KCC000845A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000845A_C01 KCC000845A_c01
ctacttcacagcagctctatagctcagTGGCTGTCGGCAAGCCCGAGCCTCTGGGCCCCA
GCCGCTCCGGCTCCGGCGTCAACTTCGCGCTGTTCTCCAAACACGCCAAGAGCGTGAGGC
TGTGCCTGTTTGACGGCGAGGCGCAGCCGCTGGGCGAGGTGGACTGCAACCGCACGGGCG
ACGTGTGGCACGTGGAGCTGGCGGACCTGCCGCTCAGCGGGCTGCGCTACGGCTTCAAGG
TGGCGGGCGACGGCGGCTGGGACACGGGCGCGCGCTGGGCGCCTGGCCGCGTGCTGCTGG
ACCCCTACGCGCCGCTGGTGGCGGGGCGGCGCCAGTTCGGGGTGCGCGACGCCGTGGAGC
AGTTTAAGGGCAAGGAGGGCAGCCAGTTCCTGGGCGCCTTCGACTTCTCCTCCGCGCCCT
ACGACTGGGGCGCTCAGGAGGAGGCGGGCCGCCCGCGCACCGCCCTCAAGGACCTGGTGA
TCTACGAGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000845A_C01 KCC000845A_c01
         (490 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO17049.2| isoamylase-type starch debranching enzyme ISO3 [Z...   125  3e-28
ref|NP_192641.2| glycoside hydrolase family 13 [Arabidopsis thal...   124  6e-28
gb|AAN15319.1| isoamylase isoform 3 [Solanum tuberosum]               123  1e-27
pir||B85091 isoamylase-like protein [imported] - Arabidopsis tha...   122  2e-27
ref|ZP_00007190.1| COG1523: Type II secretory pathway, pullulana...    92  4e-18

>gb|AAO17049.2| isoamylase-type starch debranching enzyme ISO3 [Zea mays]
          Length = 694

 Score =  125 bits (314), Expect = 3e-28
 Identities = 72/166 (43%), Positives = 94/166 (56%), Gaps = 9/166 (5%)
 Frame = +3

Query: 18  YSSVAVGKPEPLGPSRSGSGVNFALFSKHAKSVRLCLFDGEAQPLGEVDC---------N 170
           YSS   GK  PLG S+   G+NFA+FS+HA SV LCL   E     +VD          N
Sbjct: 14  YSS---GKAFPLGVSQVDDGLNFAIFSQHASSVTLCLNFPERGNQDDVDIVEFALDRQRN 70

Query: 171 RTGDVWHVELADLPLSGLRYGFKVAGDGGWDTGARWAPGRVLLDPYAPLVAGRRQFGVRD 350
           +TGD+WHV +  LP SG+ YG+++ G  GW  G R+    +LLDPYA LV GR+ F V  
Sbjct: 71  KTGDIWHVSVEGLPASGVLYGYRINGPQGWQQGHRFDDSVILLDPYAKLVYGRKHFAV-- 128

Query: 351 AVEQFKGKEGSQFLGAFDFSSAPYDWGAQEEAGRPRTALKDLVIYE 488
                + ++ SQ  G +DF S+P+DWG  +    P     DLVIYE
Sbjct: 129 -----EKEKPSQLFGTYDFDSSPFDWG--DNYKLPNLPETDLVIYE 167

>ref|NP_192641.2| glycoside hydrolase family 13 [Arabidopsis thaliana]
           gi|20259518|gb|AAM13879.1| putative isoamylase
           [Arabidopsis thaliana] gi|22136708|gb|AAM91673.1|
           putative isoamylase [Arabidopsis thaliana]
          Length = 764

 Score =  124 bits (311), Expect = 6e-28
 Identities = 70/165 (42%), Positives = 97/165 (58%), Gaps = 11/165 (6%)
 Frame = +3

Query: 27  VAVGKPEPLGPSRSGSGVNFALFSKHAKSVRLCLF-----------DGEAQPLGEVDCNR 173
           V+ G+  PLG S+   G+NFALFS++A SV LCL            DG  + + +   N+
Sbjct: 85  VSSGEVSPLGVSQVDKGINFALFSQNATSVTLCLSLSQSGKDDTDDDGMIELVLDPSVNK 144

Query: 174 TGDVWHVELADLPLSGLRYGFKVAGDGGWDTGARWAPGRVLLDPYAPLVAGRRQFGVRDA 353
           TGD WH+ + DLPL+ + YG++V G G W  G R+    +LLDPYA LV G   FG  D+
Sbjct: 145 TGDTWHICVEDLPLNNVLYGYRVDGPGEWQQGHRFDRSILLLDPYAKLVKGHSSFG--DS 202

Query: 354 VEQFKGKEGSQFLGAFDFSSAPYDWGAQEEAGRPRTALKDLVIYE 488
            ++F     +QF G +DF S+P+DWG  ++   P    KDLVIYE
Sbjct: 203 SQKF-----AQFYGTYDFESSPFDWG--DDYKFPNIPEKDLVIYE 240

>gb|AAN15319.1| isoamylase isoform 3 [Solanum tuberosum]
          Length = 766

 Score =  123 bits (309), Expect = 1e-27
 Identities = 65/160 (40%), Positives = 92/160 (56%), Gaps = 6/160 (3%)
 Frame = +3

Query: 27  VAVGKPEPLGPSRSGSGVNFALFSKHAKSVRLCLF------DGEAQPLGEVDCNRTGDVW 188
           V+ G   PLG S + SG+NFA+FS+HA +V LC+       DG  +   +   NRTGD+W
Sbjct: 90  VSPGLAHPLGVSETESGINFAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNRTGDIW 149

Query: 189 HVELADLPLSGLRYGFKVAGDGGWDTGARWAPGRVLLDPYAPLVAGRRQFGVRDAVEQFK 368
           H+ + +LP  G+ YG+++ G   W  G R+    +L+DPYA L+ GRR FG        +
Sbjct: 150 HICIKELPQGGVLYGYRIDGPRNWHEGHRFDDSIILVDPYAKLIEGRRVFG-------DE 202

Query: 369 GKEGSQFLGAFDFSSAPYDWGAQEEAGRPRTALKDLVIYE 488
             +  +F G +DF+S P+DWG  E    P    KDLVIYE
Sbjct: 203 SNKMCRFFGTYDFNSLPFDWG--ENYKLPNIPEKDLVIYE 240

>pir||B85091 isoamylase-like protein [imported] - Arabidopsis thaliana
           gi|7267544|emb|CAB78026.1| isoamylase-like protein
           [Arabidopsis thaliana]
          Length = 702

 Score =  122 bits (306), Expect = 2e-27
 Identities = 70/170 (41%), Positives = 97/170 (56%), Gaps = 16/170 (9%)
 Frame = +3

Query: 27  VAVGKPEPLGPSRSGSGVNFALFSKHAKSVRLCLF----------------DGEAQPLGE 158
           V+ G+  PLG S+   G+NFALFS++A SV LCL                 DG  + + +
Sbjct: 9   VSSGEVSPLGVSQVDKGINFALFSQNATSVTLCLSLSQRYITSSGKDDTDDDGMIELVLD 68

Query: 159 VDCNRTGDVWHVELADLPLSGLRYGFKVAGDGGWDTGARWAPGRVLLDPYAPLVAGRRQF 338
              N+TGD WH+ + DLPL+ + YG++V G G W  G R+    +LLDPYA LV G   F
Sbjct: 69  PSVNKTGDTWHICVEDLPLNNVLYGYRVDGPGEWQQGHRFDRSILLLDPYAKLVKGHSSF 128

Query: 339 GVRDAVEQFKGKEGSQFLGAFDFSSAPYDWGAQEEAGRPRTALKDLVIYE 488
           G  D+ ++F     +QF G +DF S+P+DWG  ++   P    KDLVIYE
Sbjct: 129 G--DSSQKF-----AQFYGTYDFESSPFDWG--DDYKFPNIPEKDLVIYE 169

>ref|ZP_00007190.1| COG1523: Type II secretory pathway, pullulanase PulA and related
           glycosidases [Rhodobacter sphaeroides]
          Length = 704

 Score = 91.7 bits (226), Expect = 4e-18
 Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
 Frame = +3

Query: 24  SVAVGKPEPLGPSRSGSGVNFALFSKHAKSVRLCLF--DGEAQPLGEVDCNRTGDVWHVE 197
           + A G+P PLG S  G GVNFALFS HA+ V LCLF  DG  + L      R GD+WH++
Sbjct: 14  ATAPGRPWPLGASFDGEGVNFALFSAHAEKVELCLFAPDGRREALRLPLTERDGDIWHLK 73

Query: 198 LADLPLSGLRYGFKVAGDGGWDTGARWAPGRVLLDPYAPLVAGRRQF---------GVRD 350
           +  L L G  YG++V G    + G R+ P ++L+DPYA  + GR ++         G   
Sbjct: 74  VNGL-LPGQLYGYRVHGPYQPEQGHRFNPNKLLIDPYARKLEGRLRWSDAVMGYRVGSAR 132

Query: 351 AVEQFKGKEGSQFLGAFDFSSAPYDWGAQEEAGRPRTALKDLVIYE 488
           A   F G++ +  +         ++WG       P  AL + +IYE
Sbjct: 133 ADLSFDGRDSAFAVPKSVVVGHNFNWGPD---APPERALTETLIYE 175



EST assemble image


clone accession position
1 CL75e12_r AV397060 1 490
2 LCL028b12_r AV627539 28 475




Chlamydomonas reinhardtii
Kazusa DNA Research Institute