Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000852A_C01 KCC000852A_c01
(846 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_612211.1| RNA polymerase III subunit RPC8 [Homo sapiens] ... 154 1e-36
dbj|BAB33335.1| KIAA1665 protein [Homo sapiens] 154 1e-36
ref|NP_084505.2| RIKEN cDNA 5031409G22 [Mus musculus] gi|2766296... 154 2e-36
dbj|BAC75582.1| putative DNA-directed RNA polymerase III subunit... 151 1e-35
ref|NP_648490.1| CG7339-PA [Drosophila melanogaster] gi|7294695|... 150 3e-35
>ref|NP_612211.1| RNA polymerase III subunit RPC8 [Homo sapiens]
gi|29428071|sp|Q9Y535|RPC8_HUMAN DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide (RPC8)
gi|5304853|emb|CAB46023.1| dJ347H13.5 (novel protein
similar to yeast DNA-directed RNA Polymerase III 25 kD
Polypeptide) [Homo sapiens] gi|24429623|gb|AAM18217.1|
RNA polymerase III subunit RPC8 [Homo sapiens]
Length = 204
Score = 154 bits (390), Expect = 1e-36
Identities = 71/170 (41%), Positives = 114/170 (66%), Gaps = 5/170 (2%)
Frame = +1
Query: 352 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 531
MF++ ++ D +R+ P + D++ + + ++ +KV+ N+GL + ++D+T +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 532 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRISLDFFDDILIPEHALQDPSFY 711
P DGA+ V FR VVF PF+ EI++GK+K CS EG+ +SL FFDDILIP +LQ P+ +
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 712 DEAERLWVWKFD----GNDMYMDLQEPIRFRVHSVKF-NSPPTPIQLANA 846
DEAE++WVW+++ +D+YMD E IRFRV F ++ PT A+A
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADA 170
>dbj|BAB33335.1| KIAA1665 protein [Homo sapiens]
Length = 217
Score = 154 bits (390), Expect = 1e-36
Identities = 71/170 (41%), Positives = 114/170 (66%), Gaps = 5/170 (2%)
Frame = +1
Query: 352 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 531
MF++ ++ D +R+ P + D++ + + ++ +KV+ N+GL + ++D+T +E +V+
Sbjct: 14 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 73
Query: 532 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRISLDFFDDILIPEHALQDPSFY 711
P DGA+ V FR VVF PF+ EI++GK+K CS EG+ +SL FFDDILIP +LQ P+ +
Sbjct: 74 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 133
Query: 712 DEAERLWVWKFD----GNDMYMDLQEPIRFRVHSVKF-NSPPTPIQLANA 846
DEAE++WVW+++ +D+YMD E IRFRV F ++ PT A+A
Sbjct: 134 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADA 183
>ref|NP_084505.2| RIKEN cDNA 5031409G22 [Mus musculus] gi|27662966|ref|XP_216998.1|
similar to RIKEN cDNA 5031409G22 [Rattus norvegicus]
gi|29427995|sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide (RPC8)
gi|14789799|gb|AAH10793.1| RIKEN cDNA 5031409G22 [Mus
musculus] gi|26387053|dbj|BAB31893.2| unnamed protein
product [Mus musculus]
Length = 204
Score = 154 bits (389), Expect = 2e-36
Identities = 70/165 (42%), Positives = 110/165 (66%), Gaps = 6/165 (3%)
Frame = +1
Query: 352 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 531
MF++ ++ D +R+ P + D++ + + ++ +KV+ N+GL + ++D+T +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 532 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRISLDFFDDILIPEHALQDPSFY 711
P DGA+ V FR VVF PF+ EI++GK+K CS EG+ +SL FFDDILIP +LQ P+ +
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 712 DEAERLWVWKFD----GNDMYMDLQEPIRFRVHSVKF--NSPPTP 828
DEAE++WVW+++ +D+YMD E IRFRV F SP P
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGP 165
>dbj|BAC75582.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide [Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 151 bits (382), Expect = 1e-35
Identities = 73/165 (44%), Positives = 114/165 (68%), Gaps = 4/165 (2%)
Frame = +1
Query: 352 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 531
MF+++QIE + + P L++ +DA+ +E+ F+DKV+ NLGL VS+YD+ ++EGGF++
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 532 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRISLDFFDDILIPEHALQDPSFY 711
P +G + + V FRL++FRPF+GE++VGK+ +GL +SLDFF DI IP H +Q Y
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQ----Y 116
Query: 712 DEAERL---WVWKF-DGNDMYMDLQEPIRFRVHSVKFNSPPTPIQ 834
A L W+ K DG+++Y+DL + IRF V S+K+ PP P++
Sbjct: 117 GTARALDGRWMLKTEDGDELYLDLDDEIRFLVSSIKY--PPIPVE 159
>ref|NP_648490.1| CG7339-PA [Drosophila melanogaster] gi|7294695|gb|AAF50032.1|
CG7339-PA [Drosophila melanogaster]
gi|21428376|gb|AAM49848.1| GM16372p [Drosophila
melanogaster]
Length = 240
Score = 150 bits (378), Expect = 3e-35
Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 5/153 (3%)
Frame = +1
Query: 352 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 531
MF++ +++D +R+ P +DAV I+++ +KV+ N+GL +++ D+ +++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 532 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRISLDFFDDILIPEHALQDPSFY 711
P DGA+ V FR VVFRP +G +I GK+++CSREG+ ++L FFDDILIP ALQ PS +
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSRF 120
Query: 712 DEAERLWVWKF---DG--NDMYMDLQEPIRFRV 795
DEAE+ WVW++ DG +D++MD+ EPI+FRV
Sbjct: 121 DEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRV 153
