KCC000844A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000844A_C01 KCC000844A_c01
cgggaaccttgcGATAGTTTATGCTGCCCGGGCATTGCGCACCAGAAGAGCGATTGCGCA
AGCCCACGGACTTATCCCGTGAAGTGCATTATATATCATTTCATTGGATTTGCAGGAGTA
GCGTTTGACGGCGCGAGTTCGGATGCGAAGGCTAGTACTTTGTAGTAGATAGCCCGAGCC
CTCGTGCACCAATGGAACACCTGAAGCATGGACTGCAAGGCGGAGGTCTTGTACCGCAAG
CCAGCTTGGACAGTGCGGCGCCGACTCGGGGACAAGCAGATGGTGGTGACCTCGCGCGAC
GGTCGGCCCCTGCGCCCGGCCTATGCCTGTCCTCTCCCAATACTCAGCGCAATCTCGGGC
CATCGGCGCATGGACCGATACATGCGCCATCGGGGCGGGGCTTCGCGAGCCCCCTGCCAA
CATCCGCTGAGCTCTCGCGCCGTCTGCGGGGGTTGCTTAACACAAGCCATCCAGTAAACT
TCCGGGACGTTGAGCTGATGCCACCCACCTGTGCCGATACCGAGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000844A_C01 KCC000844A_c01
         (527 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_218378.2| similar to DYRK1B protein [Rattus norvegicus]         40  0.024
ref|NP_073713.1| C-terminal binding protein 2 isoform 2; ribeye ...    39  0.032
emb|CAC09346.1| putative wall-associated kinase 2 [Oryza sativa ...    38  0.070
ref|NP_903881.1| conserved hypothetical protein [Chromobacterium...    37  0.12
ref|ZP_00054366.1| COG0194: Guanylate kinase [Magnetospirillum m...    37  0.20

>ref|XP_218378.2| similar to DYRK1B protein [Rattus norvegicus]
          Length = 689

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 36/112 (32%), Positives = 42/112 (37%), Gaps = 1/112 (0%)
 Frame = +3

Query: 171 SPSPRAPMEHLKHGLQGGGLVPQASLDSAAPTRGQADGGDLARRSAPAPGLCLSSPNTQR 350
           +P+PR P      GL GGG    A  + A P R            APAPGL    P+   
Sbjct: 14  APAPRGPSASPDPGLSGGGS-RGAGCEKAPPGR------------APAPGLTPLRPSEPT 60

Query: 351 NLGPSAHGPIHA-PSGRGFASPLPTSAELSRRLRGLLNTSHPVNFRDVELMP 503
              P  HGP    P  +     LP    L RRL        P+ FRD    P
Sbjct: 61  MAVPPGHGPFSGFPGPQEHTQVLPDVRLLPRRL--------PLAFRDATSAP 104

>ref|NP_073713.1| C-terminal binding protein 2 isoform 2; ribeye [Homo sapiens]
           gi|12034653|gb|AAG45951.1|AF222711_1 ribeye [Homo
           sapiens]
          Length = 985

 Score = 39.3 bits (90), Expect = 0.032
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
 Frame = +3

Query: 174 PSPRAPMEHLKHG--LQGGGLVPQASLDSAAPTRGQAD-GGDLARRSAPAPGL-CLSSPN 341
           P PRA      H   L  G L   ASL +AAP +  +   GD ARR + AP    L +  
Sbjct: 363 PLPRARSSSFSHRSELLHGDL---ASLGAAAPLQTASPRAGDPARRPSSAPSQHLLETAA 419

Query: 342 TQRNLGPSAHGPIHAPSGRGFASPLPTSAELSRRLRGLLNTSHPV 476
           T    G   H P H PS  G++SP P +      L   L+ +HP+
Sbjct: 420 TYSAPGVGTHAP-HFPSNSGYSSPTPCA------LTARLSPTHPL 457

>emb|CAC09346.1| putative wall-associated kinase 2 [Oryza sativa (indica
           cultivar-group)]
          Length = 490

 Score = 38.1 bits (87), Expect = 0.070
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = -2

Query: 337 GEDRHRPGAGADRRARSPPSACPRVGAALSKLACGTRPPPCSP 209
           G  R R    + RRAR PP   P + AAL++  C  RPPP SP
Sbjct: 334 GFGRRRGATSSRRRARPPPPRSPAI-AALARHTCLLRPPPLSP 375

>ref|NP_903881.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472] gi|34105517|gb|AAQ61871.1| conserved hypothetical
           protein [Chromobacterium violaceum ATCC 12472]
          Length = 489

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 34/115 (29%), Positives = 45/115 (38%), Gaps = 12/115 (10%)
 Frame = -2

Query: 490 TSRKFTGWLVLSNPRRRRESSADVGRGLAKPRPDGACIGPCADG------------PRLR 347
           T+ +  G   LS   RR  ++   GRG+A P P  AC G   DG            PR R
Sbjct: 243 TTAQDRGGRRLSGAERRSPAAEPSGRGMAAPAPTQACPGIGRDGGGDHRRRGRHLAPRQR 302

Query: 346 *VLGEDRHRPGAGADRRARSPPSACPRVGAALSKLACGTRPPPCSPCFRCSIGAR 182
             L   R RP     RR + PP+   R+  A  +       P   P  R ++  R
Sbjct: 303 RQLAARRRRP-----RREQRPPAPAARLLPADCRQPERIWLPAARPASRAALARR 352

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +3

Query: 255 AAPTRG-QADGGDLARRSAPAPGLCLSSPNTQRNLGPSAHGPIHAPSGRGFASPLPTSA 428
           A P R   A  G  A R    PG        +R  G     P   PSGRG A+P PT A
Sbjct: 220 AVPARRLPARTGRRAGRDETQPGTTAQDRGGRRLSGAERRSPAAEPSGRGMAAPAPTQA 278

>ref|ZP_00054366.1| COG0194: Guanylate kinase [Magnetospirillum magnetotacticum]
          Length = 335

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
 Frame = -2

Query: 373 PCADGPRLR*VLGEDRHRPGAGADRR-----ARSPPSACPRVGAALSKLACGTRPPPCSP 209
           P   G R R   G   HRPG+GADRR      R+ PS  P          CG RP    P
Sbjct: 16  PGGSGARRRADPGRGPHRPGSGADRRQGRCARRTGPSGRP----------CGRRPRSAGP 65

Query: 208 --CFRCSIGARGLGL 170
             C R   G  G G+
Sbjct: 66  GRCHRPQAGLPGPGV 80



EST assemble image


clone accession position
1 MXL059f08_r BP096495 1 455
2 CL75e06_r AV397079 13 527
3 HCL050a10_r AV642342 19 494




Chlamydomonas reinhardtii
Kazusa DNA Research Institute