KCC000819A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000819A_C01 KCC000819A_c01
tagcgtatagttctagagcatacatacgttatGTACTACCTGCCGGCATTGATACAAAGC
TTTTTGGGCCCTGCAGTTTTTTAAGCACCAGCCACAACGTGAAACGCTATCTGACTGCAA
ACCCAAATACATGCAGGCTATCTGACGCACTAATCGTGCAAAGAAGCAACTATCAACTGA
GCCAGAGGACACGCCCGCCATCTCGCTCCAAACGCCCCGTCGTCTCGTGGACCATGGGCA
GGCTCAAATGCTAGCTCGAGCACATCTTTAATAAGAACCGATATAAAATGCGCCTGCAAG
TGGTGCTGCTGACCGTGGCGAGCATCGCGGCACTCGCTAGCTTGCAGCCCGTCCACAGCA
CGTTTGTCTTCGCTTCCTACACCAACTGGGCTCGACAGTGTCTAGGGGGCCCAAGCGATG
GAGTATGTGGCCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000819A_C01 KCC000819A_c01
         (434 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_293838.2| similar to proline-rich protein [Homo sapiens]        32  1.5
ref|ZP_00093794.1| hypothetical protein [Novosphingobium aromati...    32  2.0
ref|XP_330019.1| hypothetical protein ( hypothetical protein B14...    31  4.5
ref|NP_015465.1| Vps66p [Saccharomyces cerevisiae] gi|2133031|pi...    30  7.6
ref|XP_353256.1| hypothetical protein XP_353255 [Homo sapiens]         30  7.6

>ref|XP_293838.2| similar to proline-rich protein [Homo sapiens]
          Length = 331

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 25/70 (35%), Positives = 31/70 (43%), Gaps = 2/70 (2%)
 Frame = +1

Query: 190 HARHLAPNAPSSRGPWAGSNASSSTSLIRTDIKCACK--WCC*PWRASRHSLACSPSTAR 363
           HAR L      +     G   SSS  L R    CAC+  W C    ASR S++ S   + 
Sbjct: 83  HARDLDSTWQRAAVQRTGFVRSSSAPLSRASEGCACQGTWVCEAAGASRSSISASSPFSP 142

Query: 364 LSSLPTPTGL 393
           L SL + T L
Sbjct: 143 LESLGSSTWL 152

>ref|ZP_00093794.1| hypothetical protein [Novosphingobium aromaticivorans]
          Length = 425

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 23/70 (32%), Positives = 29/70 (40%)
 Frame = +1

Query: 193 ARHLAPNAPSSRGPWAGSNASSSTSLIRTDIKCACKWCC*PWRASRHSLACSPSTARLSS 372
           A  L+ +  S+R   A S A    +  R    C C W   PW  S  S     S AR + 
Sbjct: 34  AIRLSASTSSTRSACARSMAMRCPTSSRVGTSCPCSWRSHPWAGSPIS-----SRARTAV 88

Query: 373 LPTPTGLDSV 402
           LP P  L +V
Sbjct: 89  LPGPDTLPAV 98

>ref|XP_330019.1| hypothetical protein ( hypothetical protein B14D6.500 [imported] -
           Neurospora crassa ) gi|11289084|pir||T49498 hypothetical
           protein B14D6.500 [imported] - Neurospora crassa
           gi|28925398|gb|EAA34455.1| hypothetical protein (
           hypothetical protein B14D6.500 [imported] - Neurospora
           crassa )
          Length = 129

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -3

Query: 294 GAFYIGSY*RC-ARASI*ACPWSTR---RRGVWS 205
           G F++GS   C ARASI  CPW +     +G WS
Sbjct: 80  GEFHVGSAVSCSARASISTCPWQSNTLGHQGCWS 113

>ref|NP_015465.1| Vps66p [Saccharomyces cerevisiae] gi|2133031|pir||S69028 probable
           membrane protein YPR139c - yeast (Saccharomyces
           cerevisiae) gi|1066491|gb|AAB68279.1| Ypr139cp
           [Saccharomyces cerevisiae]
          Length = 300

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 9   SSRAYIRYVLPAGIDTKLFG-PCSFLSTSHNVKRYLTANPNTCRLSDALIVQRSNYQLSQ 185
           S R +I ++L  G+D KL+G   + LS   N   ++ A   +C     L    +  +L +
Sbjct: 132 SIREFINFILAGGLDIKLYGHEVAELSQLGNTVNFMFAEGTSCNGKSVLPFSITGKKLKE 191

Query: 186 RTRPPSRSKRPVVSWT 233
              P   +  P ++ T
Sbjct: 192 FIDPSITTMNPAMAKT 207

>ref|XP_353256.1| hypothetical protein XP_353255 [Homo sapiens]
          Length = 218

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 411 GPLDTVEPSWCRKRRQTCCGRAAS*RVPRCSPRSAAP 301
           GP      S C  R   CCG A +  VP  SPR A+P
Sbjct: 122 GPAGLTHKSACVGRMGHCCGSAGN--VPELSPRPASP 156



EST assemble image


clone accession position
1 CL70f10_r AV396865 1 303
2 LCL072a03_r AV630048 33 302
3 LCL060b01_r AV629512 33 435




Chlamydomonas reinhardtii
Kazusa DNA Research Institute