KCC000840A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000840A_C01 KCC000840A_c01
GCACGAGCTCAAAACCCCTTTCACGCAAAGCAGATTCGCGACATTTGCAAGCTCTCGAGG
CTTCGGAACGGAGGGCGCCACCATGGTTCTGCACATGCTAGCAGTGTTTGGCCGCGAGAC
GGCCCACCCTCCTGTGTTGATCGAGTCGGAGGAGGCGCTCAAGAAGACACATGCGCCAAT
GTTAACGGACGAGGAGCAAGCGGCAGAGGACGCTGCTTGCGCCAAGGTTATAGACACTGT
ATTCAACGCGGCAAAGCCCGCGTCAAGGCACAAGCAGCTGCTGGGCAAGGGCAGTGGATA
CCTGTACGAGGCGTCGCCCTACTGCTCGTACGCTGAGCGCGACGGCGTGCACGCTCATCT
TCACTGGGGAGGTCGGCGAGTGGCCCGGCATTGACGTCGTCTCTTCCGCCCACGACGCCT
TCGTCCGCAATGAGCCCCCGCTCGAGGCGAACGACGCCGCCTGGCTGCTCGACTTCTACG
GGACGTTCGGCCGCGGCGCCAGCGAAAGCACCACGCAGCGCGCGCTGGAATGCCTGGCCC
GTGTGAAGGGCACCTTCGCTTTCATCATCTACGATGCCGTGCACCACCGCGTGCTGGCCG
CCCGCGACAGCGAGGGCGTGCAGCCGCTGTTCTGGGGCTGCACCGACAGCGGCCAGCTCA
TGTTCGGCAGCGTGGCCGACGACCTGGACGGATGCAACCCCACCGCCGCGCCCTTCCCCT
CCGGCACCCTGTTCGCCAGTGAGCGGCACACGGTGGCGTACAGCCCCGGTGCTTACGGCT
GGGTGATTGTGGATGATGACTTTCCCGGCCTCATCATGAGCTTCCAGCGCACCAAGGAGG
GGGCAGAGGGCTGGCGCAACGTCAAGGCCATTCCGCGCGTCACAGCCAGGGCGTGGTGTC
GGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000840A_C01 KCC000840A_c01
         (904 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_310394.1| ENSANGP00000005616 [Anopheles gambiae] gi|21293...    68  2e-10
pir||S41890 hypothetical protein - garden asparagus gi|452714|em...    60  7e-08
gb|AAP03363.1| hypothetical protein [Oryza sativa (japonica cult...    59  9e-08
pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    58  2e-07
ref|NP_821286.1| hypothetical protein [Streptomyces avermitilis ...    58  2e-07

>ref|XP_310394.1| ENSANGP00000005616 [Anopheles gambiae] gi|21293942|gb|EAA06087.1|
           ENSANGP00000005616 [Anopheles gambiae str. PEST]
          Length = 533

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 51/154 (33%), Positives = 72/154 (46%)
 Frame = +3

Query: 306 TRRRPTARTLSATACTLIFTGEVGEWPGIDVVSSAHDAFVRNEPPLEANDAAWLLDFYGT 485
           T R+P   T   T   L+  GE+  +  + + S  +DA ++ E     +D   L+ FY  
Sbjct: 46  TGRQPLTSTNGMTH--LVANGEIYNF--LHMASLINDA-LKFEYYTPRSDCDVLVAFYEL 100

Query: 486 FGRGASESTTQRALECLARVKGTFAFIIYDAVHHRVLAARDSEGVQPLFWGCTDSGQLMF 665
           FG          A   L  V+G FAF++YD   HR+L ARD  G+ PL++G  D+G L F
Sbjct: 101 FG----------ADRLLQIVRGMFAFVLYDCSTHRLLVARDPVGIVPLYYGWDDAGSLWF 150

Query: 666 GSVADDLDGCNPTAAPFPSGTLFASERHTVAYSP 767
            S    L GC P    FP G  +   R +    P
Sbjct: 151 ASELKCLVGCCPEVNVFPPGHSYYGLRESFVPKP 184

>pir||S41890 hypothetical protein - garden asparagus gi|452714|emb|CAA54526.1|
           unknown [Asparagus officinalis]
          Length = 259

