Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000855A_C01 KCC000855A_c01
(884 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07933 polyadenylate-binding protein RB47 precursor, chloro... 87 4e-16
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir... 56 9e-07
sp|Q9H361|PAB3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-bi... 55 2e-06
ref|NP_112241.1| poly(A) binding protein, cytoplasmic 3; poly(A)... 55 2e-06
emb|CAB66834.1| hypothetical protein [Homo sapiens] 55 2e-06
>pir||T07933 polyadenylate-binding protein RB47 precursor, chloroplast -
Chlamydomonas reinhardtii gi|2935338|gb|AAC39368.1|
poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 87.0 bits (214), Expect = 4e-16
Identities = 50/69 (72%), Positives = 52/69 (74%)
Frame = -2
Query: 883 KMMIWRAPVPAGVLSCSPT*LSRSAGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQH 704
KMMI P V P + GMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQH
Sbjct: 556 KMMIGERLYPQ-VAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQH 614
Query: 703 DVIAEENKA 677
+VIAEENKA
Sbjct: 615 NVIAEENKA 623
>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
Length = 3326
Score = 55.8 bits (133), Expect = 9e-07
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Frame = +1
Query: 439 SPPVPSTARRPSTPPTSAAASRPRQRQLPLRPQLGAAFTAARSS*HCSHTASPA-PMLPA 615
+PP P+ P+ P AA + P P P AA A + + A+PA P PA
Sbjct: 2852 APPAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPA 2911
Query: 616 AQAAPARAGATSPHKRAGSFKPCSPRQSRRAA*AQRWPRPPWTPAPRATPEASEARRCPS 795
A AAPA A + + P + + A A P P PA A P A A P+
Sbjct: 2912 APAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPA 2971
Query: 796 PAACQLIL 819
PAA +++
Sbjct: 2972 PAAVPVVV 2979
Score = 50.4 bits (119), Expect = 4e-05
Identities = 45/142 (31%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Frame = +1
Query: 409 HPAKRQLLTPSPPVPS-----TARRPSTPPTSAAA-SRPRQRQLPLRPQLGAAFTAARSS 570
HP + TP+ P + + P+ PP +A +RP P P + AA A+
Sbjct: 2796 HPPGPETPTPTSPTANPHATTASATPAPPPVAATGPTRPTSPATPT-PTVAAAGRASAPP 2854
Query: 571 *HCSHTASPAPMLPAAQAAPAR----AGATSPHKRAGSFKPCSPRQSRRAA*AQRWPRPP 738
+ A AP PAA AAPA A +P A P +P A A P P
Sbjct: 2855 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPA-APAAPAAP 2913
Query: 739 WTPAPRATPEASEARRCPSPAA 804
PA A P A A P+PAA
Sbjct: 2914 AAPAAPAAPAAPAAPAAPAPAA 2935
Score = 42.0 bits (97), Expect = 0.014
Identities = 58/183 (31%), Positives = 64/183 (34%), Gaps = 49/183 (26%)
Frame = +1
Query: 397 PSRRHPAKRQLLTPSPP-VPSTARRPSTPPTSAAASRPRQ--------RQLPLRP----- 534
P R P R PS P V S ARRP PP SA PR LP P
Sbjct: 2643 PDRSVPPPRPAPRPSEPAVQSRARRPDAPPQSARPRTPRDDPGPPAAPSTLPPSPPPPAP 2702
Query: 535 ---------------QLGAAFTAARSS*HCSHTASP----APMLPAAQAAPARAGATSPH 657
+LG TAA S P AP P APA + P
Sbjct: 2703 HPPDPPPPDPSPRPNELGGGETAAAPS--APDPPPPQTVRAPERPRDDRAPAPGRVSLPR 2760
Query: 658 K--RAGSFKPCSP--RQSRRAA---------*AQRWPRPPWTP---APRATPEASEARRC 789
+ R G P SP R RRAA A P P TP +P A P A+ A
Sbjct: 2761 RASRQGRPAPSSPLQRPRRRAARPAVGSLTNLADPHPPGPETPTPTSPTANPHATTASAT 2820
Query: 790 PSP 798
P+P
