KCC000830A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000830A_C01 KCC000830A_c01
ctgggtccgcgaacgcgctgggtcttttgttgtttgggccgtgccatgcaagcctgcaac
gccgtcagcaacatgattgaGATCCTGGTCTGCATGGTTGACGGGCCCCAGCCCTTCGAG
GACAGGCGGAAGAGGTGGCCGTAGGTAGGGCTGTGGGGCACATCGCAGAGAAGGCTGCTT
GGGCTGGGGCTTTCTTCTGGGGAGGGTGTGGTGTCGTGGCGTTGTGTTGAGCGTATATAC
AGGCAGCCTAGGCATTTCGCACAAGTGTTCGATGGCGTCACGTAACTTGTGCAGCGCTAT
AGGGCGTTCGGCTGGGCGCTAGGACTACCGGCATACTGGTAGTTTGGGTCTGTTTGCGGC
AAGCGGTAGGACTGTTGGTTGTGTCGGTTGGATAGCGGAGGAGGTCTGCAGTCCGCTGGC
CCGCTCAACTAGGCCTTTGGCGTTGAATGGTCTGTCCTTTGCTTTGATAGCTCAGGCAGT
CATGCCACAAGGCACTGCAGGGCACGAGAAACGCGAAGTGGGACGCAACCccgaattgtg
tactcaagcccgctggtttgattggatgctgccacggtacaagccatgcaatgtaagatg
catctggcct
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000830A_C01 KCC000830A_c01
(610 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_325798.1| hypothetical protein [Neurospora crassa] gi|289... 33 0.037
pir||S13383 hydroxyproline-rich glycoprotein - sorghum gi|228939... 39 0.058
sp|P24152|EXTN_SORBI EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTE... 39 0.058
gb|AAC44888.1| unknown [Nannocystis exedens] 38 0.13
ref|XP_328935.1| predicted protein [Neurospora crassa] gi|289207... 38 0.13
>ref|XP_325798.1| hypothetical protein [Neurospora crassa] gi|28920172|gb|EAA29551.1|
hypothetical protein [Neurospora crassa]
Length = 1050
Score = 33.5 bits (75), Expect(2) = 0.037
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 12/82 (14%)
Frame = -2
Query: 315 PAERPIALHKLRDAIEHLCEMPRLPVYTLNTTPR-HHTLPRRKPQPKQ-----------P 172
PA++P A + + A H P+ P + + P+ H P + QP+Q P
Sbjct: 948 PAQQPQAAYPPQPASHH----PQPPQHQQHQPPQPQHAQPHPQAQPQQAHPQHHQQYFTP 1003
Query: 171 SLRCAPQPYLRPPLPPVLEGLG 106
+R P P PP+PPV G G
Sbjct: 1004 PVRTTPIP--PPPIPPVTSGSG 1023
Score = 25.0 bits (53), Expect(2) = 0.037
Identities = 14/47 (29%), Positives = 20/47 (41%)
Frame = -3
Query: 449 HSTPKA*LSGPADCRPPPLSNRHNQQSYRLPQTDPNYQYAGSPSAQP 309
H P+ A +P P +H+QQ + Q P +Q P QP
Sbjct: 897 HHQPQHQSQQQAHHQPHPPPPQHHQQPQQQQQHPPKHQAQHPPQHQP 943
>pir||S13383 hydroxyproline-rich glycoprotein - sorghum gi|228939|prf||1814452D
Hyp-rich glycoprotein
Length = 283
Score = 38.9 bits (89), Expect = 0.058
Identities = 29/88 (32%), Positives = 32/88 (35%)
Frame = -2
Query: 387 PTQPTVLPLAANRPKLPVCR*S*RPAERPIALHKLRDAIEHLCEMPRLPVYTLNTTPRHH 208
PT PT P A P PV S +P K P PVYT N P
Sbjct: 129 PTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTPK-----------PTPPVYTPNPKPPVT 177
Query: 207 TLPRRKPQPKQPSLRCAPQPYLRPPLPP 124
P P PK P+ + P Y P PP
Sbjct: 178 KPPTHTPSPKPPTSKPTPPVYTPSPKPP 205
>sp|P24152|EXTN_SORBI EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTEIN)
gi|21627|emb|CAA39485.1| hydroxyproline-rich
glycoprotein [Sorghum bicolor]
Length = 283
Score = 38.9 bits (89), Expect = 0.058
Identities = 29/88 (32%), Positives = 32/88 (35%)
Frame = -2
Query: 387 PTQPTVLPLAANRPKLPVCR*S*RPAERPIALHKLRDAIEHLCEMPRLPVYTLNTTPRHH 208
PT PT P A P PV S +P K P PVYT N P
Sbjct: 129 PTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTPK-----------PTPPVYTPNPKPPVT 177
Query: 207 TLPRRKPQPKQPSLRCAPQPYLRPPLPP 124
P P PK P+ + P Y P PP
Sbjct: 178 KPPTHTPSPKPPTSKPTPPVYTPSPKPP 205
>gb|AAC44888.1| unknown [Nannocystis exedens]
Length = 290
Score = 37.7 bits (86), Expect = 0.13
Identities = 28/86 (32%), Positives = 41/86 (47%)
Frame = -1
Query: 271 RTLVRNA*AACIYAQHNATTPHPPQKKAPAQAAFSAMCPTALPTATSSACPRRAGARQPC 92
R L NA AA + +T+P +++ +A C PT ++++ P +R PC
Sbjct: 11 RGLRENAPAAPYAWRSPSTSPSSASRRSSPSSAVRWPCSRTPPTWSATSPP----SRSPC 66
Query: 91 RPGSQSCC*RRCRLAWHGPNNKRPSA 14
P S C R CR+A G RPSA
Sbjct: 67 SPPSSRCV-RPCRVAPTGSPAPRPSA 91
>ref|XP_328935.1| predicted protein [Neurospora crassa] gi|28920723|gb|EAA30083.1|
predicted protein [Neurospora crassa]
Length = 454
Score = 37.7 bits (86), Expect = 0.13
Identities = 25/76 (32%), Positives = 35/76 (45%), Gaps = 3/76 (3%)
Frame = -3
Query: 401 PPLSNRHNQQSYRLPQTDPNYQYAGSPSAQPNAL*RCTSYVTPSNTCAKCLGCLYIRSTQ 222
P S +HN PNY+Y+ SP+ + + Y PS + LG + T+
Sbjct: 134 PARSTKHNDDY-------PNYKYSSSPADSKH---KSDVYTRPSVVLTQTLGVPHEDKTR 183
Query: 221 R---HDTTPSPEESPS 183
R HD PSP+ SPS
Sbjct: 184 RRSPHDREPSPKRSPS 199
EST assemble image
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clone |
accession |
position |
1 |
CL72h07_r |
AV397029 |
1 |
490 |
2 |
LCL059a03_r |
AV629451 |
185 |
610 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute