KCC000850A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000850A_C01 KCC000850A_c01
GTCCAGCAGTCCTACAACACGAGCCAATCACTAGGAGTCAACAACAACTACAACTCACAT
ATTCTCGGCCCACTGGGCCCACCCTGAACGTAAGAACTCTCCTGCGCACGCGTCTTGACG
CAGCCGTTTGGCAGATACACGGCCAGCTCGTAGGCCTCGACTATTTTCCGGGCAAAGAGT
ATTCTAGAGTCGACCAACTACGGGAATGGCCCCGGCGCCGTGCGCCTTGGGGCCGACGTC
CTCCACCCACCAGCAATCGTCGGGCAGCCATAAGTCCAAGGGCAAGGGCGGCCTGCTGTC
TAAGCTCCTAGGCGGATGGCGGAGCGCTTCCTCAGGCGGACGTGGCACCTCGAGTCTGGC
TCCCAGGCCCTCGAGCGCTCCTCAGTGGAACGGACAAGTTACAGGCTTGAATGCTCCTGG
CTCGGTGGCTTGCGGTGCTACCGCAACGGTGCAGGGAGCAACTGCACCCCCCTGCGGTAA
CCAGTGCACCTCCGCGCCATTCCTGGGCTATGCTACGGACCTGGAAAAGCATTATGAGCT
GGGCCGTGAGCTCGGCAAGGGTGGAAACGGCGTGGTGCGCATTGCTAAGAACCTAATCAC
GGGCGAGGAGTACGCCTGCAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000850A_C01 KCC000850A_c01
         (622 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD70166.1| putative calcium-dependent protein kinase [Spiro...    47  3e-04
ref|XP_212862.2| similar to SH3-binding kinase [Rattus norvegicus]     45  8e-04
ref|NP_192383.1| calcium-dependent protein kinase, putative (CDP...    45  0.001
gb|AAD03455.1| contains similarity to eukaryotic protein kinase ...    45  0.001
gb|AAK52801.1|AF363784_1 calcium-dependent protein kinase CDPK1 ...    43  0.003

>emb|CAD70166.1| putative calcium-dependent protein kinase [Spirodela punctata]
          Length = 182

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 308 LGGWRSASSGGRGTS-SLAPRPSSAPQWNGQVTG--LNAPGSVACGATATVQGATAPPCG 478
           +G   S S+  RG+  +  P P   P       G   NAP     GA   V     PP  
Sbjct: 1   MGNCFSQSTQTRGSKRNQKPDPLDEPSTRQAQNGGSANAPPQKPPGAVTGV--LRQPPAK 58

Query: 479 NQCTSAPFLGYAT-DLEKHYELGRELGKGGNGVVRIAKNLITGEEYACK 622
                 P LG    D+ + Y +G+ELG+G  GV  +  + +TG+++ACK
Sbjct: 59  GSAAVGPVLGRRMEDVRQTYAIGKELGRGQFGVTHLCTDRVTGKQFACK 107

>ref|XP_212862.2| similar to SH3-binding kinase [Rattus norvegicus]
          Length = 506

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 43/139 (30%), Positives = 58/139 (40%), Gaps = 3/139 (2%)
 Frame = +2

Query: 215 APCALGPTSSTHQQSSGSHKSKGKGGLLSKLLGGWRSASSGGRGTSSLAPRPSSAPQWNG 394
           AP +LG    T    S +  S G GG LS    G     +  R  ++ +PRP    + + 
Sbjct: 49  APQSLG----TRATKSLATPSAGGGGALSPSRAGQTKTDTAPRPPAAASPRPQPREKMSL 104

Query: 395 QVTGLNAPGSVACGA--TATVQGATAPPCGNQCTSAPFLGYA-TDLEKHYELGRELGKGG 565
                    S++C     A V GA  P       +      A +D+ KHYEL RELGKG 
Sbjct: 105 GFPEPEPLHSLSCCGPRAAPVPGAGVPLLTKDMQALTLRTLAASDVTKHYELVRELGKGT 164

Query: 566 NGVVRIAKNLITGEEYACK 622
            G V +     TG + A K
Sbjct: 165 YGKVDLVAYKGTGTKMALK 183

>ref|NP_192383.1| calcium-dependent protein kinase, putative (CDPK) [Arabidopsis
           thaliana] gi|25287683|pir||F85059 probable calcium
           dependent protein kinase [imported] - Arabidopsis
           thaliana gi|7267232|emb|CAB80839.1| putative calcium
           dependent protein kinase [Arabidopsis thaliana]
           gi|16648907|gb|AAL24305.1| Unknown protein [Arabidopsis
           thaliana] gi|20148457|gb|AAM10119.1| unknown protein
           [Arabidopsis thaliana]
          Length = 520

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +2

Query: 518 DLEKHYELGRELGKGGNGVVRIAKNLITGEEYACK 622
           D+ K Y LGRELG+GG G+  + K + TG  YACK
Sbjct: 64  DIRKFYSLGRELGRGGLGITYMCKEIGTGNIYACK 98

>gb|AAD03455.1| contains similarity to eukaryotic protein kinase domains (Pfam:
           PF00069, score=253.1, E=3.8e-72, N=1) and EF hand
           domains (Pfam: PF00036, score=94.6, E=2e-24 , N=4)
           [Arabidopsis thaliana]
          Length = 584

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +2

Query: 518 DLEKHYELGRELGKGGNGVVRIAKNLITGEEYACK 622
           D+ K Y LGRELG+GG G+  + K + TG  YACK
Sbjct: 64  DIRKFYSLGRELGRGGLGITYMCKEIGTGNIYACK 98

>gb|AAK52801.1|AF363784_1 calcium-dependent protein kinase CDPK1 [Lycopersicon esculentum]
          Length = 521

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 17/35 (48%), Positives = 25/35 (70%)
 Frame = +2

Query: 518 DLEKHYELGRELGKGGNGVVRIAKNLITGEEYACK 622
           D++ HY LG+ELG+G  GV  +   + TG++YACK
Sbjct: 68  DVKLHYTLGKELGRGQFGVTYLCTEIATGQQYACK 102



EST assemble image


clone accession position
1 MXL052c12_r BP096083 1 447
2 LCL087h09_r AV631036 -9 512
3 MXL068g06_r BP097018 -9 340
4 MXL052c12_r BP096083 1 447
5 MXL038f05_r BP095238 1 296
6 MXL064f04_r BP096771 27 431
7 CL76e12_r AV397123 32 590
8 MXL017b05_r BP094025 35 469
9 MXL043a06_r BP095516 61 485
10 LCL022f03_r AV627200 96 628
11 LCL085b07_r AV630849 492 600




Chlamydomonas reinhardtii
Kazusa DNA Research Institute