Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000873A_C01 KCC000873A_c01
(523 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL14422.1|AF188480_4 ICP4 [Macropodid herpesvirus 1] 54 1e-06
emb|CAB98235.2| related to trfA protein [Neurospora crassa] 53 2e-06
pir||T51071 related to trfA protein [imported] - Neurospora crassa 53 2e-06
gb|AAH56140.1| Unknown (protein for IMAGE:3815401) [Danio rerio] 52 5e-06
ref|NP_080130.1| CBF1 interacting corepressor [Mus musculus] gi|... 51 8e-06
>gb|AAL14422.1|AF188480_4 ICP4 [Macropodid herpesvirus 1]
Length = 1234
Score = 53.9 bits (128), Expect = 1e-06
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +3
Query: 279 RRGGGSRRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRRESERER 458
RR S R S S SSS SS SSSSS SSS+S SD E RD G R ++ + ++R
Sbjct: 180 RRASASSRSSSASSSSSSSSSSSSSSSSSSSSASSSDEEEAERDDGKRRRRKKKRTHQKR 239
Query: 459 EREERPAGDRPS 494
RE + + P+
Sbjct: 240 AREGDSSPEPPT 251
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/71 (33%), Positives = 37/71 (51%)
Frame = +3
Query: 300 RKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRRESEREREREERPA 479
+++RR+ + S S S+ SSSSS SSSSS S S + +R + +R R +++R
Sbjct: 177 QRKRRASASSRSSSASSSSSSSSSSSSSSSSSSSSASSSDEEEAERDDGKRRRRKKKRTH 236
Query: 480 GDRPSGADKQP 512
R D P
Sbjct: 237 QKRAREGDSSP 247
Score = 34.3 bits (77), Expect = 1.0
Identities = 23/71 (32%), Positives = 29/71 (40%)
Frame = +3
Query: 309 RRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRRESEREREREERPAGDR 488
R +P S+ S SSS SSSSS S S S E E ER+ +R +
Sbjct: 173 RPTPQRKRRASASSRSSSASSSSSSSSSSSSSSSSSSSSASSSDEEEAERDDGKRRRRKK 232
Query: 489 PSGADKQPAEG 521
K+ EG
Sbjct: 233 KRTHQKRAREG 243
>emb|CAB98235.2| related to trfA protein [Neurospora crassa]
Length = 715
Score = 53.1 bits (126), Expect = 2e-06
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Frame = +3
Query: 324 PSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDR---------RESEREREREERP 476
PSSS S SSSSS SSSSS S S R+R DR DR R+ ER++ER++
Sbjct: 571 PSSSTHSSSSSSSSSSSSSSSSSRERDRERERDRDRDREKERGRENERDRERDKERDKDT 630
Query: 477 AGDRPSGA 500
GDR SG+
Sbjct: 631 PGDRRSGS 638
>pir||T51071 related to trfA protein [imported] - Neurospora crassa
Length = 728
Score = 53.1 bits (126), Expect = 2e-06
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Frame = +3
Query: 324 PSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDR---------RESEREREREERP 476
PSSS S SSSSS SSSSS S S R+R DR DR R+ ER++ER++
Sbjct: 584 PSSSTHSSSSSSSSSSSSSSSSSRERDRERERDRDRDREKERGRENERDRERDKERDKDT 643
Query: 477 AGDRPSGA 500
GDR SG+
Sbjct: 644 PGDRRSGS 651
>gb|AAH56140.1| Unknown (protein for IMAGE:3815401) [Danio rerio]
Length = 678
Score = 52.0 bits (123), Expect = 5e-06
Identities = 34/88 (38%), Positives = 44/88 (49%), Gaps = 6/88 (6%)
Frame = +3
Query: 261 SDDEDGRRGGGSRRKERRSPSPSSSGSS------GSSSSSGSSSSSDSDSEPPRRDRGSD 422
+DD GR +++ + RS S SSS SS GSSSSS SSSS S S R
