KCC000832A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000832A_C01 KCC000832A_c01
gttgcacaTAAACATAAAATAAGATAAAGACACGTGCGGAATAGGGCTGTTTTTTGCGTT
GCCTCTTTGCGTTGCACATTTTCACGCACACAGCGACGAGGCGTTGCTCACACAACACCG
TTTCACTCTTGTATCTGCTTAAGCAGAAATAACCGATCTAGCTTAACGGCGGGGGGGCGA
GGCGGGAATACACGGAGGGAATCGCGCAATTTTCTTTCGGGCCTGCAGCGGCAGCAAACA
TGGCTCCCGACCCGGCGGCAGACGACACGCTGGGCAACTCGCTGATCCCGATAGTCAACA
AGCTGCAGGATATCTTCGCGCAGGTGACTGTCGACCTTAAGCTCGACCTCCCTCAAGTCG
CGGTCGTTGGAAGCCAGAGCAGTGGAAAGAGTAGCGTGCTGGAGGCGCTGGTGGGACGAG
ACTTCCTGCCTCGTGGCAATGACATCGTCACGCGGCGGCCGCTGCTGCTGCAGCTGGTGA
AGACAACGCCTGGGCCCACCGGCAGGCCGTCGGAATGGGGCGAGTTCCTGCACGCGCCCG
GGAAGATGTTCTATGACTTCGACCGCATCCGAGATGAAATCCACCAGGAGACGGAGCGTC
TGGTGGGCTACAACAAAAACGTCAGCGACAAGCCCATCCGCCTAAAGATCTTCAGCCCCC
GCGTGCTGTGAGTGGCCCCAGGCTTCTCGCGTGTACCAGTGTTGCTGTGCCGTCATCACT
TGACGCGCAGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000832A_C01 KCC000832A_c01
         (733 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB86118.1| putative dynamin-like protein ADL2 [Oryza sativa...   186  4e-46
dbj|BAB85645.1| dynamin like protein 2b [Arabidopsis thaliana]        181  1e-44
ref|NP_567931.1| dynamin-related protein ADL2 [Arabidopsis thali...   178  9e-44
dbj|BAB85644.1| dynamin like protein 2a [Arabidopsis thaliana]        178  9e-44
ref|NP_565363.1| dynamin-related protein [Arabidopsis thaliana] ...   178  9e-44

>dbj|BAB86118.1| putative dynamin-like protein ADL2 [Oryza sativa (japonica
           cultivar-group)]
          Length = 786

 Score =  186 bits (471), Expect = 4e-46
 Identities = 102/167 (61%), Positives = 119/167 (71%), Gaps = 5/167 (2%)
 Frame = +3

Query: 216 FGPAAAANMAPDPAADDTLGNSLIPIVNKLQDIFAQVTVDLKLDLPQVAVVGSQSSGKSS 395
           +  +A  + A   AA   +G+S+IPIVNKLQDIF+Q+     +DLPQVAVVGSQSSGKSS
Sbjct: 6   YSSSAPPSTATAAAAAAAVGSSVIPIVNKLQDIFSQLGSSSTIDLPQVAVVGSQSSGKSS 65

Query: 396 VLEALVGRDFLPRGNDIVTRRPLLLQLVKTTPGPT-GRPSEWGEFLHAPGKMFYDFDRIR 572
           VLEALVGRDFLPRG+DI TRRPL+LQLV     P      EWGEFLH PG+ FYDF  IR
Sbjct: 66  VLEALVGRDFLPRGSDICTRRPLVLQLVHQPRRPADAEADEWGEFLHLPGRRFYDFREIR 125

Query: 573 DEIHQETERLVGYNKNVSDKPIRLKIFSPRVL*VA----PGFSRVPV 701
            EI  ET+R  G NK VSDK IRLKI+SP VL +     PG ++VPV
Sbjct: 126 REIQAETDREAGGNKGVSDKQIRLKIYSPNVLNITLVDLPGITKVPV 172

>dbj|BAB85645.1| dynamin like protein 2b [Arabidopsis thaliana]
          Length = 780

 Score =  181 bits (458), Expect = 1e-44
 Identities = 104/166 (62%), Positives = 119/166 (71%), Gaps = 6/166 (3%)
 Frame = +3

Query: 222 PAAAANMAPDPAADDTLGNSLIPIVNKLQDIFAQVTVDLKLDLPQVAVVGSQSSGKSSVL 401
           P++A+ + P       LG+S+IPIVNKLQDIFAQ+     + LPQVAVVGSQSSGKSSVL
Sbjct: 8   PSSASAVTP-------LGSSVIPIVNKLQDIFAQLGSQSTIALPQVAVVGSQSSGKSSVL 60

Query: 402 EALVGRDFLPRGNDIVTRRPLLLQLVKTTPGPTGRP-SEWGEFL-HAPGKMFYDFDRIRD 575
           EALVGRDFLPRGNDI TRRPL LQLV+T P   G P  EWGEFL H P +  YDF  IR 
Sbjct: 61  EALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGPDEEWGEFLHHDPVRRIYDFSEIRR 120