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
 Frame = +3

Query: 465 LLDFYGTFGRGASEST-------TQR------ALECLARVKGTFAFIIYDAVHHRVLAAR 605
           L+  YG  GR  SE+        T R      A + L  + G+FAF+IYD     V AA+
Sbjct: 95  LIRQYGLCGRSTSEAMLVIEAYRTLRDRGPYPADQVLKDLNGSFAFVIYDNKTGSVFAAQ 154

Query: 606 DSEGVQPLFWGCTDSGQLMFGSVADDLD----GCNPTAAPFPSGTLFASE 743
             +G  PLFWG    G  +   + DDL+    GC  + APFP+G +F+SE
Sbjct: 155 SYDGRVPLFWGVACDGSAV---ICDDLNVMKSGCGKSFAPFPNGCMFSSE 201

>gb|AAP03363.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 464

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 81/287 (28%), Positives = 114/287 (39%), Gaps = 23/287 (8%)
 Frame = +1

Query: 103 SVWPRDGPPSCVDRVGGGAQEDTCANVNGRGASGRGRCLRQGYRHCIQRGKARVKAQAAA 282
           + W RDG  +   RV   A+    +   GR A+ RG   R G R   +R + R   +AA 
Sbjct: 77  AAWRRDGRAAAGGRV---ARRQRGSGGAGREAAARGSRRRHGARGRRRRWRRRRGGRAAR 133

Query: 283 G-------QGQWIPVRGVALLLVR*ARRRARSSSLGRSASGPALTSSLPPTTPSSAMSPR 441
           G           +P    A++     RR + ++     A  PA+ S  PP  P+S   P 
Sbjct: 134 GGDARLLPSSPVVPSHLPAVVPSLPCRRPSSAAPAAALARRPAVPS--PP--PASRPPPL 189

Query: 442 SRRTTPPGCSTSTGRSAAAPAKAPRSARWNAWPV*RAPSLSSSTMPCTTACWPPATARAC 621
            R   PP    +T   +A P  +P S      P  R P+ + +  P       PA+  + 
Sbjct: 190 PRLALPPVDVATTSLGSATPPSSPAS------PPPR-PNFAGTPTPA------PASPSSS 236

Query: 622 SRCSGAAPTAASSCSAAWPT--TWTDATPPPR--------PSPPAPCSPVSGTRWRTAPV 771
           S    AAP+AA     A P+  + +   PPPR        PSP  P  P+   R    P 
Sbjct: 237 STSPPAAPSAAPVHQPALPSPPSASPHRPPPRLLLGFAGTPSPRRPLHPLRRQRPFGRPF 296

Query: 772 LTAG*LWMMT------FPASS*ASSAPRRGQRAGATSRPFRASQPGR 894
           L  G     T        A+S ++S P R   AG   R  R+S P R
Sbjct: 297 LLPGSSACCTSTIFGIAAATSSSASPPLRPNTAGVRRRLHRSSSPAR 343

 Score = 35.4 bits (80), Expect = 1.3
 Identities = 42/122 (34%), Positives = 47/122 (38%), Gaps = 1/122 (0%)
 Frame = -2

Query: 735 RTGCRRGRARRWGCIRPGRRPRCRT*-AGRCRCSPRTAAARPRCRGRPARGGARHRR**K 559
           RTG   G AR     R G R    T  AG    + R +A R        R GA  R    
Sbjct: 7   RTGRNDGDARAATRCRHGARSGGATGGAGLDAATRRASAGREAAMAMGGRRGAGRRCDGD 66

Query: 558 RRCPSHGPGIPARAAWCFRWRRGRTSRRSRAARRRRSPRAGAHCGRRRRGRKRRRQCRAT 379
           R       G   RAAW    R GR +   R ARR+R    GA      RG +RR   R  
Sbjct: 67  RMMARRRDG---RAAWR---RDGRAAAGGRVARRQRGS-GGAGREAAARGSRRRHGARGR 119

Query: 378 RR 373
           RR
Sbjct: 120 RR 121

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 8/191 (4%)
 Frame = +1

Query: 349 ARSSSLGRSASGPALTSSLPPTTPSSAMSPRSRRTTPPGCSTSTGRSAAAPAKAPRSA-- 522
           A + +   +A+ PA  ++  P TP++A +P +  T     + +T  +AA PA+A R+A  
Sbjct: 284 AATDATAATAATPARAAT--PATPATAATPATPATAATAATAATAATAATPARAARAATP 341

