA
CTCGACCGTGCCTATCGCTGTGGAGACCCTAAAGCTGGCGGGCGTGTATGACCCCAAGAA
GGTTATTGGTGTGACCTCGCTGGACATTGTCCGCGCCAACACCTTTGTGTCGGAGGCTAA
GGGCCTGGACATGAAGGACGTGGACGTGCCGGTCATTGGTGGCCACGCTGGCTCCACCAT
CCTGCCGCTGCTGTCTCAGACGACTCCCCCCGTGACCTTCACTGAGGCTGAGAAGAAGGC
CATGACCGACAAGATCGCCAACGCCGGCACCGTGGTGGTGGAGGCCAAGGCTGGCAAGGG
CTCCGCCACCTTGTCCATGGCCTACGCCGCCGCCCGCATGGCTGAGTCGACGCTGCTGGG
TCTGAACGGCGAGCCCAACATCTACGAGTGCGCCTTCGTGCAGTCGGACGTTGTTGCGGA
CTGCCCCTTCTTCGCCAGCAAGGTGCTGCTGGGCCCCAACGGCGTGGCCAAGGTGATGGG
CCTGGGCGAGCTGGACGCCTTCGAGCAGGCCGCCATGGCCGCCATGCTGCCGCAGCTCAA
GAGCGAGATCCAGAAGGGCCTCGACTTTGTCAAGAGCCCCCCCGCCCCCGCCTCGTAAAG
CGGACAGCGAGCTAATAAGGCAGCCCGGCTGCTGGTCTGCTATTGGAGATAGTGCGTAAG
CAGCTAGGATTGCAGATTGTGATGGCCGGGGGGACTGCTGCGCCAAGCGGTGTGCGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000904A_C01 KCC000904A_c01
         (1258 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T08177 malate dehydrogenase (EC 1.1.1.37), sodium acetate-i...   684  0.0
emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum]          403  e-111
dbj|BAC20686.1| putative malate dehydrogenase [Oryza sativa (jap...   395  e-109
dbj|BAB68116.1| putative NAD-malate dehydrogenase [Oryza sativa ...   394  e-108
pir||T09294 malate dehydrogenase (EC 1.1.1.37) precursor - alfal...   394  e-108

>pir||T08177 malate dehydrogenase (EC 1.1.1.37), sodium acetate-induced -
            Chlamydomonas reinhardtii gi|1762104|gb|AAB39506.1|
            NAD-dependent malate dehydrogenase
            gi|4096875|gb|AAD10324.1| NAD-dependent malate
            dehydrogenase [Chlamydomonas reinhardtii]
          Length = 355

 Score =  684 bits (1766), Expect = 0.0
 Identities = 355/355 (100%), Positives = 355/355 (100%)
 Frame = +2

Query: 71   MLLANRVNAGAARRVSGRAAAPIAVRAGRRSLVCEARKVALLGAAGGIGQPLALLLKMNK 250
            MLLANRVNAGAARRVSGRAAAPIAVRAGRRSLVCEARKVALLGAAGGIGQPLALLLKMNK
Sbjct: 1    MLLANRVNAGAARRVSGRAAAPIAVRAGRRSLVCEARKVALLGAAGGIGQPLALLLKMNK 60

Query: 251  FVTELALYDIANVVGVAADLSHCNTPVKVTGYTGPEELGACLKGADLIVIPAGVPRKPGM 430
            FVTELALYDIANVVGVAADLSHCNTPVKVTGYTGPEELGACLKGADLIVIPAGVPRKPGM
Sbjct: 61   FVTELALYDIANVVGVAADLSHCNTPVKVTGYTGPEELGACLKGADLIVIPAGVPRKPGM 120

Query: 431  TRDDLFNTNAGIVKALVEAVAKHAPNAVLEIITNPVNSTVPIAVETLKLAGVYDPKKVIG 610
            TRDDLFNTNAGIVKALVEAVAKHAPNAVLEIITNPVNSTVPIAVETLKLAGVYDPKKVIG
Sbjct: 121  TRDDLFNTNAGIVKALVEAVAKHAPNAVLEIITNPVNSTVPIAVETLKLAGVYDPKKVIG 180

