Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000876A_C01 KCC000876A_c01
(1112 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19954|RR30_SPIOL Plastid-specific 30S ribosomal protein 1, c... 131 3e-29
gb|AAA34039.1| ribosomal protein 30S subunit 131 3e-29
ref|NP_568447.1| expressed protein [Arabidopsis thaliana] gi|138... 125 1e-27
gb|AAP21401.1| putative ribosomal protein [Oryza sativa (japonic... 122 9e-27
prf||1613445A ribosomal protein CS-S5 108 1e-22
>sp|P19954|RR30_SPIOL Plastid-specific 30S ribosomal protein 1, chloroplast precursor
(CS-S5) (CS5) (S22) (Ribosomal protein 1) (PSRP-1)
gi|279640|pir||R3SPS5 ribosomal protein CS-S22
precursor, chloroplast - spinach
gi|12316|emb|CAA41960.1| chloroplast ribosomal protein
S22 [Spinacia oleracea] gi|18031|emb|CAA33403.1| spinach
S22 r-protein [Spinacia oleracea]
Length = 302
Score = 131 bits (329), Expect(2) = 3e-29
Identities = 87/234 (37%), Positives = 132/234 (56%), Gaps = 4/234 (1%)
Frame = +2
Query: 188 GPNMAVVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANF 367
G N+AV + + +R+ V S +V++I+QGR L V+D ++ +VE+KV K+VA
Sbjct: 46 GLNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKH 105
Query: 368 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 547
SH ++EVDV LSARGGD + G K ++ EVT++T R+GV+R E+ +LY++IDLV I
Sbjct: 106 SHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSII 164
Query: 548 RAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF----QEYLKEVKMDTQLFDKEEQLQRQF 715
+ KL+KIK+K G + D E +E L+EV+ E+ F
Sbjct: 165 QRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDD---DF 221
Query: 716 AELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQIVY 877
E V+R+K + P+T+ EA++ LE V H FY FR T + I+Y
Sbjct: 222 IE-------EVVRTKYFDM-PPLTITEAVEQLENVDHDFYAFRNEETGDINILY 267
Score = 20.8 bits (42), Expect(2) = 3e-29
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +3
Query: 885 ESGGYGVIVPQ 917
+ GGYG+I+P+
Sbjct: 270 KEGGYGLIIPK 280
>gb|AAA34039.1| ribosomal protein 30S subunit
Length = 302
Score = 131 bits (329), Expect(2) = 3e-29
Identities = 87/234 (37%), Positives = 132/234 (56%), Gaps = 4/234 (1%)
Frame = +2
Query: 188 GPNMAVVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANF 367
G N+AV + + +R+ V S +V++I+QGR L V+D ++ +VE+KV K+VA
Sbjct: 46 GLNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKH 105
Query: 368 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 547
SH ++EVDV LSARGGD + G K ++ EVT++T R+GV+R E+ +LY++IDLV I
Sbjct: 106 SHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSII 164
Query: 548 RAKLQKIKEKAISRGAWPGRAGPKEDVDEEDF----QEYLKEVKMDTQLFDKEEQLQRQF 715
+ KL+KIK+K G + D E +E L+EV+ E+ F
Sbjct: 165 QRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDD---DF 221
Query: 716 AELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQIVY 877
E V+R+K + P+T+ EA++ LE V H FY FR T + I+Y
Sbjct: 222 IE-------EVVRTKYFDM-PPLTITEAVEQLENVDHDFYAFRNEETGDINILY 267
Score = 20.8 bits (42), Expect(2) = 3e-29
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +3
Query: 885 ESGGYGVIVPQ 917
+ GGYG+I+P+
Sbjct: 270 KEGGYGLIIPK 280
>ref|NP_568447.1| expressed protein [Arabidopsis thaliana]
gi|13877771|gb|AAK43963.1|AF370148_1 unknown protein
[Arabidopsis thaliana] gi|29824163|gb|AAP04042.1|
unknown protein [Arabidopsis thaliana]
Length = 308
Score = 125 bits (315), Expect(2) = 1e-27
Identities = 82/218 (37%), Positives = 125/218 (56%)
Frame = +2
Query: 224 RSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLKEVDVTLS 403
RS L V+ S +V++IIQG+ L +++ IK +VEEKV K+V SH ++EVDV LS
Sbjct: 66 RSSLAVK-MSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLS 124
Query: 404 ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAI 583
RGG+ G G + ++ EVT++T ++GVVR E+ +YA IDLV I+ KL+KIKEK
Sbjct: 125 VRGGEFG-KGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDS 183
Query: 584 SRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAELNRIYPANVMRSKT 763
G + + V E + +++V+ T EE+ + + ++R+KT
Sbjct: 184 DHGRHM-KGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIK-------EIVRTKT 235
Query: 764 VVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQIVY 877
+ P+TV EA++ LE V H FY F+ T + IVY
Sbjct: 236 FEM-PPLTVAEAVEQLELVSHDFYGFQNEETGEINIVY 272
Score = 20.8 bits (42), Expect(2) = 1e-27
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +3
Query: 885 ESGGYGVIVPQ 917
+ GGYG+I+P+
Sbjct: 275 KEGGYGLIIPK 285
>gb|AAP21401.1| putative ribosomal protein [Oryza sativa (japonica cultivar-group)]
Length = 309
Score = 122 bits (307), Expect = 9e-27
Identities = 80/232 (34%), Positives = 126/232 (53%), Gaps = 7/232 (3%)
Frame = +2
Query: 203 VVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANFSHTLK 382
++A RS V S +VR+I+QGR + + + +K ++EEK +AVA S +K
Sbjct: 57 LLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVK 116
Query: 383 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 562
EVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL I+ KL+
Sbjct: 117 EVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLR 175
Query: 563 KIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFAE 721
KIKEK G P D +++D Q LK+++ D++ L +
Sbjct: 176 KIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTK---- 231
Query: 722 LNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQIVY 877
V+R+K V P++VEEA++ L V H+FY FR+ T + ++Y
Sbjct: 232 --------VVRTK-VFEMPPLSVEEAMEQLVNVDHNFYAFRDEKTGEMNVLY 274
>prf||1613445A ribosomal protein CS-S5
Length = 321
Score = 108 bits (271), Expect = 1e-22
Identities = 59/135 (43%), Positives = 91/135 (66%)
Frame = +2
Query: 188 GPNMAVVATRPARSGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKAVANF 367
G N+AV + + +R+ V S +V++I+QGR L V+D ++ +VE+KV K+VA
Sbjct: 46 GLNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKH 105
Query: 368 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 547
SH ++EVDV LS+RGGD + G K ++ EVT++T R+GV+R E+ +LY++IDLV I
Sbjct: 106 SHLVREVDVRLSSRGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSII 164
Query: 548 RAKLQKIKEKAISRG 592
+ KL+KIK+K G
Sbjct: 165 QRKLRKIKDKVSDHG 179
