KCC000841A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000841A_C01 KCC000841A_c01
ataattcatttgactcaatgataACTACACAAATGCTGCGAACTCTTACGTGACCTTGTT
AAGCACTGACAGCTTGCCACCACCATGGCGCCCGGGCCAGAGGTGGCTGGCATTGATATC
TTTGTCCGTGTTAAGCCTGTACCAAAGCCGTCTCCAAGATTAGGAATTGACAACTCGGAA
AACAAGGTCGAGTTCAACATCCCTAGGAATGAAGCCGCGGGACTCGTGAACAACCAGCGC
GAGCATTTTGAGTTCCGCTTCAACGGAATCCTCCAGGCTGACGCAAAGCAAGATGAGGTC
TTCGAGCGCGTCGCCCGGCCGGTGGTCATGGGGGCGATGGAGGGCTACAACGGCACCATC
TTCGCCTACGGCCAGACGGGCTCGGGAAAGACCTTCACCATCACGGGAGGCCCGGAGCGC
TATGTGGACCGTGGTATCATCCCACGGTCAATCTCCGCCATCTTCAGTGAGATATCCAAG
CGCCATGACTACCAGTACTCGGTCCACATCTCCTACCTGGAGATTTACAACAATGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000841A_C01 KCC000841A_c01
         (536 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_796026.1| kinesin family member 6; kinesin 6 [Mus musculu...   152  3e-36
ref|XP_283437.1| RIKEN cDNA D130004B10 gene [Mus musculus]            152  3e-36
dbj|BAC31538.1| unnamed protein product [Mus musculus]                152  3e-36
ref|XP_343525.1| kinesin-related protein 3 [Rattus norvegicus]        151  5e-36
gb|AAL86611.1| kinesin-related protein 3B [Rattus norvegicus]         151  5e-36

>ref|NP_796026.1| kinesin family member 6; kinesin 6 [Mus musculus]
           gi|26350755|dbj|BAC39014.1| unnamed protein product [Mus
           musculus]
          Length = 481

 Score =  152 bits (384), Expect = 3e-36
 Identities = 78/145 (53%), Positives = 99/145 (67%), Gaps = 5/145 (3%)
 Frame = +1

Query: 112 IDIFVRVKPVPKPSPR--LGIDNSE---NKVEFNIPRNEAAGLVNNQREHFEFRFNGILQ 276
           I IF RVKP  +   +    ID  E   + +E  +PR+ A G VNN+RE ++F+F  I  
Sbjct: 6   IQIFARVKPTVRKQQQGIYSIDEDEKLTHSLEIVLPRDLADGFVNNKRESYKFKFQRIFD 65

Query: 277 ADAKQDEVFERVARPVVMGAMEGYNGTIFAYGQTGSGKTFTITGGPERYVDRGIIPRSIS 456
            +AKQ+ +FE +A+PV    + GYNGTIFAYGQTGSGKTFTITGG ERY DRGIIPR++S
Sbjct: 66  QEAKQEIIFEIIAKPVAESTLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLS 125

Query: 457 AIFSEISKRHDYQYSVHISYLEIYN 531
            IF ++ K     Y+ HISYLEIYN
Sbjct: 126 YIFEQLQKDSSKIYTTHISYLEIYN 150

>ref|XP_283437.1| RIKEN cDNA D130004B10 gene [Mus musculus]
          Length = 481

 Score =  152 bits (384), Expect = 3e-36
 Identities = 78/145 (53%), Positives = 99/145 (67%), Gaps = 5/145 (3%)
 Frame = +1

Query: 112 IDIFVRVKPVPKPSPR--LGIDNSE---NKVEFNIPRNEAAGLVNNQREHFEFRFNGILQ 276
           I IF RVKP  +   +    ID  E   + +E  +PR+ A G VNN+RE ++F+F  I  
Sbjct: 6   IQIFARVKPTVRKQQQGIYSIDEDEKLTHSLEIVLPRDLADGFVNNKRESYKFKFQRIFD 65

Query: 277 ADAKQDEVFERVARPVVMGAMEGYNGTIFAYGQTGSGKTFTITGGPERYVDRGIIPRSIS 456
            +AKQ+ +FE +A+PV    + GYNGTIFAYGQTGSGKTFTITGG ERY DRGIIPR++S
Sbjct: 66  QEAKQEIIFEIIAKPVAESTLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLS 125

