Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000828A_C01 KCC000828A_c01
(755 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil... 51 2e-05
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 50 5e-05
pir||T02345 hypothetical protein KIAA0324 - human (fragment) gi|... 50 5e-05
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 50 5e-05
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 50 5e-05
>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
melanogaster]
Length = 1225
Score = 51.2 bits (121), Expect = 2e-05
Identities = 51/193 (26%), Positives = 70/193 (35%), Gaps = 1/193 (0%)
Frame = +2
Query: 137 TAPCSGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAA-PAATKQR 313
T+ C+ ++T + + + + T + + T RP PR P + P T R
Sbjct: 937 TSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPR 996
Query: 314 SRHSPRPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLIFYRH*RLTA 493
S + S RPT TT+ R + S C + ST+ TTSRP T
Sbjct: 997 S--TTTTSTSRPT--TTTPRSTTKTSTCAPTTTTPRSTTTTTTSRP------------TT 1040
Query: 494 GNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRRQTRRLCRP*TARRTRRRMQAPC 673
ST TSR ++ RS+ C R T T RP T P
Sbjct: 1041 TTPRSTTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCPT 1100
Query: 674 TRPHRVRRRHATT 712
T P R TT
Sbjct: 1101 TTPSASPTRTTTT 1113
Score = 49.3 bits (116), Expect = 7e-05
Identities = 66/223 (29%), Positives = 80/223 (35%), Gaps = 13/223 (5%)
Frame = +2
Query: 125 TLRVTAPCSGSSTQGLARSQLPSWLASLTACPCSFSQL-TLRPAAALPRRQQHPQAA-PA 298
T T P STQG + P A T P S + T RP PR + P
Sbjct: 195 TQETTTPTPTCSTQGTQTT--PCTCAQTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPT 252
Query: 299 ATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLIFYRH 478
T RS + + RPT TT+ R + S C + ST+ TTSRP
Sbjct: 253 TTTPRS--TTTTTTRRPT--TTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTP---- 304
Query: 479 *RLTAGNSL---------STCNACTSRCRLSSSR-SSWFKCRCRQRRLTATRRQTRRLCR 628
R T S ST TSR ++ R ++ C +R T T R T C
Sbjct: 305 -RCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTTCTRRPTTTTPRSTTTTCT 363
Query: 629 P*TARRTRRRMQAPCTR-PHRVRRRHATTTSRSVSRSSAATTP 754
T R CT P R TTTS S TTP
Sbjct: 364 SGPTTTTPRSTTTTCTSGPTTTTPRSTTTTSTS---GPTTTTP 403
Score = 44.3 bits (103), Expect = 0.002
Identities = 62/220 (28%), Positives = 79/220 (35%), Gaps = 14/220 (6%)
Frame = +2
Query: 137 TAPCSGSSTQGLARSQLPSWLASLTACPCSFSQ------LTLRPAAALPRRQQHPQA-AP 295
T C+ T RS + T+CP + + T P PR AP
Sbjct: 887 TTTCTSCPTTTTPRSTT----TTCTSCPTTTTPRSTTTTCTSGPTTTTPRSTTKTSTCAP 942
Query: 296 AATKQRSR---HSPRPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLI 466
T RS + RP+ P STT++ S P + P S STS TT+ PR
Sbjct: 943 TTTTPRSTTTTSTSRPTTTTPR-STTTTTTSRPTTTTPRSTTTP-STSRPTTTTPRSTTT 1000
Query: 467 FYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRRQTRRLCRP*TARR 646
R T ST T ++ RS+ R T T RP T
Sbjct: 1001 TSTS-RPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTTT-- 1057
Query: 647 TRRRMQAPCT-RPHRVRRRHATTTSRS---VSRSSAATTP 754
T R PCT RP R TTT+ S + + TTP
Sbjct: 1058 TPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTP 1097