Sbjct: 2821 PAP 2823
Score = 40.8 bits (94), Expect = 0.030
Identities = 54/201 (26%), Positives = 67/201 (32%), Gaps = 16/201 (7%)
Frame = +2
Query: 110 LVSP-GSPPRLIPLSASA---PHWTFSTSYCQNSCAQLHPSPKRHPSFCA*HATASHTAQ 277
+VSP P + PL S P WT +S S + HP P+ +A H A
Sbjct: 333 VVSPLPRPNQHYPLGFSKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRT--RRSARHAAT 390
Query: 278 QRDAAPSANPDTCRVQGLAPFGTHFLQPDGDWPDTTAAAALRAATP----------PNAS 427
+ T G P P P T A A P P +
Sbjct: 391 PFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTA 450
Query: 428 SSHPHHPSRAPPGDLPRHPLLLLLRARVNASCRSAPSSARPSRRPEAASTAPTP--RPPR 601
SS P P+ PP R P + R + RP P A PTP RPP
Sbjct: 451 SSEPPTPAGRPPTPAGRPP---------TPAGRPPTPAGRP---PTPAGRPPTPAGRPPT 498
Query: 602 PCCRRPKQRRRAPAPPARTSA 664
P R P R P P T++
Sbjct: 499 PAGRPPTPAGRPPTPANPTAS 519
Score = 37.7 bits (86), Expect = 0.26
Identities = 36/113 (31%), Positives = 45/113 (38%), Gaps = 1/113 (0%)
Frame = +1
Query: 439 SPPVPSTARRPSTPPTSAAASRPRQRQLPLRPQLGAAFTAARSS*HCSHTASPAPMLPAA 618
+P P+ P+ P AA + P +P P AA A A AP PAA
Sbjct: 2909 APAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAP--------AAPAAPAAPAA 2960
Query: 619 QAAPARAGATSPHKRAGSFKPCSPRQSRRAA*AQRWPRPPWTPA-PRATPEAS 774
AAPA A +P A +P + A P P TPA P TP +S
Sbjct: 2961 PAAPAAPAAPAP--AAVPVVVPAPTATLTAT-TTTSPAPAATPASPVPTPTSS 3010
Score = 35.8 bits (81), Expect = 0.98
Identities = 41/142 (28%), Positives = 50/142 (34%), Gaps = 8/142 (5%)
Frame = +2
Query: 275 QQRDAAPSANPDTCRVQGLAPFGTHFLQPDGDWPDTTAAAALRAATPPNASSSHPHHPSR 454
Q R P A P + R + P D A + L + PP A PH P
Sbjct: 2662 QSRARRPDAPPQSARPR----------TPRDDPGPPAAPSTLPPSPPPPA----PHPPDP 2707
Query: 455 APPGDLPRHPLLLLLRARVNASCRSAPSSARPS--RRPEAASTAPTPRPPRPCCRRPKQR 628
PP PR L A+ SAP P R PE P P R R R
Sbjct: 2708 PPPDPSPRPN---ELGGGETAAAPSAPDPPPPQTVRAPERPRDDRAPAPGRVSLPRRASR 2764
Query: 629 RRAPAP------PARTSAQAAL 676
+ PAP P R +A+ A+
Sbjct: 2765 QGRPAPSSPLQRPRRRAARPAV 2786
Score = 35.0 bits (79), Expect = 1.7
Identities = 54/213 (25%), Positives = 68/213 (31%), Gaps = 1/213 (0%)
Frame = +2
Query: 38 TLQSPGSKQCDCASQRATAKQQKRLVSPGSPPRLIPLSASAPHWTFSTSYCQNSCAQLHP 217
T+++P + D A +R G P PL + A HP
Sbjct: 2738 TVRAPERPRDDRAPAPGRVSLPRRASRQGRPAPSSPLQRPRRRAARPAVGSLTNLADPHP 2797
Query: 218 SPKRHPSFCA*HATASHTAQQRDAAPSANPDTCRVQGLAPFGTHFLQPDGDWPDTTAAAA 397
P+ S TA SA P V P T P P T AAA
Sbjct: 2798 PGPETPT------PTSPTANPHATTASATPAPPPVAATGP--TRPTSPAT--PTPTVAAA 2847
Query: 398 LRAATPP-NASSSHPHHPSRAPPGDLPRHPLLLLLRARVNASCRSAPSSARPSRRPEAAS 574
RA+ PP A+ + P P+ P P A A A +A + AA
Sbjct: 2848 GRASAPPAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAP 2907
Query: 575 TAPTPRPPRPCCRRPKQRRRAPAPPARTSAQAA 673
AP P P APA PA + AA
Sbjct: 2908 AAPA-APAAPAAPAAPAAPAAPAAPAPAAVPAA 2939
Score = 34.7 bits (78), Expect = 2.2
Identities = 31/125 (24%), Positives = 40/125 (31%), Gaps = 2/125 (1%)
Frame = +1
Query: 436 PSPPVPSTARRPSTP--PTSAAASRPRQRQLPLRPQLGAAFTAARSS*HCSHTASPAPML 609
P+P P T P TP PT+A++ P P P A R +PA
Sbjct: 430 PTPGAPPTPGAPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPAGRPPTPAGRPPTPAGRP 489
