Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000883A_C01 KCC000883A_c01
(1336 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_039845.1| Nuclear protein EBNA2 [Human herpesvirus 4] gi|... 45 0.004
gb|AAA45903.1| nuclear protein EBNA2 45 0.004
ref|NP_077815.1| zinc finger protein RIN ZF [Rattus norvegicus] ... 42 0.025
pir||B41132 collagen-related protein 2 - Hydra magnipapillata (f... 41 0.055
ref|XP_344686.1| similar to gastric mucin [Rattus norvegicus] 40 0.072
>ref|NP_039845.1| Nuclear protein EBNA2 [Human herpesvirus 4]
gi|119111|sp|P12978|EBN2_EBV EBNA-2 NUCLEAR PROTEIN
gi|1083964|pir||S42442 nuclear protein EBNA2 - human
herpesvirus 4 gi|1632787|emb|CAA24877.1| BYRF1, encodes
EBNA-2 (Dambaugh et al, 1984; Dillner et al, 1984) [Human
herpesvirus 4] gi|23893590|emb|CAD53395.1| EBNA-2 nuclear
protein [Human herpesvirus 4]
Length = 487
Score = 44.7 bits (104), Expect = 0.004
Identities = 36/125 (28%), Positives = 53/125 (41%), Gaps = 2/125 (1%)
Frame = -2
Query: 1173 PRYSPRRDQLMQCATRFSPPLPTKCLTLYVPHTPPAPELLEATPQLSGANSKAVHLRHLS 994
PR +P + +M R +PP P TL VP P P L TP L+ L
Sbjct: 186 PRLTPPQPLMMP--PRPTPPTPLPPATLTVPPRPTRPTTLPPTPLLTVLQRPT----ELQ 239
Query: 993 PTPSACRIHPSAITIRSHSASHTTYATIHCEPKT--PRNHNLFGSCDSTRAPLARSVPTA 820
PTPS R+H + + S T+ + +P + PR+ +F + P ++ P A
Sbjct: 240 PTPSPPRMHLPVLHVPDQSMHPLTHQSTPNDPDSPEPRSPTVFYNIPPMPLPPSQLPPPA 299
Query: 819 AQPHP 805
A P
Sbjct: 300 APAQP 304
>gb|AAA45903.1| nuclear protein EBNA2
Length = 490
Score = 44.7 bits (104), Expect = 0.004
Identities = 36/125 (28%), Positives = 53/125 (41%), Gaps = 2/125 (1%)
Frame = -2
Query: 1173 PRYSPRRDQLMQCATRFSPPLPTKCLTLYVPHTPPAPELLEATPQLSGANSKAVHLRHLS 994
PR +P + +M R +PP P TL VP P P L TP L+ L
Sbjct: 189 PRLTPPQPLMMP--PRPTPPTPLPPATLTVPPRPTRPTTLPPTPLLTVLQRPT----ELQ 242
Query: 993 PTPSACRIHPSAITIRSHSASHTTYATIHCEPKT--PRNHNLFGSCDSTRAPLARSVPTA 820
PTPS R+H + + S T+ + +P + PR+ +F + P ++ P A
Sbjct: 243 PTPSPPRMHLPVLHVPDQSMHPLTHQSTPNDPDSPEPRSPTVFYNIPPMPLPPSQLPPPA 302
Query: 819 AQPHP 805
A P
Sbjct: 303 APAQP 307
>ref|NP_077815.1| zinc finger protein RIN ZF [Rattus norvegicus]
gi|4557143|gb|AAD22522.1|AF091457_1 zinc finger protein
RIN ZF [Rattus norvegicus]
Length = 836
Score = 42.0 bits (97), Expect = 0.025
Identities = 29/81 (35%), Positives = 37/81 (44%)
Frame = +3
Query: 45 GHGCGGHGGGGGQAQQLGAQRPGERQGAQEQAPQPAPVEQHAVLSAPLLRARPKTSGGDA 224
G G G+G GG A +LG R G R+G ++ AP+ A R P SG +
Sbjct: 2 GPGRRGNGIGGPGAPRLGGLRRGGRRGGRQGV--AAPLGHGRPRLAGRRRGGPPASGKEP 59
Query: 225 SDCAAAMNTRRELRRQWLQRR 287
SD RR R+QW Q R
Sbjct: 60 SDSGLPRGRRRGSRQQWQQSR 80
>pir||B41132 collagen-related protein 2 - Hydra magnipapillata (fragment)
gi|9449|emb|CAA43380.1| mini-collagen [Hydra sp.]
Length = 142
Score = 40.8 bits (94), Expect = 0.055
Identities = 18/32 (56%), Positives = 18/32 (56%)
Frame = -1
Query: 97 PSCCA*PPPPPCPPQPWPKSPSRGPAPAWAGP 2
P CCA PPPPP PP P P P P P A P
Sbjct: 41 PICCAPPPPPPPPPPPPPPPPPPPPPPPVAIP 72
>ref|XP_344686.1| similar to gastric mucin [Rattus norvegicus]
Length = 1682
Score = 40.4 bits (93), Expect = 0.072
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 8/108 (7%)
Frame = -2
Query: 1119 PPLPTKCLTLYVPHTPPAPE------LLEATPQLSGANSKAVHLRHLSPTPSACRIHPSA 958
PP C+T+ + H+ PA + LL + S +S V L H +P PS C PS
Sbjct: 1441 PPSQCSCITVLLHHSAPASQCSSITVLLHHSAPASQCSSITVLLHHSAP-PSQC---PSI 1496
Query: 957 ITIRSHSASHTTYATIHCEPKTPRNHNLF--GSCDSTRAPLARSVPTA 820
+ HSA + ++I C T H+ C PL S P +
Sbjct: 1497 TVLLHHSAPPSQCSSIKCSSITVFLHHSAPPSQCSCITVPLHHSAPAS 1544
