KCC000884A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000884A_C01 KCC000884A_c01
ccgatTCATTCTCGCTGAATAAGCGACAGGCAAGATGCATGCCGCTAACCCTTCACAGCG
CGCTGCGCTCAGCCAGCGGGCAGATGCCGCTAACGCTCACCAACGCTTAGCGCTGCCTCT
TTCGAGCCGCCCACTGCACCGTTCTAGTGTCTTTTCATCACGGCGCCTGCCGATTCTTCA
GGCGGGATCGACTGACACCTACTCGCGCCCTATTTCCGCGCCTCGCCTGGTGCAGCATAA
GAGCGAGGCCTACTGGTTTTATGCGGGTCTGAGCCAGGTCTATGACCACATCGTTAACCC
TGGCCACTGGACTGAGGACATGCGTGATGACGCGTTGGCGCCCGCCAAGCTGGACGACCC
CAACCTCAAGGTGGTTGACGTGGGCGGAGGCACCGGCTTCTGCACGCTGGGAGTGGTCAA
GACCGTCAAGCCTGAGAACGTGACGCTGATGGACCAGTCACCGCACCAGCTGGCCAAGGC
CAAGGCCAAGCCCGCGCTCAAGGGCGTGACCATCCTGGAGGGCGACGCCGAGGACCTGCC
CTTCCCCACCGACACCTTTGACCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000884A_C01 KCC000884A_c01
         (564 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ90413.1| MPBQ/MSBQ methyltransferase [Chlamydomonas reinha...   358  4e-98
ref|NP_191900.1| chloroplast inner envelope membrane protein, pu...   189  3e-47
gb|AAM63077.1| putative chloroplast inner envelope protein [Arab...   189  3e-47
dbj|BAB62076.1| APG1 [Arabidopsis thaliana]                           189  3e-47
dbj|BAC83032.1| putative 37kDa chloroplast inner envelope membra...   188  4e-47

>gb|AAQ90413.1| MPBQ/MSBQ methyltransferase [Chlamydomonas reinhardtii]
          Length = 337

 Score =  358 bits (918), Expect = 4e-98
 Identities = 176/176 (100%), Positives = 176/176 (100%)
 Frame = +2

Query: 35  MHAANPSQRAALSQRADAANAHQRLALPLSSRPLHRSSVFSSRRLPILQAGSTDTYSRPI 214
           MHAANPSQRAALSQRADAANAHQRLALPLSSRPLHRSSVFSSRRLPILQAGSTDTYSRPI
Sbjct: 1   MHAANPSQRAALSQRADAANAHQRLALPLSSRPLHRSSVFSSRRLPILQAGSTDTYSRPI 60

Query: 215 SAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDPNLKVVDVGGGT 394
           SAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDPNLKVVDVGGGT
Sbjct: 61  SAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDPNLKVVDVGGGT 120

Query: 395 GFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLPFPTDTFD 562
           GFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLPFPTDTFD
Sbjct: 121 GFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLPFPTDTFD 176

>ref|NP_191900.1| chloroplast inner envelope membrane protein, putative [Arabidopsis
           thaliana] gi|11358638|pir||T49182 probable chloroplast
           inner envelope protein - Arabidopsis thaliana
           gi|7573324|emb|CAB87794.1| putative chloroplast inner
           envelope protein [Arabidopsis thaliana]
          Length = 338

 Score =  189 bits (479), Expect = 3e-47
 Identities = 88/127 (69%), Positives = 103/127 (80%)
 Frame = +2

Query: 182 AGSTDTYSRPISAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDP 361
           + S+ + SRP + PR +QHK EAYWFY  LS VYDH++NPGHWTEDMRDDAL PA L  P
Sbjct: 51  SSSSVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHP 110

Query: 362 NLKVVDVGGGTGFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLP 541
           +++VVDVGGGTGF TLG+VKTVK +NVT++DQSPHQLAKAK K  LK   I+EGDAEDLP
Sbjct: 111 DMRVVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP 170

Query: 542 FPTDTFD 562
           FPTD  D
Sbjct: 171 FPTDYAD 177

>gb|AAM63077.1| putative chloroplast inner envelope protein [Arabidopsis thaliana]
          Length = 338

 Score =  189 bits (479), Expect = 3e-47
 Identities = 88/127 (69%), Positives = 103/127 (80%)
 Frame = +2

Query: 182 AGSTDTYSRPISAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDP 361
           + S+ + SRP + PR +QHK EAYWFY  LS VYDH++NPGHWTEDMRDDAL PA L  P
Sbjct: 51  SSSSVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHP 110

Query: 362 NLKVVDVGGGTGFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLP 541
           +++VVDVGGGTGF TLG+VKTVK +NVT++DQSPHQLAKAK K  LK   I+EGDAEDLP
Sbjct: 111 DMRVVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP 170

Query: 542 FPTDTFD 562
           FPTD  D
Sbjct: 171 FPTDYAD 177

>dbj|BAB62076.1| APG1 [Arabidopsis thaliana]
          Length = 338

 Score =  189 bits (479), Expect = 3e-47
 Identities = 88/127 (69%), Positives = 103/127 (80%)
 Frame = +2

Query: 182 AGSTDTYSRPISAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDP 361
           + S+ + SRP + PR +QHK EAYWFY  LS VYDH++NPGHWTEDMRDDAL PA L  P
Sbjct: 51  SSSSVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHP 110

Query: 362 NLKVVDVGGGTGFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLP 541
           +++VVDVGGGTGF TLG+VKTVK +NVT++DQSPHQLAKAK K  LK   I+EGDAEDLP
Sbjct: 111 DMRVVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP 170

Query: 542 FPTDTFD 562
           FPTD  D
Sbjct: 171 FPTDYAD 177

>dbj|BAC83032.1| putative 37kDa chloroplast inner envelope membrane polypeptide
           precursor [Oryza sativa (japonica cultivar-group)]
          Length = 330

 Score =  188 bits (478), Expect = 4e-47
 Identities = 88/120 (73%), Positives = 99/120 (82%)
 Frame = +2

Query: 203 SRPISAPRLVQHKSEAYWFYAGLSQVYDHIVNPGHWTEDMRDDALAPAKLDDPNLKVVDV 382
           +RP S PR +QHK EA+WFY  LS VYDH++NPGHWTEDMRDDAL PA+L    LKVVDV
Sbjct: 51  ARPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAELYHHGLKVVDV 110

Query: 383 GGGTGFCTLGVVKTVKPENVTLMDQSPHQLAKAKAKPALKGVTILEGDAEDLPFPTDTFD 562
           GGGTGF TLG+VK V  ENVTL+DQSPHQL KA+ K AL GV I+EGDAEDLP+PTDTFD
Sbjct: 111 GGGTGFTTLGIVKHVDNENVTLLDQSPHQLEKARQKVALNGVNIIEGDAEDLPYPTDTFD 170



EST assemble image


clone accession position
1 LC092a10_r AV625401 1 490
2 LC006c05_r AV619295 6 507
3 CM001c02_r AV386497 16 564
4 CM033h02_r AV388395 41 532




Chlamydomonas reinhardtii
Kazusa DNA Research Institute