Query: 610 PAAQAAPARAGATSPHKRAGSFKPCSPRQSRRAA*AQRWPRPPWTPAPRATPEASEARRC 789
P P P P +P S P TP P P S +
Sbjct: 490 PTPAGRPPTPAGRPPTPAGRPPTPANPTASSE----------PPTPNPEGAPAPSSNEQP 539
Query: 790 PSPAA 804
P+ A+
Sbjct: 540 PAAAS 544
Score = 34.3 bits (77), Expect = 2.8
Identities = 58/232 (25%), Positives = 74/232 (31%), Gaps = 50/232 (21%)
Frame = +2
Query: 116 SPGSPPRLIPLSASAPHWTFSTSYCQNSCAQLHPSPKRHPSF-CA*HATASHTAQQRDAA 292
+P +P P + +AP + + A P+P P+ A A A+ A AA
Sbjct: 2900 APAAPAA--PAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAA 2957
Query: 293 PSANPDTCRVQGLAPFGTHFL--QPDGDWPDTTAAAALRAATP----PNASSSHPHHPSR 454
P+A AP + P TT + AATP P +SS P PS+
Sbjct: 2958 PAAPAAPAAPAAPAPAAVPVVVPAPTATLTATTTTSPAPAATPASPVPTPTSSLPTPPSK 3017
Query: 455 ---------------APPGDLPRH----------------PLLLLLRARVNASCRS---- 529
AP GD R P L R V+ S S
Sbjct: 3018 PPAFFQPSLATGGSVAPGGDFRRRAPSRPTAAVPAAPSRPPARRLARPAVSRSTESFALP 3077
Query: 530 --------APSSARPSRRPEAASTAPTPRPPRPCCRRPKQRRRAPAPPARTS 661
P + P E A A P PP P RP A PA S
Sbjct: 3078 PDELARPRTPEAPAPPTETEEAPVAERPAPPEPPQGRPPSPAAPDAGPAAAS 3129
Score = 33.5 bits (75), Expect = 4.8
Identities = 32/113 (28%), Positives = 43/113 (37%), Gaps = 3/113 (2%)
Frame = +1
Query: 433 TPSPPVPSTARRPSTP---PTSAAASRPRQRQLPLRPQLGAAFTAARSS*HCSHTASPAP 603
TP+ P+ A RP TP P + A P P P A R + TAS P
Sbjct: 463 TPAGRPPTPAGRPPTPAGRPPTPAGRPPTPAGRPPTPAGRPPTPAGRPPTPANPTASSEP 522
Query: 604 MLPAAQAAPARAGATSPHKRAGSFKPCSPRQSRRAA*AQRWPRPPWTPAPRAT 762
P + APA + P A + +++A A R +PP P T
Sbjct: 523 PTPNPEGAPAPSSNEQPPAAAS-----TDEATQKALDALRDRQPPEPPCGSLT 570
>sp|Q9H361|PAB3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
gi|20379668|gb|AAH27617.1| Poly(A) binding protein,
cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 55.1 bits (131), Expect = 2e-06
Identities = 29/52 (55%), Positives = 36/52 (68%)
Frame = -2
Query: 832 PT*LSRSAGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHDVIAEENKA 677
PT + GMLLE+DN+ELL +LES E+L SKVDEA+AVL+ H KA
Sbjct: 570 PTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
>ref|NP_112241.1| poly(A) binding protein, cytoplasmic 3; poly(A)-binding
protein-like 3; poly(A)-binding protein, cytoplasmic 3;
testis-specific poly(A)-binding protein (PABP);
testis-specific poly(A)-binding protein 3 [Homo sapiens]
gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific
poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 55.1 bits (131), Expect = 2e-06
Identities = 29/52 (55%), Positives = 36/52 (68%)
Frame = -2
Query: 832 PT*LSRSAGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHDVIAEENKA 677
PT + GMLLE+DN+ELL +LES E+L SKVDEA+AVL+ H KA
Sbjct: 570 PTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
>emb|CAB66834.1| hypothetical protein [Homo sapiens]
Length = 631
Score = 55.1 bits (131), Expect = 2e-06
Identities = 29/52 (55%), Positives = 36/52 (68%)
Frame = -2
Query: 832 PT*LSRSAGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHDVIAEENKA 677
PT + GMLLE+DN+ELL +LES E+L SKVDEA+AVL+ H KA
Sbjct: 570 PTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621