Query: 457 AIFSEISKRHDYQYSVHISYLEIYN 531
            IF ++ K     Y+ HISYLEIYN
Sbjct: 126 YIFEQLQKDSSKIYTTHISYLEIYN 150

>dbj|BAC31538.1| unnamed protein product [Mus musculus]
          Length = 480

 Score =  152 bits (384), Expect = 3e-36
 Identities = 78/145 (53%), Positives = 99/145 (67%), Gaps = 5/145 (3%)
 Frame = +1

Query: 112 IDIFVRVKPVPKPSPR--LGIDNSE---NKVEFNIPRNEAAGLVNNQREHFEFRFNGILQ 276
           I IF RVKP  +   +    ID  E   + +E  +PR+ A G VNN+RE ++F+F  I  
Sbjct: 6   IQIFARVKPTVRKQQQGIYSIDEDEKLTHSLEIVLPRDLADGFVNNKRESYKFKFQRIFD 65

Query: 277 ADAKQDEVFERVARPVVMGAMEGYNGTIFAYGQTGSGKTFTITGGPERYVDRGIIPRSIS 456
            +AKQ+ +FE +A+PV    + GYNGTIFAYGQTGSGKTFTITGG ERY DRGIIPR++S
Sbjct: 66  QEAKQEIIFEIIAKPVAESTLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLS 125

Query: 457 AIFSEISKRHDYQYSVHISYLEIYN 531
            IF ++ K     Y+ HISYLEIYN
Sbjct: 126 YIFEQLQKDSSKIYTTHISYLEIYN 150

>ref|XP_343525.1| kinesin-related protein 3 [Rattus norvegicus]
          Length = 631

 Score =  151 bits (382), Expect = 5e-36
 Identities = 78/145 (53%), Positives = 99/145 (67%), Gaps = 5/145 (3%)
 Frame = +1

Query: 112 IDIFVRVKPVPKPSPR--LGIDNSE---NKVEFNIPRNEAAGLVNNQREHFEFRFNGILQ 276
           I IF RVKP  +   +    ID  E   + +E  +PR+ A G VNN+RE ++F+F  I  
Sbjct: 6   IQIFARVKPSVRKQQQGIYSIDEDEKLASSLEIVLPRDLADGFVNNKRESYKFKFQRIFD 65

Query: 277 ADAKQDEVFERVARPVVMGAMEGYNGTIFAYGQTGSGKTFTITGGPERYVDRGIIPRSIS 456
            +AKQ+ +FE +A+PV    + GYNGTIFAYGQTGSGKTFTITGG ERY DRGIIPR++S
Sbjct: 66  QEAKQEIIFEIIAKPVAESTLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLS 125

Query: 457 AIFSEISKRHDYQYSVHISYLEIYN 531
            IF ++ K     Y+ HISYLEIYN
Sbjct: 126 YIFEQLQKDSSKIYTTHISYLEIYN 150

>gb|AAL86611.1| kinesin-related protein 3B [Rattus norvegicus]
          Length = 452

 Score =  151 bits (382), Expect = 5e-36
 Identities = 78/145 (53%), Positives = 99/145 (67%), Gaps = 5/145 (3%)
 Frame = +1

Query: 112 IDIFVRVKPVPKPSPR--LGIDNSE---NKVEFNIPRNEAAGLVNNQREHFEFRFNGILQ 276
           I IF RVKP  +   +    ID  E   + +E  +PR+ A G VNN+RE ++F+F  I  
Sbjct: 5   IQIFARVKPSVRKQQQGIYSIDEDEKLASSLEIVLPRDLADGFVNNKRESYKFKFQRIFD 64

Query: 277 ADAKQDEVFERVARPVVMGAMEGYNGTIFAYGQTGSGKTFTITGGPERYVDRGIIPRSIS 456
            +AKQ+ +FE +A+PV    + GYNGTIFAYGQTGSGKTFTITGG ERY DRGIIPR++S
Sbjct: 65  QEAKQEIIFEIIAKPVAESTLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLS 124

Query: 457 AIFSEISKRHDYQYSVHISYLEIYN 531
            IF ++ K     Y+ HISYLEIYN
Sbjct: 125 YIFEQLQKDSSKIYTTHISYLEIYN 149



EST assemble image


clone accession position
1 LCL005b12_r AV626253 1 420
2 LCL038c01_r AV628199 24 251
3 LCL028a09_r AV627525 24 523
4 LCL011e07_r AV626569 28 300
5 LCL060b05_r AV629515 28 475
6 LCL088c06_r AV631063 28 537
7 CL75b12_r AV397055 49 515
8 LCL082f04_r AV630682 49 425




Chlamydomonas reinhardtii
Kazusa DNA Research Institute