Score = 36.6 bits (83), Expect = 0.44
Identities = 53/221 (23%), Positives = 74/221 (32%), Gaps = 22/221 (9%)
Frame = +2
Query: 155 SSTQGLARSQLPSWLASLTACP-----------CSFSQLTLRPAAALPRRQQHPQAA-PA 298
+ST G + S + T+CP C+ T P + P P
Sbjct: 841 TSTSGPTTTTPRSTTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTTTPR 900
Query: 299 ATKQRSRHSPRPSAYRPTFST-------TSSRKSNPRSRCPCSNVVSLSTSGATTSRPRV 457
+T P + R T +T T+ R + S C + ST+ +TSRP
Sbjct: 901 STTTTCTSCPTTTTPRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRP-- 958
Query: 458 RLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRRQTRRLCRP*T 637
T ST TSR ++ RS+ R T T RP T
Sbjct: 959 ----------TTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTT 1008
Query: 638 A---RRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAATT 751
T+ AP T R TTTSR + + +TT
Sbjct: 1009 TTPRSTTKTSTCAPTTT--TPRSTTTTTTSRPTTTTPRSTT 1047
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 49.7 bits (117), Expect = 5e-05
Identities = 61/167 (36%), Positives = 77/167 (45%), Gaps = 6/167 (3%)
Frame = +2
Query: 266 RRQQHPQAAPAATKQR----SRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSLS-T 427
RR+Q ++ T++R HS P+ R S TSSR+ RSR P S S S T
Sbjct: 1799 RRRQRSRSRSRVTRRRRGGSGYHSRSPA--RQESSRTSSRRRRGRSRTPPTSRKRSRSRT 1856
Query: 428 SGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRR 607
S A R R R H R + L SR R S SR+S R + R + TRR
Sbjct: 1857 SPAPWKRSRSRASPATHRRSRSRTPL------ISR-RRSRSRTSPVSRRRSRSRTSVTRR 1909
Query: 608 QTRRLCRP*TARRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAAT 748
++R P + RR+R R P TR R R R TT RS SR+ T
Sbjct: 1910 RSRSRASPVSRRRSRSR-TPPVTR-RRSRSRTPTTRRRSRSRTPPVT 1954
Score = 45.8 bits (107), Expect = 7e-04
Identities = 52/178 (29%), Positives = 70/178 (39%), Gaps = 1/178 (0%)
Frame = +2
Query: 218 PCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRC 397
P + + R + A RR + P +++RSR P + R + S TS + RSR
Sbjct: 1858 PAPWKRSRSRASPATHRRSR--SRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRA 1915
Query: 398 -PCSNVVSLSTSGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCR 574
P S S S + T R S T+R R S + R
Sbjct: 1916 SPVSRRRSRSRTPPVTRR------------------RSRSRTPTTRRRSRSRTPPVTRRR 1957
Query: 575 CRQRRLTATRRQTRRLCRP*TARRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAAT 748
R R TRR++R P T RR+R R +P TR R T RS SR+S T
Sbjct: 1958 SRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVTRRRSRSRTSPVTRRRSRSRTSPVT 2014
Score = 38.1 bits (87), Expect = 0.15
Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 23/228 (10%)
Frame = +2
Query: 134 VTAPCSGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAAPAATKQR 313
V P S T+ + + P L P S S + P+ + +H ++P + K
Sbjct: 391 VNPPSEASPTRDRSPPKSPEKL------PQSSSSESSPPSPQPTKVSRHASSSPESPKP- 443
Query: 314 SRHSPRPSAYRPTFST-TSSRKSNPRSRCPCSNV------VSLSTSGATTSRPRVRLIFY 472
+P P ++R S+ TS +S+ R++ S+ + S S AT R R R
Sbjct: 444 ---APAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSR---- 496
Query: 473 RH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATR---------RQTRRLC 625
G+S S + + R S S W + R QRR + R T+R
Sbjct: 497 SRTPTKRGHSRSR----SPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRG 552
Query: 626 RP*TARRTRRRMQAPCTR-------PHRVRRRHATTTSRSVSRSSAAT 748
R +ARR R ++P TR P R R + T +R SRS T
Sbjct: 553 RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Score = 36.6 bits (83), Expect = 0.44
Identities = 59/198 (29%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Frame = +2
Query: 245 RPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSL 421
R ++ RR+ +A+P + ++RSR P R + S T + + RSR P + S
Sbjct: 1901 RSRTSVTRRRSRSRASPVS-RRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR 1959
Query: 422 STSGATT---SRPRVRLIFYRH*R-----LTAGNSLSTCNACTSRCRLSSSRSSWFKCRC 577
S + T SR R I R R +T S S + T R R S S + R
Sbjct: 1960 SRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTSPVTRRRS 2018
Query: 578 RQRRLTATRRQTRRLC----------RP*TARRTRRRMQAPCTR---------PHRVRRR 700
R R A RR++R R A R R R + P T P +RRR
Sbjct: 2019 RSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRR 2078
Query: 701 HATTTSRSVSRSSAATTP 754
A+ +S SRS AT P
Sbjct: 2079 SASGSSSDRSRS--ATPP 2094
Score = 33.9 bits (76), Expect = 2.8
Identities = 63/219 (28%), Positives = 89/219 (39%), Gaps = 18/219 (8%)
Frame = +2
Query: 149 SGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSP 328
SGSS++G R P +S + P P + RR P K +SR P
Sbjct: 1638 SGSSSKG--RGPSPEGSSSTESSP------EHPPKSRTARRGSRSSPEP---KTKSRTPP 1686
Query: 329 RPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLIFYRH*RLTAGNSLS 508
R + R + T + + RSR S S+S T SR R H R + +S
Sbjct: 1687 RRRSSRSSPELTRKARLSRRSR-------SASSSPETRSRTPPR-----HRRSPSVSSPE 1734
Query: 509 TCNAC-TSRCRLSSS-----------RSSWFKCRCRQRRLTATRRQ----TRRLCRP*TA 640
+SR R S+S RS K R QR + +RR+ TRR R ++
Sbjct: 1735 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSS 1794
Query: 641 RRTRRRMQAPCTRPHRVRRRHATT--TSRSVSRSSAATT 751
+ T RR Q +R RRR + SRS +R ++ T
Sbjct: 1795 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRT 1833
>pir||T02345 hypothetical protein KIAA0324 - human (fragment)
gi|2996650|gb|AAC08453.1| KIAA0324 [Homo sapiens]
Length = 1791
Score = 49.7 bits (117), Expect = 5e-05
Identities = 61/167 (36%), Positives = 77/167 (45%), Gaps = 6/167 (3%)
Frame = +2
Query: 266 RRQQHPQAAPAATKQR----SRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSLS-T 427
RR+Q ++ T++R HS P+ R S TSSR+ RSR P S S S T
Sbjct: 831 RRRQRSRSRSRVTRRRRGGSGYHSRSPA--RQESSRTSSRRRRGRSRTPPTSRKRSRSRT 888
Query: 428 SGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRR 607
S A R R R H R + L SR R S SR+S R + R + TRR
Sbjct: 889 SPAPWKRSRSRASPATHRRSRSRTPL------ISR-RRSRSRTSPVSRRRSRSRTSVTRR 941
Query: 608 QTRRLCRP*TARRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAAT 748
++R P + RR+R R P TR R R R TT RS SR+ T
Sbjct: 942 RSRSRASPVSRRRSRSR-TPPVTR-RRSRSRTPTTRRRSRSRTPPVT 986
Score = 45.8 bits (107), Expect = 7e-04
Identities = 52/178 (29%), Positives = 70/178 (39%), Gaps = 1/178 (0%)
Frame = +2
Query: 218 PCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRC 397
P + + R + A RR + P +++RSR P + R + S TS + RSR
Sbjct: 890 PAPWKRSRSRASPATHRRSR--SRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRA 947
