KCC000868A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000868A_C01 KCC000868A_c01
aaggcattattatattaagCGCGATGAGCTTTTTACCCGTGCTATGTTACAATTCACATT
CGACATCGCGTTCTGGAGAATCGACCCCGCATTTAGGGTCGTCGGTACACAGCTATGTAC
ACGATTGCAAACAACTGCAATCAAGGTGAAGTAGGACGAACGGTCCTTGAACGCCGTTCC
CAGCTTCCGATTATTTCGCTCGCTTGCGCAGTCGACCCTACGCTGCAAGTACTATGCCTT
ACCGCACCAAAATTGGACTTTCCTTGTTGGCAGACGGGCCAGCGGGCGTGATGGGCGATT
CCGCGGCCGGTCCCAGACGGCCAGCAGACGGCTCGCACGCTTCCGTGTCCCGACCGGACG
CGAGGGAGCTTCCTCGGTCCCGGTAGCTGACCTGGAACCAGCTACCCAACCGGTGTACGA
ACAAATGCAAGTGTGGCAGCGGGGCGGCCGCCGCCGGTGTGGCTATAAAAGCTCCCGGCC
CCGCCCCGTTCCCTCCAACCGCACGCACACACCCTTTTCCAGCATTCCAGCCACCCGAAC
AAACGGTCGTGGACCTCTTCTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000868A_C01 KCC000868A_c01
         (563 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC98150.1| mKIAA1375 protein [Mus musculus]                       39  0.049
gb|AAD53115.1|AF176514_1 E2F1-inducible protein [Mus musculus]         39  0.049
gb|AAH02261.1| Pdcd6ip protein [Mus musculus]                          39  0.049
ref|NP_035182.1| programmed cell death 6 interacting protein [Mu...    39  0.049
gb|AAH26823.1| Programmed cell death 6 interacting protein [Mus ...    39  0.049

>dbj|BAC98150.1| mKIAA1375 protein [Mus musculus]
          Length = 909

 Score = 38.9 bits (89), Expect = 0.049
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
 Frame = +3

Query: 174  PFPASDYFARLRSRPYAASTMPY--RTKIGLSLLADGPAGVMGDSAAGPRRPADGSHASV 347
            P PA       + +P A    P     ++  +  A  PAGV   SAA P+ P      S 
Sbjct: 780  PTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTASAAPPQTP-----GSA 834

Query: 348  SRPDARELPRSR*LTWNQLPNRCTNKCKCGSGAAAAG--------VAIKAPGPAPFP-PT 500
              P A+  P     T+   P  C      G    A G        V  ++PG AP+P P 
Sbjct: 835  PPPQAQGPPYP---TYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 891

Query: 501  ARTHPFPAFQPPEQT 545
              T+PFP  QPP+Q+
Sbjct: 892  QPTYPFP--QPPQQS 904

>gb|AAD53115.1|AF176514_1 E2F1-inducible protein [Mus musculus]
          Length = 199

 Score = 38.9 bits (89), Expect = 0.049
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
 Frame = +3

Query: 174 PFPASDYFARLRSRPYAASTMPY--RTKIGLSLLADGPAGVMGDSAAGPRRPADGSHASV 347
           P PA       + +P A    P     ++  +  A  PAGV   SAA P+ P      S 
Sbjct: 70  PTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTASAAPPQTP-----GSA 124

Query: 348 SRPDARELPRSR*LTWNQLPNRCTNKCKCGSGAAAAG--------VAIKAPGPAPFP-PT 500
             P A+  P     T+   P  C      G    A G        V  ++PG AP+P P 
Sbjct: 125 PPPQAQGPPYP---TYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 181

Query: 501 ARTHPFPAFQPPEQT 545
             T+PFP  QPP+Q+
Sbjct: 182 QPTYPFP--QPPQQS 194

>gb|AAH02261.1| Pdcd6ip protein [Mus musculus]
          Length = 236

 Score = 38.9 bits (89), Expect = 0.049
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
 Frame = +3

Query: 174 PFPASDYFARLRSRPYAASTMPY--RTKIGLSLLADGPAGVMGDSAAGPRRPADGSHASV 347
           P PA       + +P A    P     ++  +  A  PAGV   SAA P+ P      S 
Sbjct: 107 PTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTASAAPPQTP-----GSA 161

Query: 348 SRPDARELPRSR*LTWNQLPNRCTNKCKCGSGAAAAG--------VAIKAPGPAPFP-PT 500
             P A+  P     T+   P  C      G    A G        V  ++PG AP+P P 
Sbjct: 162 PPPQAQGPPYP---TYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 218

Query: 501 ARTHPFPAFQPPEQT 545
             T+PFP  QPP+Q+
Sbjct: 219 QPTYPFP--QPPQQS 231

>ref|NP_035182.1| programmed cell death 6 interacting protein [Mus musculus]
            gi|31076858|sp|Q9WU78|PD6I_MOUSE Programmed cell death 6
            interacting protein (ALG-2 interacting protein X) (ALG-2
            interacting protein 1) (E2F1-inducible protein) (Eig2)
            gi|3550456|emb|CAA06329.1| Alix [Mus musculus]
          Length = 869

 Score = 38.9 bits (89), Expect = 0.049
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
 Frame = +3

Query: 174  PFPASDYFARLRSRPYAASTMPY--RTKIGLSLLADGPAGVMGDSAAGPRRPADGSHASV 347
            P PA       + +P A    P     ++  +  A  PAGV   SAA P+ P      S 
Sbjct: 740  PTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTASAAPPQTP-----GSA 794

Query: 348  SRPDARELPRSR*LTWNQLPNRCTNKCKCGSGAAAAG--------VAIKAPGPAPFP-PT 500
              P A+  P     T+   P  C      G    A G        V  ++PG AP+P P 
Sbjct: 795  PPPQAQGPPYP---TYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 851

Query: 501  ARTHPFPAFQPPEQT 545
              T+PFP  QPP+Q+
Sbjct: 852  QPTYPFP--QPPQQS 864

>gb|AAH26823.1| Programmed cell death 6 interacting protein [Mus musculus]
          Length = 869

 Score = 38.9 bits (89), Expect = 0.049
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
 Frame = +3

Query: 174  PFPASDYFARLRSRPYAASTMPY--RTKIGLSLLADGPAGVMGDSAAGPRRPADGSHASV 347
            P PA       + +P A    P     ++  +  A  PAGV   SAA P+ P      S 
Sbjct: 740  PTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTASAAPPQTP-----GSA 794

Query: 348  SRPDARELPRSR*LTWNQLPNRCTNKCKCGSGAAAAG--------VAIKAPGPAPFP-PT 500
              P A+  P     T+   P  C      G    A G        V  ++PG AP+P P 
Sbjct: 795  PPPQAQGPPYP---TYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 851

Query: 501  ARTHPFPAFQPPEQT 545
              T+PFP  QPP+Q+
Sbjct: 852  QPTYPFP--QPPQQS 864



EST assemble image


clone accession position
1 LCL061b11_r AV629570 1 517
2 CL80b04_r AV397318 20 563
3 HCL052f05_r AV642484 20 475




Chlamydomonas reinhardtii
Kazusa DNA Research Institute