KCC000860A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000860A_C01 KCC000860A_c01
cgatgtcgGCTCCGTTAGCACAGAGTAGCTGTTGAGCTGCAGACGCTCGGACGAACACAG
CTGCTTCGAGCTTTTCTGGTTCACGCAACTCATAGCATCAGAGCTTACTTCTGAGTCACG
GCTCAGATAAACAGTTTGGCCACAGGCCTCAATTATAAGGAAACATACGACTCCGACGAC
TCCGCTCACCGATATCTCCGGACTCGATGATTGCGTAGTCTGACTATCATCAATATGTCG
CTTCTACAGAGGGCGCTTTGAGGCCCTCGCAGAGGCGCATGGCCCAAGCAGGACAGGGTT
CAGCGTTATACTTATAGCCCAGCATTTGGCGCCGAGTTTTCCTAAGCAAAACTCACAATG
CCGGTCTTCGGGCTCACAGCGGTCGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000860A_C01 KCC000860A_c01
         (387 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00041525.1| hypothetical protein [Xylella fastidiosa Ann-1]     32  1.7
ref|ZP_00038776.1| hypothetical protein [Xylella fastidiosa Dixon]     32  1.7
ref|NP_046713.1| ribunucleotide reductase large subunit [Bacteri...    32  2.8
gb|AAB92484.1| ribonucleotide reductase homolog [Bacillus subtilis]    32  2.8
ref|NP_389887.1| similar to ribonucleoside-diphosphate reductase...    32  2.8

>ref|ZP_00041525.1| hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 184

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/32 (46%), Positives = 20/32 (61%)
 Frame = -1

Query: 363 RHCEFCLGKLGAKCWAISITLNPVLLGPCASA 268
           RHC F +  +  K WAI++ L+ VLL P A A
Sbjct: 7   RHCSFGIPIMHFKYWAIAVALSTVLLTPQAKA 38

>ref|ZP_00038776.1| hypothetical protein [Xylella fastidiosa Dixon]
          Length = 184

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/32 (46%), Positives = 20/32 (61%)
 Frame = -1

Query: 363 RHCEFCLGKLGAKCWAISITLNPVLLGPCASA 268
           RHC F +  +  K WAI++ L+ VLL P A A
Sbjct: 7   RHCSFGIPIMHFKYWAIAVALSTVLLTPQAKA 38

>ref|NP_046713.1| ribunucleotide reductase large subunit [Bacteriophage SPBc2]
           gi|7475802|pir||T12925 ribunucleotide reductase large
           chain - Bacillus subtilis phage SPBc2
           gi|3025639|gb|AAC13134.1| ribunucleotide reductase large
           subunit [Bacteriophage SPBc2]
           gi|32468777|emb|CAB13898.2| yosN [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 1084

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/85 (23%), Positives = 41/85 (47%), Gaps = 8/85 (9%)
 Frame = -1

Query: 231 DDSQTTQSSSPEISVSGVVGVVCFLIIEACGQTVYLSRDSE--------VSSDAMSCVNQ 76
           D   TTQ     +  +G+V   C  ++++   +VY   D E         +  +M+ VN 
Sbjct: 744 DVYDTTQEDYHSLIFNGIVTGNCSEVLQSSQVSVYTDYDKEDEIGLDISCNLGSMNIVNV 803

Query: 75  KSSKQLCSSERLQLNSYSVLTEPTS 1
            S++ + S+ R+ ++S + +T  T+
Sbjct: 804 MSNQSIASTVRIAIDSLTTVTRKTN 828

>gb|AAB92484.1| ribonucleotide reductase homolog [Bacillus subtilis]
          Length = 661

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/85 (23%), Positives = 41/85 (47%), Gaps = 8/85 (9%)
 Frame = -1

Query: 231 DDSQTTQSSSPEISVSGVVGVVCFLIIEACGQTVYLSRDSE--------VSSDAMSCVNQ 76
           D   TTQ     +  +G+V   C  ++++   +VY   D E         +  +M+ VN 
Sbjct: 321 DVYDTTQEDYHSLIFNGIVTGNCSEVLQSSQVSVYTDYDKEDEIGLDISCNLGSMNIVNV 380

Query: 75  KSSKQLCSSERLQLNSYSVLTEPTS 1
            S++ + S+ R+ ++S + +T  T+
Sbjct: 381 MSNQSIASTVRIAIDSLTTVTRKTN 405

>ref|NP_389887.1| similar to ribonucleoside-diphosphate reductase (alpha subunit)
           [Bacillus subtilis] gi|7475800|pir||A69927
           ribonucleoside-diphosphate reductase (alph) homolog yosO
           - Bacillus subtilis
          Length = 786

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/85 (23%), Positives = 41/85 (47%), Gaps = 8/85 (9%)
 Frame = -1

Query: 231 DDSQTTQSSSPEISVSGVVGVVCFLIIEACGQTVYLSRDSE--------VSSDAMSCVNQ 76
           D   TTQ     +  +G+V   C  ++++   +VY   D E         +  +M+ VN 
Sbjct: 446 DVYDTTQEDYHSLIFNGIVTGNCSEVLQSSQVSVYTDYDKEDEIGLDISCNLGSMNIVNV 505

Query: 75  KSSKQLCSSERLQLNSYSVLTEPTS 1
            S++ + S+ R+ ++S + +T  T+
Sbjct: 506 MSNQSIASTVRIAIDSLTTVTRKTN 530



EST assemble image


clone accession position
1 CL78h07_r AV397208 1 381
2 HCL032g06_r AV641390 9 387




Chlamydomonas reinhardtii
Kazusa DNA Research Institute