Query: 398 -PCSNVVSLSTSGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCR 574
P S S S + T R S T+R R S + R
Sbjct: 948 SPVSRRRSRSRTPPVTRR------------------RSRSRTPTTRRRSRSRTPPVTRRR 989
Query: 575 CRQRRLTATRRQTRRLCRP*TARRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAAT 748
R R TRR++R P T RR+R R +P TR R T RS SR+S T
Sbjct: 990 SRSRTPPVTRRRSRSRTSPITRRRSRSR-TSPVTRRRSRSRTSPVTRRRSRSRTSPVT 1046
Score = 39.7 bits (91), Expect = 0.052
Identities = 54/179 (30%), Positives = 72/179 (40%), Gaps = 19/179 (10%)
Frame = +2
Query: 266 RRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTT---SSRKSNPRSRCPCSNVVSLSTSGA 436
R++ + +PA K RSR P+ +R + S T S R+S R+ P S S S +
Sbjct: 881 RKRSRSRTSPAPWK-RSRSRASPATHRRSRSRTPLISRRRSRSRTS-PVSRRRSRSRTSV 938
Query: 437 TTSRPRVRLIFYRH*RLTAGNS-----LSTCNACTSRCRLSSSRSSWFKCRCRQRRLTAT 601
T R R R R + S T+R R S + R R R T
Sbjct: 939 TRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVT 998
Query: 602 RRQTRRLCRP*TARR--------TRRRMQ---APCTRPHRVRRRHATTTSRSVSRSSAA 745
RR++R P T RR TRRR + +P TR R T RS SR+ A
Sbjct: 999 RRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPA 1057
Score = 36.6 bits (83), Expect = 0.44
Identities = 59/198 (29%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Frame = +2
Query: 245 RPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSL 421
R ++ RR+ +A+P + ++RSR P R + S T + + RSR P + S
Sbjct: 933 RSRTSVTRRRSRSRASPVS-RRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR 991
Query: 422 STSGATT---SRPRVRLIFYRH*R-----LTAGNSLSTCNACTSRCRLSSSRSSWFKCRC 577
S + T SR R I R R +T S S + T R R S S + R
Sbjct: 992 SRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTSPVTRRRS 1050
Query: 578 RQRRLTATRRQTRRLC----------RP*TARRTRRRMQAPCTR---------PHRVRRR 700
R R A RR++R R A R R R + P T P +RRR
Sbjct: 1051 RSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRR 1110
Query: 701 HATTTSRSVSRSSAATTP 754
A+ +S SRS AT P
Sbjct: 1111 SASGSSSDRSRS--ATPP 1126
Score = 33.9 bits (76), Expect = 2.8
Identities = 63/219 (28%), Positives = 89/219 (39%), Gaps = 18/219 (8%)
Frame = +2
Query: 149 SGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSP 328
SGSS++G R P +S + P P + RR P K +SR P
Sbjct: 670 SGSSSKG--RGPSPEGSSSTESSP------EHPPKSRTARRGSRSSPEP---KTKSRTPP 718
Query: 329 RPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLIFYRH*RLTAGNSLS 508
R + R + T + + RSR S S+S T SR R H R + +S
Sbjct: 719 RRRSSRSSPELTRKARLSRRSR-------SASSSPETRSRTPPR-----HRRSPSVSSPE 766
Query: 509 TCNAC-TSRCRLSSS-----------RSSWFKCRCRQRRLTATRRQ----TRRLCRP*TA 640
+SR R S+S RS K R QR + +RR+ TRR R ++
Sbjct: 767 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSS 826
Query: 641 RRTRRRMQAPCTRPHRVRRRHATT--TSRSVSRSSAATT 751
+ T RR Q +R RRR + SRS +R ++ T
Sbjct: 827 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRT 865
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 49.7 bits (117), Expect = 5e-05
Identities = 61/167 (36%), Positives = 77/167 (45%), Gaps = 6/167 (3%)
Frame = +2
Query: 266 RRQQHPQAAPAATKQR----SRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSLS-T 427
RR+Q ++ T++R HS P+ R S TSSR+ RSR P S S S T
