KCC000813A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000813A_C01 KCC000813A_c01
acttcttacctttgacgaCGCGTTCAAACGAGCTGGTGTGGTGCCGCTTTATAATAAGCT
TTCCACTCGTTAGTTCATGTTGACCAACTTATCAAAACAAGATGTGTTAAATACAGCTCT
TCGCGGGGCGATGATCCGGTCAGCCCCGCGGTCGCACATGTCTAGCAAAGTGAGCAAATG
AGCCGGCCAACGAGCAGGCAGTCAGAAAGCCGGCCCCAGACGGTTGAGGCCCAGCCTGGT
GCGGGGTCTTGGCAGACGGTCCCGTCACCAGCGCGGCAGGCATCGAAAAATGGCAGTCGC
CCAGCAACGCGCGAGGCTCCAAACACCGCCAGGGGGGACGGGGAGACCCTGGGCGTCGTA
CCTTCATGCCCTGGGAGGCTAACGGATGCTTACGACGTCCAGAAACCCGTGGGGAAAGGC
GGCTATGCGGTGGTCTACAAGGGCATCCGCCGGGACGACGGTCGCGTGGTGGTCGTGAAG
AAGGTCGAGATCTTTGAGATGAGCGCCAAGAAGCGCGATCGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000813A_C01 KCC000813A_c01
         (523 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ64687.1| NIMA-related kinase 6 [Chlamydomonas reinhardtii]      227  8e-59
pir||T23534 hypothetical protein K09B11.1 - Caenorhabditis elegans     48  7e-05
ref|NP_502587.2| Pelle/Interleukin receptor associated Kinase (5...    48  7e-05
dbj|BAB93338.1| OJ1117_G01.23 [Oryza sativa (japonica cultivar-g...    46  3e-04
gb|AAQ64684.1| NIMA-related kinase 3 [Chlamydomonas reinhardtii]       43  0.003

>gb|AAQ64687.1| NIMA-related kinase 6 [Chlamydomonas reinhardtii]
          Length = 855

 Score =  227 bits (578), Expect = 8e-59
 Identities = 113/115 (98%), Positives = 113/115 (98%)
 Frame = +1

Query: 178 MSRPTSRQSESRPQTVEAQPGAGSWQTVPSPARQASKNGSRPATREAPNTARGDGETLGV 357
           MSRPTSRQSESRPQTVEAQPGAGS QTVPSPARQASKNGSRPATREAPNTARGDGETLGV
Sbjct: 1   MSRPTSRQSESRPQTVEAQPGAGSLQTVPSPARQASKNGSRPATREAPNTARGDGETLGV 60

Query: 358 VPSCPGRLTDAYDVQKPVGKGGYAVVYKGIRRDDGRVVVVKKVEIFEMSAKKRDR 522
           VPSCPGRLTDAYDVQKPVGKGGYAVVYKGIRRDDGRVV VKKVEIFEMSAKKRDR
Sbjct: 61  VPSCPGRLTDAYDVQKPVGKGGYAVVYKGIRRDDGRVVAVKKVEIFEMSAKKRDR 115

>pir||T23534 hypothetical protein K09B11.1 - Caenorhabditis elegans
          Length = 472

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 36/106 (33%), Positives = 51/106 (47%)
 Frame = +1

Query: 169 SEQMSRPTSRQSESRPQTVEAQPGAGSWQTVPSPARQASKNGSRPATREAPNTARGDGET 348
           S+QM +P   QS SR +  E +      ++ PSPA  A+   SR  T +    A     T
Sbjct: 106 SKQMVQPPGSQSASRLKKTEIK------ESSPSPAAAAASQLSRSNTDDTLRVAIEG--T 157

Query: 349 LGVVPSCPGRLTDAYDVQKPVGKGGYAVVYKGIRRDDGRVVVVKKV 486
           L V        T+ + V   +GKGGY  VYKG  +  G +V VK++
Sbjct: 158 LPVTYCELLEATNGFAVSNVIGKGGYGTVYKGELKGTGGIVAVKRL 203

>ref|NP_502587.2| Pelle/Interleukin receptor associated Kinase (54.0 kD) (pik-1)
           [Caenorhabditis elegans]
           gi|13650030|gb|AAK37545.1|AF348167_1 Pelle IRAK-like
           kinase 1 [Caenorhabditis elegans]
           gi|21615493|emb|CAB05550.2| C. elegans PIK-1 protein
           (corresponding sequence K09B11.1) [Caenorhabditis
           elegans]
          Length = 485

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 36/106 (33%), Positives = 51/106 (47%)
 Frame = +1

Query: 169 SEQMSRPTSRQSESRPQTVEAQPGAGSWQTVPSPARQASKNGSRPATREAPNTARGDGET 348
           S+QM +P   QS SR +  E +      ++ PSPA  A+   SR  T +    A     T
Sbjct: 119 SKQMVQPPGSQSASRLKKTEIK------ESSPSPAAAAASQLSRSNTDDTLRVAIEG--T 170

Query: 349 LGVVPSCPGRLTDAYDVQKPVGKGGYAVVYKGIRRDDGRVVVVKKV 486
           L V        T+ + V   +GKGGY  VYKG  +  G +V VK++
Sbjct: 171 LPVTYCELLEATNGFAVSNVIGKGGYGTVYKGELKGTGGIVAVKRL 216

>dbj|BAB93338.1| OJ1117_G01.23 [Oryza sativa (japonica cultivar-group)]
          Length = 178

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 243 GVLADGPVTSAAGIEKWQSPSNARG-SKHRQGGRGDPGRRTFMPWEANGCLRRPETRGER 419
           G + +G  T AAG++  + P  ARG S  R+G  G  G +    W A G  R   TR +R
Sbjct: 88  GAVWNGAATRAAGVDSGRPPRRARGGSNGRRGDLGGVGGKRQRGWRALGSARLTRTRAQR 147

Query: 420 RLCGGLQGHPPGRRSRGGREE 482
               G +    GR    GREE
Sbjct: 148 TGRAGEREREMGREGEMGREE 168

>gb|AAQ64684.1| NIMA-related kinase 3 [Chlamydomonas reinhardtii]
          Length = 911

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 19/48 (39%), Positives = 27/48 (55%)
 Frame = +1

Query: 373 GRLTDAYDVQKPVGKGGYAVVYKGIRRDDGRVVVVKKVEIFEMSAKKR 516
           G L D Y++Q+ +G G Y       R +DG  VV K++ +FEM  K R
Sbjct: 29  GTLGDRYELQREIGSGSYGQAVLATRLEDGMQVVCKQIRLFEMDDKAR 76



EST assemble image


clone accession position
1 CL69e12_r AV396785 1 523
2 LCL001f10_r AV626049 19 507




Chlamydomonas reinhardtii
Kazusa DNA Research Institute