KCC000810A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000810A_C01 KCC000810A_c01
cgcattctggcgtagcgcgctagcatcgccgcaaccgagagtcccagcgctccgctgagc
aacgcgccgctgaaacaggaGCTGAAATCGAATCGCATAGTGCCCTGCACAATGGCGGAG
GAAGCGCCGAAAGATATTGAGAGTGGCGCGGCACCCAAGGCCGACGTGCCCGACATCAAT
TCCTTCCCAGGCGATGACCTTGCGGCGAAGATTGCTGCCGCTGCCGACAGTGCCCCGGTC
GTCATCTTTGGCAAGGTGCACTGCCCCTTCAGCATTGAGGCGCGCCGCCTGTTTGCCCAG
CTAGGTGTGCCGACGCTGGACTACGATGTTGACGCCATGCCCCATGGCGGCGACGTGTGG
GACGCCCTGAAGAAGATGCACGCACCACAGAAAACCGTCCCGTACGTGTACGTCAACAAG
GTGATGGTGGGCGGCTGTGACGCGACCAAGCGCCTGCACTCGGACGGCGAGCTGGTCAAG
ATTCTGCACGCCGCGGGCGTCAAGGTGGCGGTCGCCGCGGCCACTGACATGGACGCCCGC
CTGGGCCGCTCGGGTGTGCTTGAGTCTGGCTCCTCGGCTGGTGGCACGCTGTTCCACTTC
CCCGAGGCCGTGGACAACCGCGTCGTGCGCCTGAACGGCTTCTGGTCGTTTGTGATCTGC
CTGCTGGTGGCAATCTACTACAAGGAGCGCGGCGCGCACTGGGTCATGGGCGGCCTCATG
GTGGAGTATGTGGCCCGCTTCATCGGTGGGAGCAACGCCTCAGCCCTGGGCGCGTTCTCG
GCCCTAATCACCTCGTTCGCTGATGTGCTCTTCATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000810A_C01 KCC000810A_c01
         (816 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH54599.1| Txnrd1 protein [Danio rerio]                            79  7e-14
sp|P55142|GLRX_ORYSA Glutaredoxin gi|485953|emb|CAA54397.1| glut...    77  3e-13
pir||JC5445 glutaredoxin - rice gi|2114207|dbj|BAA20071.1| gluta...    77  3e-13
gb|AAK53442.2|AF374461_1 glutaredoxin [Deschampsia antarctica]         75  2e-12
ref|NP_198853.1| glutaredoxin, putative [Arabidopsis thaliana] g...    72  1e-11

>gb|AAH54599.1| Txnrd1 protein [Danio rerio]
          Length = 600

 Score = 79.3 bits (194), Expect = 7e-14
 Identities = 43/108 (39%), Positives = 63/108 (57%), Gaps = 1/108 (0%)
 Frame = +1

Query: 166 VPDINSFPG-DDLAAKIAAAADSAPVVIFGKVHCPFSIEARRLFAQLGVPTLDYDVDAMP 342
           +P I +  G + + +KI    DS+ VV+F K  CPF ++ + LF +L V     ++D M 
Sbjct: 1   MPPIENDAGREQIRSKIKELIDSSAVVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLME 60

Query: 343 HGGDVWDALKKMHAPQKTVPYVYVNKVMVGGCDATKRLHSDGELVKIL 486
            G +  D L +M   QKTVP V++NK  +GGCD T + H DG L K+L
Sbjct: 61  DGTNYQDLLHEMTG-QKTVPNVFINKKHIGGCDNTMKAHKDGVLQKLL 107

>sp|P55142|GLRX_ORYSA Glutaredoxin gi|485953|emb|CAA54397.1| glutaredoxin [Oryza sativa]
          Length = 112

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 42/111 (37%), Positives = 65/111 (57%)
 Frame = +1

Query: 205 AKIAAAADSAPVVIFGKVHCPFSIEARRLFAQLGVPTLDYDVDAMPHGGDVWDALKKMHA 384
           AK      SAPVV++ K +CPF +  ++LF QLG      ++D    G ++  AL +   
Sbjct: 4   AKAKETVASAPVVVYSKSYCPFCVRVKKLFGQLGATFKAIELDGESDGSELQSALAEW-T 62