Sbjct: 322 RRRQRSRSRSRVTRRRRGGSGYHSRSPA--RQESSRTSSRRRRGRSRTPPTSRKRSRSRT 379
Query: 428 SGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRR 607
S A R R R H R + L SR R S SR+S R + R + TRR
Sbjct: 380 SPAPWKRSRSRASPATHRRSRSRTPL------ISR-RRSRSRTSPVSRRRSRSRTSVTRR 432
Query: 608 QTRRLCRP*TARRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAAT 748
++R P + RR+R R P TR R R R TT RS SR+ T
Sbjct: 433 RSRSRASPVSRRRSRSR-TPPVTR-RRSRSRTPTTRRRSRSRTPPVT 477
Score = 40.4 bits (93), Expect = 0.030
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 10/189 (5%)
Frame = +2
Query: 218 PCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRC 397
P + + R + A RR + P +++RSR P + R + S TS + RSR
Sbjct: 381 PAPWKRSRSRASPATHRRSR--SRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRA 438
Query: 398 -PCSNVVSLS-TSGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKC 571
P S S S T T R R R T S S T R R S +
Sbjct: 439 SPVSRRRSRSRTPPVTRRRSRSRT------PTTRRRSRSRTPPVTRR-RSRSRTPPVTRR 491
Query: 572 RCRQRRLTATRRQTRRLCRP*TARR--------TRRRMQAPCTRPHRVRRRHATTTSRSV 727
R R R TRR++R P T RR TRRR ++ T P RRR + T ++
Sbjct: 492 RSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSR-TSP-VTRRRSRSRTPPAI 549
Query: 728 SRSSAATTP 754
R S + TP
Sbjct: 550 RRRSRSRTP 558
Score = 36.6 bits (83), Expect = 0.44
Identities = 59/198 (29%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Frame = +2
Query: 245 RPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSL 421
R ++ RR+ +A+P + ++RSR P R + S T + + RSR P + S
Sbjct: 424 RSRTSVTRRRSRSRASPVS-RRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR 482
Query: 422 STSGATT---SRPRVRLIFYRH*R-----LTAGNSLSTCNACTSRCRLSSSRSSWFKCRC 577
S + T SR R I R R +T S S + T R R S S + R
Sbjct: 483 SRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTSPVTRRRS 541
Query: 578 RQRRLTATRRQTRRLC----------RP*TARRTRRRMQAPCTR---------PHRVRRR 700
R R A RR++R R A R R R + P T P +RRR
Sbjct: 542 RSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRR 601
Query: 701 HATTTSRSVSRSSAATTP 754
A+ +S SRS AT P
Sbjct: 602 SASGSSSDRSRS--ATPP 617
Score = 33.9 bits (76), Expect = 2.8
Identities = 63/219 (28%), Positives = 89/219 (39%), Gaps = 18/219 (8%)
Frame = +2
Query: 149 SGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSP 328
SGSS++G R P +S + P P + RR P K +SR P
Sbjct: 161 SGSSSKG--RGPSPEGSSSTESSP------EHPPKSRTARRGSRSSPEP---KTKSRTPP 209
Query: 329 RPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLIFYRH*RLTAGNSLS 508
R + R + T + + RSR S S+S T SR R H R + +S
Sbjct: 210 RRRSSRSSPELTRKARLSRRSR-------SASSSPETRSRTPPR-----HRRSPSVSSPE 257
Query: 509 TCNAC-TSRCRLSSS-----------RSSWFKCRCRQRRLTATRRQ----TRRLCRP*TA 640
+SR R S+S RS K R QR + +RR+ TRR R ++
Sbjct: 258 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSS 317
Query: 641 RRTRRRMQAPCTRPHRVRRRHATT--TSRSVSRSSAATT 751
+ T RR Q +R RRR + SRS +R ++ T
Sbjct: 318 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRT 356
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 49.7 bits (117), Expect = 5e-05
Identities = 61/167 (36%), Positives = 77/167 (45%), Gaps = 6/167 (3%)
Frame = +2