Query: 523 RWNAWPV*RAPSLSSST-MPCTTACWPPATARACSRCSGA----APTAASSCSAAWPTTW 687
              A P   A + +++T     TA  P   ARA +  + A    A TAA++ +AA P   
Sbjct: 342 ATAATPATAATAATAATAATAATAATPARAARAATPATAATAATAATAATAATAATPARA 401

Query: 688 TDATPPPRPSPPA-PCSPVSGTRWRTAPVLTAG*LWMMTFPASS*ASSAPRRGQRAGATS 864
             A  P  P+ PA P +P +     TA           T   ++ A++AP         +
Sbjct: 402 ARAATPATPATPATPATPATAATAATAATAATA----ATAATAATAATAP-------TPA 450

Query: 865 RPFRASQPGRG 897
           R  RA+ P  G
Sbjct: 451 RAARAATPATG 461

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 48/211 (22%), Positives = 79/211 (36%)
 Frame = +1

Query: 256 ARVKAQAAAGQGQWIPVRGVALLLVR*ARRRARSSSLGRSASGPALTSSLPPTTPSSAMS 435
           A   A AA       P R         A   A +++   +A+     ++  P   + A +
Sbjct: 317 AATAATAATAATAATPARAARAATPATAATPATAATAATAATAATAATAATPARAARAAT 376

Query: 436 PRSRRTTPPGCSTSTGRSAAAPAKAPRSARWNAWPV*RAPSLSSSTMPCTTACWPPATAR 615
           P +  T     + +T  +AA PA+A R+A           + ++   P T A    A   
Sbjct: 377 PATAATAATAATAATAATAATPARAARAA-----------TPATPATPATPATPATAATA 425

Query: 616 ACSRCSGAAPTAASSCSAAWPTTWTDATPPPRPSPPAPCSPVSGTRWRTAPVLTAG*LWM 795
           A +  +  A TAA++ +A        AT P         +P +G    TAP  TAG    
Sbjct: 426 ATAATAATAATAATAATA--------ATAPTPARAARAATPATGATPATAP--TAG---T 472

Query: 796 MTFPASS*ASSAPRRGQRAGATSRPFRASQP 888
               A++  ++ P R       + P  A+ P
Sbjct: 473 AATAATAATAATPARASTPATAATPVTAATP 503

 Score = 46.2 bits (108), Expect = 7e-04
 Identities = 45/189 (23%), Positives = 75/189 (38%), Gaps = 5/189 (2%)
 Frame = +1

Query: 337 ARRRARSSSLGRSASGPALTSSLPPTTPSSAMSPRSRRTTPPGCSTSTGRSAAAPAKAPR 516
           A R A  ++    A+      +    TP++A +  +  T     + +T  +AA PA+A R
Sbjct: 164 AARAATPATAATPATPATAARAARAATPATAATAATAATAATAATAATAATAATPARAAR 223

Query: 517 SARWNAWP---V*RAPSLSSSTMPCTTACWPPATARACSRCSGAA-PTAASSCSAAWP-T 681
           +A     P       P+ +++     TA  P   ARA +  + A   TAA+  + A P T
Sbjct: 224 AATPATAPTPATAATPATAATAATAPTAATPARAARAATPATAATLATAATPATPATPAT 283

Query: 682 TWTDATPPPRPSPPAPCSPVSGTRWRTAPVLTAG*LWMMTFPASS*ASSAPRRGQRAGAT 861
             TDAT     +P    +P +     T              PA++  ++       A   
Sbjct: 284 AATDATAATAATPARAATPATPATAATPAT-----------PATAATAATAATAATAATP 332

Query: 862 SRPFRASQP 888
           +R  RA+ P
Sbjct: 333 ARAARAATP 341

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 51/231 (22%), Positives = 81/231 (34%), Gaps = 20/231 (8%)
 Frame = +1

Query: 256 ARVKAQAAAGQGQWIPVRGVALLLVR*ARRRARSSSLGRSASGPALTSSLPPTTPSSAMS 435
           A   A AA       P R         A   A +++   +A+     +     TP++A +
Sbjct: 80  ATTAATAATAATAATPARAARAATPATAATPATAATAATAATAATAETPARAATPATAAT 139

