Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000879A_C01 KCC000879A_c01
(556 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00089346.1| COG0583: Transcriptional regulator [Azotobact... 47 1e-04
ref|XP_065796.2| similar to ribosomal protein L23 [Homo sapiens] 42 0.007
ref|ZP_00007644.1| COG0673: Predicted dehydrogenases and related... 41 0.009
ref|NP_627184.1| putative integral membrane protein [Streptomyce... 40 0.016
ref|NP_519335.1| PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solan... 40 0.016
>ref|ZP_00089346.1| COG0583: Transcriptional regulator [Azotobacter vinelandii]
Length = 484
Score = 47.4 bits (111), Expect = 1e-04
Identities = 50/148 (33%), Positives = 63/148 (41%), Gaps = 5/148 (3%)
Frame = +2
Query: 98 TSPQPCWLLP-GLLPVLSPARAR--PPRRPFALAG*PCAPRRRLWRPLLRRSRSPWSRVL 268
TSP P W + G SP + P RR A A PCA R R +RRSRSP +
Sbjct: 21 TSPSPNWAISAGTASRASPTTSSGWPGRRDSACARPPCAFPGRTGRSSVRRSRSP--TLC 78
Query: 269 VAVAALWRRAWS*STSCLCPSRPTLCSLSPPW--PSSRALLAAAPWALRCPLATSNWSAT 442
+ RR S S C PT CS SP W R +A P AT+ W+ T
Sbjct: 79 STGSRRARRTVSPSVRCC----PTACSPSPSWWCRFCRRAACSAGNTPAIPCATT-WAWT 133
Query: 443 WSSTSLAASSKWWNFHVGSQDTPWSVAG 526
ST++ + W G+ P + AG
Sbjct: 134 CPSTAIVRDA-WREAPAGAYHLPPAAAG 160
>ref|XP_065796.2| similar to ribosomal protein L23 [Homo sapiens]
Length = 328
Score = 41.6 bits (96), Expect = 0.007
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Frame = -1
Query: 466 RCERSTRPRSAPVAGRQRTS*RPRSCG*QCPRRRPRWA**TQGGPAWAEAGSASAPCPSP 287
R +++ R A +G + RP CP RR R GGPA + + +P
Sbjct: 46 RTDKADRDWEAARSGCCDSPLRPSRGSPPCPGRRRR-----AGGPAEPRPAAPAPGALAP 100
Query: 286 QSCDGHEDPTPWTPRTPQERPPQPPPRRARSP-------GEGKWAPWRPGA 155
C P PWT RPP+ P +A P E W W P A
Sbjct: 101 SGCGLFPMPEPWT------RPPKSGPAKAAQPVSQGPSRAEFSWGAWVPAA 145
>ref|ZP_00007644.1| COG0673: Predicted dehydrogenases and related proteins [Rhodobacter
sphaeroides]
Length = 621
Score = 41.2 bits (95), Expect = 0.009
Identities = 37/97 (38%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Frame = +3
Query: 126 PGFCPSFHQRAPGR----QGAHLPSPGDRARRGGGCGGRS*GVRGVHGVGSSWPSQLCGE 293
P P+ R PGR + HLP G RARR GG R R H G CG
Sbjct: 68 PSRAPARGHRLPGRTRGLRAEHLPPLGHRARRPGGHHRRGLSRRAPHPAGGG-----CGR 122
Query: 294 GHGAEALPASAQAGP-----PCVH*A----HRGRRRG 377
G LPA AGP C H A R RRRG
Sbjct: 123 -RGDRHLPARGDAGPRPPHGGCPHGADDRPSRDRRRG 158
>ref|NP_627184.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|6911990|emb|CAB72206.1| putative integral membrane
protein [Streptomyces coelicolor A3(2)]
Length = 315
Score = 40.4 bits (93), Expect = 0.016
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -1
Query: 382 QCPRRRPRWA**TQGGPAWAEAGSASAPCPSPQSCDGHEDPTPWTP-RTPQERPPQPPPR 206
Q P+++P GGP A+ A P P Q + P+ P +T Q PPQ PP+
Sbjct: 224 QPPQQQP------YGGPQQAQQPYAPQPVPQAQPYAAPQAQQPYAPPQTQQPYPPQQPPQ 277
Query: 205 RARSPGEGKWAPWRPGARW*KDGQKPGE*PAW 110
P + +AP +P + G P + P W
Sbjct: 278 PYAQPQQQPYAPPQPQQPYPAQGH-PQQNPHW 308
>ref|NP_519335.1| PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
gi|17428228|emb|CAD14916.1| PROBABLE TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 367
Score = 40.4 bits (93), Expect = 0.016
Identities = 26/66 (39%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = -1
Query: 346 TQGGPAWAEAGSASAPCPSPQSCDGHEDPTPWTPRTPQE-------RPPQPPPRRARSPG 188
T+ PA AEA SA A P PTP TP TP E P PPP RS
Sbjct: 186 TEPAPAGAEASSAPAATSGPAEAPAASMPTPLTPATPTEPASGTVTAPLAPPPTLPRSDA 245
Query: 187 EGKWAP 170
AP
Sbjct: 246 GAMAAP 251
