KCC000896A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000896A_C01 KCC000896A_c01
cagcacttcCAAACCTGTTGGCTCTGCTACGCTCCTTGACGCTGCGACTTTGCTTCTGCA
CAGTCTCTCCGCCTCGCCATCATTTGCCACATTTCGTCCACAACACAATGCAGCAAGTAC
TGATTCGTATGCCTACGGCGGGAGGCGCAAAGGCGTCGGGGCCGCTTCTGCAGCAACTTG
CAAAGTCGCTGGAGACGGAGGGCGCGCAGCTGGCCAGCAAAATAAAGGGCATAGTGGTGT
TCAAGATCGACGACGCCGAGTGGAGCCTGGACCTGAGCGAGGGCAGCTCGGGGGCGCTGT
ACGAGGGGCCGCCGGCGGAGGGCGCCAAGCCCGACCTCACCCTCACCACCAGCGACGCCA
CCTTCGCGCAGATGGTCATGGGCAAGGTCAACCCGCAGACGGCCTTCCTGACGCGCAAGC
TCAAGATCAACGGCTCCATGGGCATGGCTATGAAGCTGGCGCCCGTGCTGGAGGCGGCGC
AGCCCAGGGCCAAGATGTGAGAGGTGGCAGCAGGGTGCAGGGCGCAGGGCACGGnGTGGT
GTGGCCGCTGACTGGCTGACAGGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000896A_C01 KCC000896A_c01
         (565 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P07857|NLTP_BOVIN Nonspecific lipid-transfer protein (Sterol ...    82  7e-15
gb|AAA03559.1| sterol carrier protein-2 gi|13543503|gb|AAH05911....    80  2e-14
gb|AAA03558.1| sterol carrier protein-2                                80  2e-14
ref|NP_002970.2| sterol carrier protein 2 [Homo sapiens] gi|2507...    80  2e-14
gb|AAB41286.1| sterol carrier protein-X/sterol carrier protein-2...    80  2e-14

>sp|P07857|NLTP_BOVIN Nonspecific lipid-transfer protein (Sterol carrier protein 2)
           (SCP-2)
          Length = 121

 Score = 81.6 bits (200), Expect = 7e-15
 Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
 Frame = +3

Query: 165 LLQQLAKSLETEGAQLASKIKGIVVFKIDD------AEWSLDLSEGSSGALYEGPPAEGA 326
           + +++ K LE EG Q   KI GI  FK+ D      A W +D+  G    L    P    
Sbjct: 12  VFKEIEKKLEDEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVL----PNSDK 67

Query: 327 KPDLTLTTSDATFAQMVMGKVNPQTAFLTRKLKINGSMGMAMKL 458
           K D T+T +D+    ++ GK+NPQTAF   KLKING+MG+AMKL
Sbjct: 68  KADCTITMADSDLLALMTGKMNPQTAFFQGKLKINGNMGLAMKL 111

>gb|AAA03559.1| sterol carrier protein-2 gi|13543503|gb|AAH05911.1| SCP2 protein
           [Homo sapiens]
          Length = 143

 Score = 80.1 bits (196), Expect = 2e-14
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
 Frame = +3

Query: 165 LLQQLAKSLETEGAQLASKIKGIVVFKIDD------AEWSLDLSEGSSGALYEGPPAEGA 326
           + +++ K LE EG Q   KI GI  FK+ D      A W +D+  G    L    P    
Sbjct: 32  VFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVL----PNSDK 87

Query: 327 KPDLTLTTSDATFAQMVMGKVNPQTAFLTRKLKINGSMGMAMKL 458
           K D T+T +D+ F  ++ GK+NPQ+AF   KLKI G+MG+AMKL
Sbjct: 88  KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKL 131

>gb|AAA03558.1| sterol carrier protein-2
          Length = 289

 Score = 80.1 bits (196), Expect = 2e-14
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
 Frame = +3

Query: 165 LLQQLAKSLETEGAQLASKIKGIVVFKIDD------AEWSLDLSEGSSGALYEGPPAEGA 326
           + +++ K LE EG Q   KI GI  FK+ D      A W +D+  G    L    P    
Sbjct: 178 VFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVL----PNSDK 233

Query: 327 KPDLTLTTSDATFAQMVMGKVNPQTAFLTRKLKINGSMGMAMKL 458
           K D T+T +D+ F  ++ GK+NPQ+AF   KLKI G+MG+AMKL
Sbjct: 234 KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKL 277

>ref|NP_002970.2| sterol carrier protein 2 [Homo sapiens]
           gi|2507456|sp|P22307|NLTP_HUMAN Nonspecific
           lipid-transfer protein, mitochondrial precursor (NSL-TP)
           (Sterol carrier protein 2) (SCP-2) (Sterol carrier
           protein X) (SCP-X) (SCPX) gi|2136204|pir||I38205 sterol
           carrier protein-X/sterol carrier protein-2 - human
           gi|432975|gb|AAA03557.1| sterol carrier protein-X/sterol
           carrier protein-2
          Length = 547

 Score = 80.1 bits (196), Expect = 2e-14
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
 Frame = +3

Query: 165 LLQQLAKSLETEGAQLASKIKGIVVFKIDD------AEWSLDLSEGSSGALYEGPPAEGA 326
           + +++ K LE EG Q   KI GI  FK+ D      A W +D+  G    L    P    
Sbjct: 436 VFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVL----PNSDK 491

Query: 327 KPDLTLTTSDATFAQMVMGKVNPQTAFLTRKLKINGSMGMAMKL 458
           K D T+T +D+ F  ++ GK+NPQ+AF   KLKI G+MG+AMKL
Sbjct: 492 KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKL 535

>gb|AAB41286.1| sterol carrier protein-X/sterol carrier protein-2 [Homo sapiens]
          Length = 547

 Score = 80.1 bits (196), Expect = 2e-14
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
 Frame = +3

Query: 165 LLQQLAKSLETEGAQLASKIKGIVVFKIDD------AEWSLDLSEGSSGALYEGPPAEGA 326
           + +++ K LE EG Q   KI GI  FK+ D      A W +D+  G    L    P    
Sbjct: 436 VFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVL----PNSDK 491

Query: 327 KPDLTLTTSDATFAQMVMGKVNPQTAFLTRKLKINGSMGMAMKL 458
           K D T+T +D+ F  ++ GK+NPQ+AF   KLKI G+MG+AMKL
Sbjct: 492 KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKL 535



EST assemble image


clone accession position
1 LC076c07_r AV624333 1 502
2 CM020d12_r AV397487 10 582
3 CM001g11_r AV386512 10 565




Chlamydomonas reinhardtii
Kazusa DNA Research Institute