Query: 436 PRSRRTTPPGCSTSTGRSAAAPAKAPRSARWNAWPV*RAPSLSSSTMPCTTACWPPATAR 615
           P +  T     + +T  ++A  A A R+A           + ++   P T A    A   
Sbjct: 140 PATAATPATAATAATAATSATAATAARAAT--------PATAATPATPATAARAARAATP 191

Query: 616 ACSRCSGAAPTAASSCSAAWPTTWTD-------ATPPPRPSPPAPCSPVSGTRWRTAPV- 771
           A +  +  A TAA++ +AA   T          ATP   P+P    +P +     TAP  
Sbjct: 192 ATAATAATAATAATAATAATAATAATPARAARAATPATAPTPATAATPATAATAATAPTA 251

Query: 772 ------------LTAG*LWMMTFPASS*ASSAPRRGQRAGATSRPFRASQP 888
                        TA  L     PA+    +       A   + P RA+ P
Sbjct: 252 ATPARAARAATPATAATLATAATPATPATPATAATDATAATAATPARAATP 302

 Score = 38.9 bits (89), Expect = 0.12
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 6/186 (3%)
 Frame = +1

Query: 343 RRARSSSLGRSASGPALTSSLPPTTPSSAMSPRSRRTTPPGCSTSTGRSAAAPAKAPRSA 522
           R A ++     A+     ++  P T ++A       T     + +T  +AA PA A  +A
Sbjct: 27  RPAAAARAATPATAATPATAATPATAATA------ATEATAATAATPATAATPATAATAA 80

Query: 523 RWNAWPV*RAPSLSSSTMPCTTACWPPATARACSRCSGAAP-TAASSCSAAWPTTWTD-- 693
                      + +++     TA  P   ARA +  + A P TAA++ +AA   T     
Sbjct: 81  -----------TTAATAATAATAATPARAARAATPATAATPATAATAATAATAATAETPA 129

Query: 694 --ATPPPRPSPPAPCSPVSGTRWRTAPV-LTAG*LWMMTFPASS*ASSAPRRGQRAGATS 864
             ATP    +P    +P +     TA    TA        PA++   + P    RA   +
Sbjct: 130 RAATPATAATPATAATPATAATAATAATSATAATAARAATPATAATPATPATAARAARAA 189

Query: 865 RPFRAS 882
            P  A+
Sbjct: 190 TPATAA 195

 Score = 35.8 bits (81), Expect = 1.0
 Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
 Frame = +1

Query: 373 SASGPALTSSLPPTTPSSAMSPRSRRTTPPG-----CSTSTGRSAAAPAKAPRSARWNAW 537
           +A+  A T++   T  ++A   R+ R   P       + +T  +AA  A A   AR  A 
Sbjct: 75  TAATAATTAATAATAATAATPARAARAATPATAATPATAATAATAATAATAETPAR-AAT 133

Query: 538 PV*RAPSLSSSTMPCTTACWPPATARACSRCSGAAPTAASSCSAAWPTTWTDATPPPRPS 717
           P   A   +++T P T A    A   A +  +  A T A++ + A P T   A     P+
Sbjct: 134 PATAATPATAAT-PATAATAATAATSATAATAARAATPATAATPATPATAARAARAATPA 192

Query: 718 PPAPCSPVSGTRWRTAPVLTAG*LWMMTFPASS*ASSAPRRGQRAGATSRPFRAS 882
             A     + T    A   TA        PA +  ++ P         + P  A+
Sbjct: 193 TAA----TAATAATAATAATAATAATAATPARAARAATPATAPTPATAATPATAA 243

 Score = 33.1 bits (74), Expect = 6.5
 Identities = 33/134 (24%), Positives = 52/134 (38%)
 Frame = +1

Query: 487 SAAAPAKAPRSARWNAWPV*RAPSLSSSTMPCTTACWPPATARACSRCSGAAPTAASSCS 666
           +AAA A  P +A   A     A + +++T         PATA   +  + AA TAA++ +
Sbjct: 29  AAAARAATPATAATPATAATPATAATAATEATAATAATPATAATPATAATAATTAATAAT 88

Query: 667 AAWPTTWTDATPPPRPSPPAPCSPVSGTRWRTAPVLTAG*LWMMTFPASS*ASSAPRRGQ 846
           AA  T  T A      +P    +P +     TA              A++  +  P R  
Sbjct: 89  AA--TAATPARAARAATPATAATPATAATAATA--------------ATAATAETPARAA 132