Query: 385 PQKTVPYVYVNKVMVGGCDATKRLHSDGELVKILHAAGVKVAVAAATDMDA 537
            Q+TVP V++N   +GGCD T  L+++G+LV +L  AG  +A +A T + A
Sbjct: 63  GQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGA-IASSAKTTITA 112

>pir||JC5445 glutaredoxin - rice gi|2114207|dbj|BAA20071.1| glutaredoxin [Oryza
           sativa (japonica cultivar-group)]
           gi|32489526|emb|CAE04729.1| OSJNBa0043L24.17 [Oryza
           sativa (japonica cultivar-group)]
          Length = 112

 Score = 77.0 bits (188), Expect = 3e-13
 Identities = 42/111 (37%), Positives = 65/111 (57%)
 Frame = +1

Query: 205 AKIAAAADSAPVVIFGKVHCPFSIEARRLFAQLGVPTLDYDVDAMPHGGDVWDALKKMHA 384
           AK      SAPVV++ K +CPF +  ++LF QLG      ++D    G ++  AL +   
Sbjct: 4   AKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEW-T 62

Query: 385 PQKTVPYVYVNKVMVGGCDATKRLHSDGELVKILHAAGVKVAVAAATDMDA 537
            Q+TVP V++N   +GGCD T  L+++G+LV +L  AG  +A +A T + A
Sbjct: 63  GQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGA-IASSAKTTITA 112

>gb|AAK53442.2|AF374461_1 glutaredoxin [Deschampsia antarctica]
          Length = 113

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 42/111 (37%), Positives = 59/111 (52%)
 Frame = +1

Query: 205 AKIAAAADSAPVVIFGKVHCPFSIEARRLFAQLGVPTLDYDVDAMPHGGDVWDALKKMHA 384
           AK    A S+PVV+F K +CP+    ++LF +LG      ++D    G D+  AL +   
Sbjct: 4   AKAKEIAASSPVVVFSKSYCPYCTRVKQLFTKLGASFKAIELDVEGDGADMQSALAQWTG 63

Query: 385 PQKTVPYVYVNKVMVGGCDATKRLHSDGELVKILHAAGVKVAVAAATDMDA 537
            QKTVP V++N   +GGCD T  L   G+LV +L  AG     A+   M A
Sbjct: 64  -QKTVPNVFINGKHIGGCDDTLALEKSGKLVPLLREAGAISGSASKETMTA 113

>ref|NP_198853.1| glutaredoxin, putative [Arabidopsis thaliana]
           gi|10178147|dbj|BAB11592.1| glutaredoxin-like protein
           [Arabidopsis thaliana] gi|17381282|gb|AAL36059.1|
           AT5g40370/MPO12_80 [Arabidopsis thaliana]
           gi|18252163|gb|AAL61914.1| glutaredoxin -like protein
           [Arabidopsis thaliana] gi|20453377|gb|AAM19927.1|
           AT5g40370/MPO12_80 [Arabidopsis thaliana]
           gi|21386923|gb|AAM47865.1| glutaredoxin-like protein
           [Arabidopsis thaliana] gi|21592438|gb|AAM64389.1|
           glutaredoxin-like protein [Arabidopsis thaliana]
          Length = 111

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 37/106 (34%), Positives = 53/106 (49%)
 Frame = +1

Query: 208 KIAAAADSAPVVIFGKVHCPFSIEARRLFAQLGVPTLDYDVDAMPHGGDVWDALKKMHAP 387
           K     +S  VV+F K +CP+ +  + L  QLG      ++D    G  +   L +    
Sbjct: 5   KAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTG- 63

Query: 388 QKTVPYVYVNKVMVGGCDATKRLHSDGELVKILHAAGVKVAVAAAT 525
           Q+TVP V++    +GGCDAT  LH DG+LV +L  AG      A T
Sbjct: 64  QRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTATT 109



EST assemble image


clone accession position
1 HCL030a06_r AV641220 1 461
2 HCL056e03_r AV642709 82 601
3 CL68g12_r AV396936 293 816




Chlamydomonas reinhardtii
Kazusa DNA Research Institute