Query: 611  VTSLDIVRANTFVSEAKGLDMKDVDVPVIGGHAGSTILPLLSQTTPPVTFTEAEKKAMTD 790
            VTSLDIVRANTFVSEAKGLDMKDVDVPVIGGHAGSTILPLLSQTTPPVTFTEAEKKAMTD
Sbjct: 181  VTSLDIVRANTFVSEAKGLDMKDVDVPVIGGHAGSTILPLLSQTTPPVTFTEAEKKAMTD 240

Query: 791  KIANAGTVVVEAKAGKGSATLSMAYAAARMAESTLLGLNGEPNIYECAFVQSDVVADCPF 970
            KIANAGTVVVEAKAGKGSATLSMAYAAARMAESTLLGLNGEPNIYECAFVQSDVVADCPF
Sbjct: 241  KIANAGTVVVEAKAGKGSATLSMAYAAARMAESTLLGLNGEPNIYECAFVQSDVVADCPF 300

Query: 971  FASKVLLGPNGVAKVMGLGELDAFEQAAMAAMLPQLKSEIQKGLDFVKSPPAPAS 1135
            FASKVLLGPNGVAKVMGLGELDAFEQAAMAAMLPQLKSEIQKGLDFVKSPPAPAS
Sbjct: 301  FASKVLLGPNGVAKVMGLGELDAFEQAAMAAMLPQLKSEIQKGLDFVKSPPAPAS 355

>emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum]
          Length = 412

 Score =  403 bits (1036), Expect = e-111
 Identities = 209/319 (65%), Positives = 253/319 (78%), Gaps = 2/319 (0%)
 Frame = +2

Query: 182  KVALLGAAGGIGQPLALLLKMNKFVTELALYDIANVVGVAADLSHCNTPVKVTGYTGPEE 361
            KVA+LGA+GGIGQPL+LL+KM+  V+EL LYDIANV GVAADLSHCNTP KV+ +TG  E
Sbjct: 95   KVAVLGASGGIGQPLSLLVKMSPLVSELNLYDIANVKGVAADLSHCNTPSKVSDFTGASE 154

Query: 362  LGACLKGADLIVIPAGVPRKPGMTRDDLFNTNAGIVKALVEAVAKHAPNAVLEIITNPVN 541
            L  CLKG +++VIPAGVPRKPGMTRDDLFN NA IVK LVEAVA + P+A + II+NPVN
Sbjct: 155  LANCLKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214

Query: 542  STVPIAVETLKLAGVYDPKKVIGVTSLDIVRANTFVSEAKGLDMKDVDVPVIGGHAGSTI 721
            STVPIA E LK  GVYDPKK+ GVT+LD+VRANTFV++ K L + DVDVPV+GGHAG TI
Sbjct: 215  STVPIAAEVLKRKGVYDPKKLFGVTTLDVVRANTFVAQKKSLRLIDVDVPVVGGHAGITI 274

Query: 722  LPLLSQTTPPVTFTEAEKKAMTDKIANAGTVVVEAKAGKGSATLSMAYAAARMAESTLLG 901
            LPLLS+T P  TFT+ E + +T +I NAGT VVEAKAG GSATLSMAYAAAR  ES+L  
Sbjct: 275  LPLLSKTKPSTTFTDEEVQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334

Query: 902  LNGEPNIYECAFVQSDVVADCPFFASKVLLGPNGVAKVM--GLGELDAFEQAAMAAMLPQ 1075
            L+G+ ++YECAFVQSD + + PFFAS+V LG NGV  ++   L  L  +EQ A+ A+ P+
Sbjct: 335  LDGDSDVYECAFVQSD-LTELPFFASRVKLGKNGVEALIPSDLQGLTEYEQKALDALKPE 393

Query: 1076 LKSEIQKGLDFVKSPPAPA 1132
            LKS I+KG+ FV+  P  A
Sbjct: 394  LKSSIEKGIGFVQKEPVAA 412

>dbj|BAC20686.1| putative malate dehydrogenase [Oryza sativa (japonica
            cultivar-group)]
          Length = 404

