Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000874A_C01 KCC000874A_c01
(511 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178476.1| nonsense-mediated mRNA decay protein -related [... 146 1e-34
gb|AAL07089.1| putative nonsense-mediated mRNA decay protein [Ar... 142 3e-33
ref|NP_598548.1| expressed sequence C87860 [Mus musculus] gi|132... 138 4e-32
ref|NP_477332.1| Nonsense-mediated mRNA 3 CG3460-PA [Drosophila ... 138 4e-32
ref|XP_227253.2| similar to expressed sequence C87860 [Rattus no... 138 5e-32
>ref|NP_178476.1| nonsense-mediated mRNA decay protein -related [Arabidopsis
thaliana] gi|25350038|pir||F84452 probable
nonsense-mediated mRNA decay protein [imported] -
Arabidopsis thaliana gi|4582430|gb|AAD24816.1| putative
nonsense-mediated mRNA decay protein [Arabidopsis
thaliana] gi|20466624|gb|AAM20629.1| putative
nonsense-mediated mRNA decay protein [Arabidopsis
thaliana] gi|22136400|gb|AAM91278.1| putative
nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
Length = 516
Score = 146 bits (369), Expect = 1e-34
Identities = 65/101 (64%), Positives = 78/101 (76%)
Frame = +2
Query: 209 FQPQQTQGYVLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQCTILWCKECGRYLQPP 388
F QQT G VLCC CG + PN +NMCVNC+RS+VDITEG+QK I +C EC YLQPP
Sbjct: 10 FNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCYLQPP 69
Query: 389 KHWVTAELESKELLTFCIKKIKGLSKVKLVDAGFIWTEPHS 511
K W+ + ESKELLTFCIK++K L+KVKL +A F+WTEPHS
Sbjct: 70 KTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHS 110
>gb|AAL07089.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
Length = 516
Score = 142 bits (357), Expect = 3e-33
Identities = 64/101 (63%), Positives = 77/101 (75%)
Frame = +2
Query: 209 FQPQQTQGYVLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQCTILWCKECGRYLQPP 388
F QQT G VLCC CG + PN +NM VNC+RS+VDITEG+QK I +C EC YLQPP
Sbjct: 10 FNVQQTIGSVLCCKCGVPMAPNAANMRVNCLRSEVDITEGLQKSIQIFYCPECTCYLQPP 69
Query: 389 KHWVTAELESKELLTFCIKKIKGLSKVKLVDAGFIWTEPHS 511
K W+ + ESKELLTFCIK++K L+KVKL +A F+WTEPHS
Sbjct: 70 KTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHS 110
>ref|NP_598548.1| expressed sequence C87860 [Mus musculus] gi|13277951|gb|AAH03842.1|
Expressed sequence C87860 [Mus musculus]
gi|26353722|dbj|BAC40491.1| unnamed protein product [Mus
musculus]
Length = 503
Score = 138 bits (348), Expect = 4e-32
Identities = 60/99 (60%), Positives = 78/99 (78%), Gaps = 1/99 (1%)
Frame = +2
Query: 218 QQTQGYVLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQCTILWCKECGRYLQPPKHW 397
+ + G++LCC CG I PNP+N+CV C+RS+VDI++G+ KQ +I +CK+C RY QPP W
Sbjct: 9 EHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASW 68
Query: 398 VTAELESKELLTFCIKKIKG-LSKVKLVDAGFIWTEPHS 511
V LES+ELL C+KKIK LSKV+LVDAGF+WTEPHS
Sbjct: 69 VQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHS 107
>ref|NP_477332.1| Nonsense-mediated mRNA 3 CG3460-PA [Drosophila melanogaster]
gi|2894111|emb|CAA15695.1| EG:152A3.1 [Drosophila
melanogaster] gi|7290283|gb|AAF45744.1| CG3460-PA
[Drosophila melanogaster] gi|16197917|gb|AAL13723.1|
GM14705p [Drosophila melanogaster]
Length = 521
Score = 138 bits (348), Expect = 4e-32
Identities = 61/105 (58%), Positives = 75/105 (71%)
Frame = +2
Query: 197 GQATFQPQQTQGYVLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQCTILWCKECGRY 376
G A + + +LCC CG I PNP+NMCV C+R+ VDITE I KQ + +C+ C RY
Sbjct: 12 GAADGKGAGSNAVILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERY 71
Query: 377 LQPPKHWVTAELESKELLTFCIKKIKGLSKVKLVDAGFIWTEPHS 511
LQPP W+ A LES+ELL C+KK+KGL +VKLVDAGFIWTE HS
Sbjct: 72 LQPPNEWIQAALESRELLAICLKKLKGLKEVKLVDAGFIWTEQHS 116
>ref|XP_227253.2| similar to expressed sequence C87860 [Rattus norvegicus]
Length = 476
Score = 138 bits (347), Expect = 5e-32
Identities = 60/98 (61%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Frame = +2
Query: 221 QTQGYVLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQCTILWCKECGRYLQPPKHWV 400
++ G++LCC CG I PNP+N+CV C+RS+VDI++G+ KQ +I +CK+C RY QPP WV
Sbjct: 10 RSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWV 69
Query: 401 TAELESKELLTFCIKKIKG-LSKVKLVDAGFIWTEPHS 511
LES+ELL C+KKIK LSKV+LVDAGF+WTEPHS
Sbjct: 70 QCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHS 107