Sbjct: 543 ADDARGRAKVRAKKSKSRSSSSSSSSSSSSSSSSGSSSSSSGSSSSSSGSSSSSSSRSRS 602
Query: 423 RGPDRRESEREREREERPAGDRPSGADK 506
RG DR + +R R R SG+++
Sbjct: 603 RGRDRENRDHKRRRRPSDRERRGSGSER 630
Score = 48.1 bits (113), Expect = 7e-05
Identities = 30/82 (36%), Positives = 38/82 (45%)
Frame = +3
Query: 264 DDEDGRRGGGSRRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRRE 443
++ D RG R ++ SSS SS SSSSS SS SS S S GS R
Sbjct: 541 EEADDARGRAKVRAKKSKSRSSSSSSSSSSSSSSSSGSSSSSSGSSSSSSGSSSSSSSRS 600
Query: 444 SEREREREERPAGDRPSGADKQ 509
R R+RE R R +D++
Sbjct: 601 RSRGRDRENRDHKRRRRPSDRE 622
Score = 42.4 bits (98), Expect = 0.004
Identities = 36/93 (38%), Positives = 41/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 207 ARTRRCV*ARKGVCMAPRSDDEDGRRGGGSRRKERRSPSPSSSGSSGSSSSSGSSSSSDS 386
AR R V A+K +S S S SSSGSS SSS S SSSSS S
Sbjct: 546 ARGRAKVRAKKS-----KSRSSSSSSSSSSSSSSSSGSSSSSSGSSSSSSGSSSSSSSRS 600
Query: 387 DSEPPRRDRGSDR-GPDRRESEREREREERPAG 482
R RG DR D + R +RE R +G
Sbjct: 601 ------RSRGRDRENRDHKRRRRPSDRERRGSG 627
Score = 35.8 bits (81), Expect = 0.34
Identities = 24/72 (33%), Positives = 36/72 (49%)
Frame = +3
Query: 258 RSDDEDGRRGGGSRRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDR 437
R + + RR S R+ R S S + SS SS G S D S+P R+ S+ R
Sbjct: 607 RENRDHKRRRRPSDRERRGSGSERAHKSSKSSGREGKGSK-DKTSKPDRKRTSSEGRRSR 665
Query: 438 RESEREREREER 473
E +R+ +R++R
Sbjct: 666 SERDRKSDRKDR 677
Score = 35.4 bits (80), Expect = 0.45
Identities = 27/82 (32%), Positives = 32/82 (38%)
Frame = +3
Query: 261 SDDEDGRRGGGSRRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRR 440
S GS S S SS SS SSS S S + + RR R SDR +RR
Sbjct: 567 SSSSSSSSSSGSSSSSSGSSSSSSGSSSSSSSRSRSRGRDRENRDHKRRRRPSDR--ERR 624
Query: 441 ESEREREREERPAGDRPSGADK 506
S ER + + R K
Sbjct: 625 GSGSERAHKSSKSSGREGKGSK 646
>ref|NP_080130.1| CBF1 interacting corepressor [Mus musculus]
gi|12839262|dbj|BAB24488.1| unnamed protein product [Mus
musculus]
Length = 450
Score = 51.2 bits (121), Expect = 8e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +3
Query: 294 SRRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRRESEREREREER 473
++ K+R++ SPSSS SS SSSSS SS+SS S S D S+ D +E +RE+E+ ++
Sbjct: 252 NKHKKRKNKSPSSSSSSSSSSSSSSSTSSSSSSSSETSDSSSE--SDNKEKKREKEKRKK 309
Score = 51.2 bits (121), Expect = 8e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 297 RRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRGSDRGPDRRESEREREREERP 476
++++ +SPS SSS SS SSSSS +SSSS S SE SD +RE E+ +++++
Sbjct: 255 KKRKNKSPSSSSSSSSSSSSSSSTSSSSSSSSETSDSSSESDNKEKKREKEKRKKKKKTK 314
Query: 477 AGDRPSGADKQ 509
+ S K+
Sbjct: 315 CSESKSSDCKE 325
Score = 31.2 bits (69), Expect = 8.5
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
Frame = +3
Query: 279 RRGGGSRRKERRSPSPSSSGSSGSSSSSGSSSSSDSDSEPPRRDRG-----SDRGPDRRE 443
++ ++K ++S + + S SSS SSSSS S S SD +
Sbjct: 238 KKSDKKKKKLQKSKNKHKKRKNKSPSSSSSSSSSSSSSSSTSSSSSSSSETSDSSSESDN 297
Query: 444 SEREREREER 473
E++RE+E+R
Sbjct: 298 KEKKREKEKR 307