 Score =  395 bits (1016), Expect = e-109
 Identities = 208/335 (62%), Positives = 253/335 (75%), Gaps = 8/335 (2%)
 Frame = +2

Query: 146  RAGRRSLVCEAR--KVALLGAAGGIGQPLALLLKMNKFVTELALYDIANVVGVAADLSHC 319
            RAG R +V +A   KVA+LGAAGGIGQPL+LL+KM+  V+ L LYDIANV GV ADL HC
Sbjct: 66   RAGNR-VVAQAGGYKVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIANVDGVTADLGHC 124

Query: 320  NTPVKVTGYTGPEELGACLKGADLIVIPAGVPRKPGMTRDDLFNTNAGIVKALVEAVAKH 499
            NTP KV G+TG EEL  CL G D++VIPAGVPRKPGMTRDDLF  NAGIV+ LVEAVA H
Sbjct: 125  NTPAKVAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADH 184

Query: 500  APNAVLEIITNPVNSTVPIAVETLKLAGVYDPKKVIGVTSLDIVRANTFVSEAKGLDMKD 679
            AP A++ +I+NPVNSTVPIA E LK  GVYDP+K+ GVT+LD+VRANTFV+E KGL + D
Sbjct: 185  APAALVHVISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLAD 244

Query: 680  VDVPVIGGHAGSTILPLLSQTTPPVTFTEAEKKAMTDKIANAGTVVVE--AKAGKGSATL 853
            VDVPV+GGHA +TILPLLS+  P   FT+ E +A+T +I NAGT VVE  AKAG GSATL
Sbjct: 245  VDVPVVGGHAAATILPLLSKARPKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSATL 304

Query: 854  SMAYAAARMAESTLLGLNGEPNIYECAFVQSDVVADCPFFASKVLLGPNGVAKVMGLGE- 1030
            SMAYAAAR  E++L GL+G+ ++YEC++VQ   V + PFFA +V LG +GV +V   G  
Sbjct: 305  SMAYAAARFLEASLRGLDGDADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAGAE 364

Query: 1031 ---LDAFEQAAMAAMLPQLKSEIQKGLDFVKSPPA 1126
               L  FE  A+ A+ PQLK  I KG+ + +  PA
Sbjct: 365  LRGLTEFEARALEALKPQLKKSIDKGVAYAQQQPA 399

>dbj|BAB68116.1| putative NAD-malate dehydrogenase [Oryza sativa (japonica
            cultivar-group)] gi|20160639|dbj|BAB89584.1| putative
            NAD-malate dehydrogenase [Oryza sativa (japonica
            cultivar-group)]
          Length = 404

 Score =  394 bits (1013), Expect = e-108
 Identities = 203/320 (63%), Positives = 248/320 (77%), Gaps = 2/320 (0%)
 Frame = +2

Query: 182  KVALLGAAGGIGQPLALLLKMNKFVTELALYDIANVVGVAADLSHCNTPVKVTGYTGPEE 361
            KVA+LGAAGGIGQPL LL+KM+  V+ L LYDIANV GVAADLSHCNTP +V  +TGP E
Sbjct: 85   KVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIANVKGVAADLSHCNTPSQVLDFTGPSE 144

Query: 362  LGACLKGADLIVIPAGVPRKPGMTRDDLFNTNAGIVKALVEAVAKHAPNAVLEIITNPVN 541
            L  CLKG D++VIPAGVPRKPGMTRDDLFN NA IVK LVEAVA + P A + II+NPVN
Sbjct: 145  LANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFIHIISNPVN 204

Query: 542  STVPIAVETLKLAGVYDPKKVIGVTSLDIVRANTFVSEAKGLDMKDVDVPVIGGHAGSTI 721
            STVPIA E LK  GVY+PKK+ GVT+LD+VRANTF+++ K L + DVDVPV+GGHAG TI
Sbjct: 205  STVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGGHAGITI 264

Query: 722  LPLLSQTTPPVTFTEAEKKAMTDKIANAGTVVVEAKAGKGSATLSMAYAAARMAESTLLG 901
            LPLLS+T P VTFT  E + +T +I NAGT VVEAKAG GSATLSMAYAAAR  ES+L  
Sbjct: 265  LPLLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 324