Query: 576 EIHQETERLVGYNKNVSDKPIRLKIFSPRVL*VA----PGFSRVPV 701
           EI  ET R+ G NK VSD PI LKIFSP VL ++    PG ++VPV
Sbjct: 121 EIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPV 166

>ref|NP_567931.1| dynamin-related protein ADL2 [Arabidopsis thaliana]
           gi|7430320|pir||T04982 dynamin-like protein ADL2 -
           Arabidopsis thaliana gi|3549667|emb|CAA20578.1|
           Arabidopsis dynamin-like protein ADL2 [Arabidopsis
           thaliana] gi|7270313|emb|CAB80082.1| Arabidopsis
           dynamin-like protein ADL2 [Arabidopsis thaliana]
           gi|19032335|dbj|BAB85643.1| dynamin like protein 2a
           [Arabidopsis thaliana]
          Length = 808

 Score =  178 bits (451), Expect = 9e-44
 Identities = 100/165 (60%), Positives = 116/165 (69%), Gaps = 9/165 (5%)
 Frame = +3

Query: 234 ANMAPDPAADDT----LGNSLIPIVNKLQDIFAQVTVDLKLDLPQVAVVGSQSSGKSSVL 401
           ++  P P++  T    LG+S+IPIVNKLQDIFAQ+     + LPQV VVGSQSSGKSSVL
Sbjct: 17  SSSTPSPSSSTTNAAPLGSSVIPIVNKLQDIFAQLGSQSTIALPQVVVVGSQSSGKSSVL 76

Query: 402 EALVGRDFLPRGNDIVTRRPLLLQLVKT-TPGPTGRPSEWGEFLHAPGKMFYDFDRIRDE 578
           EALVGRDFLPRGNDI TRRPL+LQL++T +    G   EWGEF H P   FYDF  IR E
Sbjct: 77  EALVGRDFLPRGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRRE 136

Query: 579 IHQETERLVGYNKNVSDKPIRLKIFSPRVL*VA----PGFSRVPV 701
           I  ET RLVG NK V+D  IRLKI SP VL +     PG ++VPV
Sbjct: 137 IEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPV 181

>dbj|BAB85644.1| dynamin like protein 2a [Arabidopsis thaliana]
          Length = 808

 Score =  178 bits (451), Expect = 9e-44
 Identities = 100/165 (60%), Positives = 116/165 (69%), Gaps = 9/165 (5%)
 Frame = +3

Query: 234 ANMAPDPAADDT----LGNSLIPIVNKLQDIFAQVTVDLKLDLPQVAVVGSQSSGKSSVL 401
           ++  P P++  T    LG+S+IPIVNKLQDIFAQ+     + LPQV VVGSQSSGKSSVL
Sbjct: 17  SSSTPSPSSSTTNAAPLGSSVIPIVNKLQDIFAQLGSQSTIALPQVVVVGSQSSGKSSVL 76

Query: 402 EALVGRDFLPRGNDIVTRRPLLLQLVKT-TPGPTGRPSEWGEFLHAPGKMFYDFDRIRDE 578
           EALVGRDFLPRGNDI TRRPL+LQL++T +    G   EWGEF H P   FYDF  IR E
Sbjct: 77  EALVGRDFLPRGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRRE 136

Query: 579 IHQETERLVGYNKNVSDKPIRLKIFSPRVL*VA----PGFSRVPV 701
           I  ET RLVG NK V+D  IRLKI SP VL +     PG ++VPV
Sbjct: 137 IEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPV 181

>ref|NP_565363.1| dynamin-related protein [Arabidopsis thaliana]
           gi|20198189|gb|AAD25856.2| dynamin-like protein
           [Arabidopsis thaliana]
          Length = 370

 Score =  178 bits (451), Expect = 9e-44
 Identities = 103/166 (62%), Positives = 118/166 (71%), Gaps = 6/166 (3%)
 Frame = +3

Query: 222 PAAAANMAPDPAADDTLGNSLIPIVNKLQDIFAQVTVDLKLDLPQVAVVGSQSSGKSSVL 401
           P++A+ + P       LG+S+IPIVNKLQDIFAQ+     + LPQVAVVGSQSSGKSSVL
Sbjct: 8   PSSASAVTP-------LGSSVIPIVNKLQDIFAQLGSQSTIALPQVAVVGSQSSGKSSVL 60

Query: 402 EALVGRDFLPRGNDIVTRRPLLLQLVKTTPGPT-GRPSEWGEFL-HAPGKMFYDFDRIRD 575
           EALVGRDFLPRGNDI TRRPL LQLV+T P    G   EWGEFL H P +  YDF  IR 
Sbjct: 61  EALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSEIRR 120

Query: 576 EIHQETERLVGYNKNVSDKPIRLKIFSPRVL*VA----PGFSRVPV 701
           EI  ET R+ G NK VSD PI LKIFSP VL ++    PG ++VPV
Sbjct: 121 EIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPV 166



EST assemble image


clone accession position
1 LCL038e08_r AV628212 1 234
2 CL73c07_r AV396986 9 497
3 MXL072b10_r BP097231 266 617
4 LCL061b04_r AV629567 302 733




Chlamydomonas reinhardtii
Kazusa DNA Research Institute