KCC000900A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000900A_C01 KCC000900A_c01
ATTATATGCCAGTAGCAAATCTGACAATTCTTCCTGAACTAAATTTCTGTCCGCTTGCAC
CACACGCAACCAAGTGCGTTTCTCTCCTCAATTCCCCACGATGCTCGCGTCGCTGCTTCC
CTCGGCCGCTTCGGCCCTCTCCGCGCCTGCTGTGGGTGCCCTGCCCCTCCTGGCGCAGCA
GCTAGGCCGGCGCCTGTACCACAAGAACGTAGTGGAGCACTATGAGCGCCCCCGCAACGT
TGGCTCGTTCGACAAGAGCGACCCCGACGTTGGCACCGGCCTCGGTGGGCGCTCCTGCAT
GCGGCGATGTCATGAAGCTGCAAATTAAGGTGGACGAGCAGGGCAACATCGTGGACGCGC
GCTTTAAGACGTTTGGATGCGGTTCGGCCATCGCCAGCAGCAGCGTGGCGACGGAGTGGG
TGAAGGGCAAGTCGCTGGACGAGGTGTTAAAGATTAAGAACAGCGACATCGCCAAGCATC
TCAGCCTGCCGCCCGCTCAGCTGCACTGCAGCATGCTGGCGGAGGATGCCATCAAGGCTG
CGGTGAAGGACATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000900A_C01 KCC000900A_c01
         (554 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_315834.1| ENSANGP00000010440 [Anopheles gambiae] gi|21298...   152  1e-46
emb|CAE50167.1| SI:zC191D15.2 (novel protein similar to human an...   154  1e-45
gb|AAQ83894.1| NifU-like protein [Branchiostoma belcheri tsingta...   149  3e-45
gb|AAL29442.1|AF428267_1 iron-sulfur cluster assembly protein Is...   180  1e-44
gb|AAH53823.1| Unknown (protein for MGC:64573) [Xenopus laevis]       142  3e-42

>ref|XP_315834.1| ENSANGP00000010440 [Anopheles gambiae] gi|21298619|gb|EAA10764.1|
           ENSANGP00000010440 [Anopheles gambiae str. PEST]
          Length = 188

 Score =  152 bits (383), Expect(2) = 1e-46
 Identities = 72/89 (80%), Positives = 83/89 (92%)
 Frame = +3

Query: 285 VGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVATEWVKGKSLDEVLKIKNS 464
           VGAPACGDVMKLQIKVDE G I+DA+FKTFGCGSAIASSS+ATEWVKGK+LD+  ++KN+
Sbjct: 90  VGAPACGDVMKLQIKVDENGKIIDAKFKTFGCGSAIASSSLATEWVKGKTLDQAGQLKNT 149

Query: 465 DIAKHLSLPPAQLHCSMLAEDAIKAAVKD 551
           DIAK LSLPP +LHCSMLAEDAIKAA++D
Sbjct: 150 DIAKELSLPPVKLHCSMLAEDAIKAALED 178

 Score = 56.6 bits (135), Expect(2) = 1e-46
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +2

Query: 173 AQQLGRRLYHKNVVEHYERPRNVGSFDKSDPDVGTGLGG 289
           A+ +   LYH+NV+EHYE PRNVGS DK D +VGTGL G
Sbjct: 53  ARSVPAALYHQNVLEHYENPRNVGSLDKKDKNVGTGLVG 91

>emb|CAE50167.1| SI:zC191D15.2 (novel protein similar to human and mouse nitrogen
           fixation cluster-like (NIFU)) [Danio rerio]
          Length = 165

 Score =  154 bits (389), Expect(2) = 1e-45
 Identities = 74/89 (83%), Positives = 82/89 (91%)
 Frame = +3

Query: 285 VGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVATEWVKGKSLDEVLKIKNS 464
           VGAPACGDVMKLQI+VDE G I+DARFKTFGCGSAIASSS+ATEWVKGKS+DE LKIKN+
Sbjct: 60  VGAPACGDVMKLQIQVDENGKIIDARFKTFGCGSAIASSSLATEWVKGKSIDEALKIKNT 119

Query: 465 DIAKHLSLPPAQLHCSMLAEDAIKAAVKD 551
           +IAK L LPP +LHCSMLAEDAIKAA+ D
Sbjct: 120 EIAKELCLPPVKLHCSMLAEDAIKAALAD 148

 Score = 50.8 bits (120), Expect(2) = 1e-45
 Identities = 22/31 (70%), Positives = 25/31 (79%)
 Frame = +2

Query: 197 YHKNVVEHYERPRNVGSFDKSDPDVGTGLGG 289
           YHK VV+HYE PRNVGS DK+  +VGTGL G
Sbjct: 31  YHKKVVDHYENPRNVGSLDKNAKNVGTGLVG 61

>gb|AAQ83894.1| NifU-like protein [Branchiostoma belcheri tsingtaunese]
          Length = 164