Query: 902  LNGEPNIYECAFVQSDVVADCPFFASKVLLGPNGVAKVMG--LGELDAFEQAAMAAMLPQ 1075
            L G+P++YEC FVQS+ + +  FFAS+V LG NGV  ++   L  +  +E  A+ ++ P+
Sbjct: 325  LAGDPDVYECTFVQSE-LTELLFFASRVKLGKNGVESIISSDLEGVTEYEAKALESLKPE 383

Query: 1076 LKSEIQKGLDFVKSPPAPAS 1135
            LK+ I+KG++FV    A A+
Sbjct: 384  LKASIEKGIEFVHKQQAAAT 403

>pir||T09294 malate dehydrogenase (EC 1.1.1.37) precursor - alfalfa
            gi|2827084|gb|AAB99757.1| malate dehydrogenase precursor
            [Medicago sativa]
          Length = 408

 Score =  394 bits (1012), Expect = e-108
 Identities = 204/319 (63%), Positives = 250/319 (77%), Gaps = 2/319 (0%)
 Frame = +2

Query: 182  KVALLGAAGGIGQPLALLLKMNKFVTELALYDIANVVGVAADLSHCNTPVKVTGYTGPEE 361
            KVA+LGAAGGIGQPLALL+KM+  V++L LYDIANV GVAAD+SHCNTP KV  +TG  E
Sbjct: 91   KVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVLDFTGASE 150

Query: 362  LGACLKGADLIVIPAGVPRKPGMTRDDLFNTNAGIVKALVEAVAKHAPNAVLEIITNPVN 541
            L  CLKG D++VIPAGVPRKPGMTRDDLFN NAGIV+ LV AVA + PNA + II+NPVN
Sbjct: 151  LANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVTAVADNCPNAFIHIISNPVN 210

Query: 542  STVPIAVETLKLAGVYDPKKVIGVTSLDIVRANTFVSEAKGLDMKDVDVPVIGGHAGSTI 721
            STVPIA E LK  GVYDPKK+ GV++LD+VRANTFV++ K L + DVDVPV+GGHAG TI
Sbjct: 211  STVPIAAEILKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITI 270

Query: 722  LPLLSQTTPPVTFTEAEKKAMTDKIANAGTVVVEAKAGKGSATLSMAYAAARMAESTLLG 901
            LPLLS+T P V+FT+ E + +T +I NAGT VVEAKAG GSATLSMAYAAAR  ES+L  
Sbjct: 271  LPLLSKTKPSVSFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 330

Query: 902  LNGEPNIYECAFVQSDVVADCPFFASKVLLGPNGVAKVM--GLGELDAFEQAAMAAMLPQ 1075
            L+G+ ++YEC+FVQSD + D PFFAS+V +G  GV  ++   L  L  +EQ A+ A+ P+
Sbjct: 331  LDGDADVYECSFVQSD-LTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPE 389

Query: 1076 LKSEIQKGLDFVKSPPAPA 1132
            LK+ I+KG+ F +     A
Sbjct: 390  LKASIEKGVAFAQKQTVTA 408



EST assemble image


clone accession position
1 HC090d09_r AV638759 1 538
2 MX218g01_r BP090095 13 507
3 CM002d06_r AV397848 95 646
4 MXL062f03_r BP096661 95 486
5 LCL001e04_r AV626039 101 620
6 MX068h04_r BP088778 102 520
7 HC047f01_r AV635536 102 618
8 HC011f01_r AV632703 103 500
9 MX207g12_r BP089466 107 460
10 MXL031b06_r BP094853 248 642
11 MX220h05_r BP090237 322 677
12 HC096g06_r AV639241 406 916
13 HC046d11_r AV635447 676 1057
14 HC005d11_r AV632220 715 1236
15 MX008e09_r BP086421 772 1160
16 MX009e03_r BP086467 772 1235
17 CM009d06_r AV397650 784 1388




Chlamydomonas reinhardtii
Kazusa DNA Research Institute