Query: 847 RAGATSRPFRASQP 888
                + P  A+ P
Sbjct: 133 TPATAATPATAATP 146

>ref|NP_821286.1| hypothetical protein [Streptomyces avermitilis MA-4680]
            gi|29603748|dbj|BAC67821.1| hypothetical protein
            [Streptomyces avermitilis MA-4680]
          Length = 844

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 46/140 (32%), Positives = 61/140 (42%), Gaps = 12/140 (8%)
 Frame = +1

Query: 376  ASGPALTSSLPPTT--PSSAMSPRSRRTTPPGCSTSTGRSAAAPAKAPRSARWNAWPV*R 549
            A  P+  +  PP+T  P+   SP+   T PP     T  +  +P   P S+  N+ P   
Sbjct: 704  APAPSTPTKSPPSTSPPTPPSSPKHANTPPPNSPPGTSPTPPSP---PNSSSANSSPTPS 760

Query: 550  APSLSSSTMPCTTACWP-----PATARACSRCSGAAPT----AASSCSAAWPTTWTDATP 702
            A +   S    +T   P     P  A     C+  APT    AASS SA  P     ATP
Sbjct: 761  ATATHPSNSASSTTTTPSPPKSPTPATPPPTCAAPAPTTKEDAASSSSANSPNAGAPATP 820

Query: 703  PP-RPSPPAPCSPVSGTRWR 759
            PP +PS P   SP + T +R
Sbjct: 821  PPAKPSGPNKPSPPTNTEFR 840

 Score = 38.9 bits (89), Expect = 0.12
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
 Frame = +1

Query: 409  PTTPSSAMSPRSRRTTPPGCSTSTGRSAAAPAKAPRSARWNAWPV*RAPSLSSSTMPCTT 588
            P+TP+ +  P +  +T      ST      P+ AP        P    PS + S+ PC+ 
Sbjct: 646  PSTPTDSSKPATTTSTKASTKCST------PSPAP--------PTTSTPSATESSPPCSP 691

Query: 589  ACWPPATARACSRCSGAAPTAASSCSAAWPTTWTDA-----TPPPRPSP---PAPCSPVS 744
                P T    S  + A  T   S  +  P T   +     TPPP   P   P P SP +
Sbjct: 692  TA--PTTTSPSSSPAPAPSTPTKSPPSTSPPTPPSSPKHANTPPPNSPPGTSPTPPSPPN 749

Query: 745  GTRWRTAPVLTAG*LWMMTFPASS*ASS 828
             +   ++P  +A      T P++S +S+
Sbjct: 750  SSSANSSPTPSA----TATHPSNSASST 773

 Score = 38.9 bits (89), Expect = 0.12
 Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 1/113 (0%)
 Frame = +1

Query: 400 SLPPTTPSSAMSPRSRR-TTPPGCSTSTGRSAAAPAKAPRSARWNAWPV*RAPSLSSSTM 576
           +L    P +A SP +   ++ P  +TST  S      +P            AP  +S+  
Sbjct: 634 TLETQLPEAASSPSTPTDSSKPATTTSTKASTKCSTPSP------------APPTTST-- 679

Query: 577 PCTTACWPPATARACSRCSGAAPTAASSCSAAWPTTWTDATPPPRPSPPAPCS 735
           P  T   PP        CS  APT  S  S+  P   T    PP  SPP P S
Sbjct: 680 PSATESSPP--------CSPTAPTTTSPSSSPAPAPSTPTKSPPSTSPPTPPS 724



EST assemble image


clone accession position
1 CM077b06_r AV391736 1 601
2 LC095e08_r AV625619 2 312
3 CM081c12_r AV391883 5 550
4 CM081d09_r AV391921 5 392
5 CL75a10_r AV397051 10 568
6 MX218d03_r BP090071 12 367
7 MX258d04_r BP092732 13 474
8 MX233g09_r BP091102 13 314
9 HC063b08_r AV636706 137 585
10 CM031e08_r AV388373 198 592
11 LC072b10_r AV624045 206 659
12 MX231g12_r BP090968 243 678
13 CM065a01_r AV391127 333 912
14 LC009d05_r AV619516 376 895
15 LC060b08_r AV623188 442 852




Chlamydomonas reinhardtii
Kazusa DNA Research Institute