 Score =  149 bits (375), Expect(2) = 3e-45
 Identities = 72/89 (80%), Positives = 79/89 (87%)
 Frame = +3

Query: 285 VGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVATEWVKGKSLDEVLKIKNS 464
           VGAPACGDVMKLQI VD+ G IVDA+FKTFGCGSAIASSS+ATEWVKGKS+DE   IKN+
Sbjct: 56  VGAPACGDVMKLQILVDDDGKIVDAKFKTFGCGSAIASSSLATEWVKGKSMDEAATIKNT 115

Query: 465 DIAKHLSLPPAQLHCSMLAEDAIKAAVKD 551
           DIAK L LPP +LHCSMLAEDAI+AAV D
Sbjct: 116 DIAKELCLPPVKLHCSMLAEDAIRAAVND 144

 Score = 55.1 bits (131), Expect(2) = 3e-45
 Identities = 27/48 (56%), Positives = 31/48 (64%)
 Frame = +2

Query: 146 PAVGALPLLAQQLGRRLYHKNVVEHYERPRNVGSFDKSDPDVGTGLGG 289
           P VGA        G   YH+NV++HYE PRNVGS DK+D  VGTGL G
Sbjct: 13  PMVGARATAVPTAG---YHENVIDHYENPRNVGSMDKNDKKVGTGLVG 57

>gb|AAL29442.1|AF428267_1 iron-sulfur cluster assembly protein IscU [Chlamydomonas
           reinhardtii]
          Length = 163

 Score =  180 bits (456), Expect = 1e-44
 Identities = 90/108 (83%), Positives = 95/108 (87%)
 Frame = +3

Query: 231 PATLARSTRATPTLAPASVGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVA 410
           P  +    ++ P +    VGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVA
Sbjct: 44  PRNVGSFDKSDPDVGTGLVGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVA 103

Query: 411 TEWVKGKSLDEVLKIKNSDIAKHLSLPPAQLHCSMLAEDAIKAAVKDI 554
           TEWVKGKSLDEVLKIKNSDIAKHLSLPP +LHCSMLAEDAIKAAVKDI
Sbjct: 104 TEWVKGKSLDEVLKIKNSDIAKHLSLPPVKLHCSMLAEDAIKAAVKDI 151

 Score =  124 bits (310), Expect = 1e-27
 Identities = 62/63 (98%), Positives = 62/63 (98%)
 Frame = +2

Query: 101 MLASLLPSAASALSAPAVGALPLLAQQLGRRLYHKNVVEHYERPRNVGSFDKSDPDVGTG 280
           MLASLLPSAASALSAPAVGALPLLAQQLGRRLYHKNVVEHYERPRNVGSFDKSDPDVGTG
Sbjct: 1   MLASLLPSAASALSAPAVGALPLLAQQLGRRLYHKNVVEHYERPRNVGSFDKSDPDVGTG 60

Query: 281 LGG 289
           L G
Sbjct: 61  LVG 63

>gb|AAH53823.1| Unknown (protein for MGC:64573) [Xenopus laevis]
          Length = 158

 Score =  142 bits (359), Expect(2) = 3e-42
 Identities = 67/89 (75%), Positives = 79/89 (88%)
 Frame = +3

Query: 285 VGAPACGDVMKLQIKVDEQGNIVDARFKTFGCGSAIASSSVATEWVKGKSLDEVLKIKNS 464
           VGAPACGDVMK QI+VD  G I++A+FKTFGCGSAIASSS+ATEWVKGK++DE + IKN+
Sbjct: 56  VGAPACGDVMKQQIEVDANGKIIEAKFKTFGCGSAIASSSLATEWVKGKTVDEAMTIKNT 115

Query: 465 DIAKHLSLPPAQLHCSMLAEDAIKAAVKD 551
           DIAK L LPP +LHCSMLAEDAI+AA+ D
Sbjct: 116 DIAKELCLPPVKLHCSMLAEDAIRAALAD 144

 Score = 50.8 bits (120), Expect(2) = 3e-42
 Identities = 22/31 (70%), Positives = 25/31 (79%)
 Frame = +2

Query: 197 YHKNVVEHYERPRNVGSFDKSDPDVGTGLGG 289
           YHK VV+HYE PRNVGS DK+  +VGTGL G
Sbjct: 27  YHKKVVDHYENPRNVGSLDKNAKNVGTGLVG 57



EST assemble image


clone accession position
1 LC064c07_r AV623473 1 622
2 LC064g03_r AV623500 11 623
3 LC082d03_r AV624765 109 633
4 LC011h02_r AV619693 111 639
5 LC022c08_r AV620447 111 629
6 LC068c12_r AV623764 111 624
7 MX025a12_r BP087097 111 452
8 LC091d06_r AV625355 113 471
9 LC040f05_r AV621762 123 540
10 HC054e07_r AV636048 124 431
11 CM002c01_r AV397853 125 660
12 HC057f01_r AV636292 125 411
13 HC090d11_r AV638761 149 556




Chlamydomonas reinhardtii
Kazusa DNA Research Institute