Query: 266 RRQQHPQAAPAATKQR----SRHSPRPSAYRPTFSTTSSRKSNPRSRCP-CSNVVSLS-T 427
RR+Q ++ T++R HS P+ R S TSSR+ RSR P S S S T
Sbjct: 1799 RRRQRSRSRSRVTRRRRGGSGYHSRSPA--RQESSRTSSRRRRGRSRTPPTSRKRSRSRT 1856
Query: 428 SGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATRR 607
S A R R R H R + L SR R S SR+S R + R + TRR
Sbjct: 1857 SPAPWKRSRSRASPATHRRSRSRTPL------ISR-RRSRSRTSPVSRRRSRSRTSVTRR 1909
Query: 608 QTRRLCRP*TARRTRRRMQAPCTRPHRVRRRHATTTSRSVSRSSAAT 748
++R P + RR+R R P TR R R R TT RS SR+ T
Sbjct: 1910 RSRSRASPVSRRRSRSR-TPPVTR-RRSRSRTPTTRRRSRSRTPPVT 1954
Score = 38.1 bits (87), Expect = 0.15
Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 23/228 (10%)
Frame = +2
Query: 134 VTAPCSGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAAPAATKQR 313
V P S T+ + + P L P S S + P+ + +H ++P + K
Sbjct: 391 VNPPSEASPTRDRSPPKSPEKL------PQSSSSESSPPSPQPTKVSRHASSSPESPKP- 443
Query: 314 SRHSPRPSAYRPTFST-TSSRKSNPRSRCPCSNV------VSLSTSGATTSRPRVRLIFY 472
+P P ++R S+ TS +S+ R++ S+ + S S AT R R R
Sbjct: 444 ---APAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSR---- 496
Query: 473 RH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKCRCRQRRLTATR---------RQTRRLC 625
G+S S + + R S S W + R QRR + R T+R
Sbjct: 497 SRTPTKRGHSRSR----SPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRG 552
Query: 626 RP*TARRTRRRMQAPCTR-------PHRVRRRHATTTSRSVSRSSAAT 748
R +ARR R ++P TR P R R + T +R SRS T
Sbjct: 553 RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Score = 37.7 bits (86), Expect = 0.20
Identities = 54/183 (29%), Positives = 72/183 (38%), Gaps = 10/183 (5%)
Frame = +2
Query: 218 PCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSPRPSAYRPTFSTTSSRKSNPRSRC 397
P + + R + A RR + P +++RSR P + R + S TS + RSR
Sbjct: 1858 PAPWKRSRSRASPATHRRSR--SRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRA 1915
Query: 398 -PCSNVVSLS-TSGATTSRPRVRLIFYRH*RLTAGNSLSTCNACTSRCRLSSSRSSWFKC 571
P S S S T T R R R T S S T R R S +
Sbjct: 1916 SPVSRRRSRSRTPPVTRRRSRSRT------PTTRRRSRSRTPPVTRR-RSRSRTPPVTRR 1968
Query: 572 RCRQRRLTATRRQTRRLCRP*TARR--------TRRRMQAPCTRPHRVRRRHATTTSRSV 727
R R R TRR++R P T RR TRRR ++ + R R R T ++
Sbjct: 1969 RSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAQDQ 2028
Query: 728 SRS 736
RS
Sbjct: 2029 PRS 2031
Score = 33.9 bits (76), Expect = 2.8
Identities = 63/219 (28%), Positives = 89/219 (39%), Gaps = 18/219 (8%)
Frame = +2
Query: 149 SGSSTQGLARSQLPSWLASLTACPCSFSQLTLRPAAALPRRQQHPQAAPAATKQRSRHSP 328
SGSS++G R P +S + P P + RR P K +SR P
Sbjct: 1638 SGSSSKG--RGPSPEGSSSTESSP------EHPPKSRTARRGSRSSPEP---KTKSRTPP 1686
Query: 329 RPSAYRPTFSTTSSRKSNPRSRCPCSNVVSLSTSGATTSRPRVRLIFYRH*RLTAGNSLS 508
R + R + T + + RSR S S+S T SR R H R + +S
Sbjct: 1687 RRRSSRSSPELTRKARLSRRSR-------SASSSPETRSRTPPR-----HRRSPSVSSPE 1734
Query: 509 TCNAC-TSRCRLSSS-----------RSSWFKCRCRQRRLTATRRQ----TRRLCRP*TA 640
+SR R S+S RS K R QR + +RR+ TRR R ++
Sbjct: 1735 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSS 1794
Query: 641 RRTRRRMQAPCTRPHRVRRRHATT--TSRSVSRSSAATT 751
+ T RR Q +R RRR + SRS +R ++ T
Sbjct: 1795 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRT 1833
