Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000806A_C01 KCC000806A_c01
(545 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB18283.1| P0409B08.10 [Oryza sativa (japonica cultivar-gro... 47 2e-04
ref|NP_067051.1| serine arginine-rich pre-mRNA splicing factor S... 45 8e-04
ref|XP_046313.3| similar to FLJ00034 protein [Homo sapiens] gi|9... 45 8e-04
dbj|BAB15734.1| FLJ00034 protein [Homo sapiens] 45 8e-04
pir||T09854 proline-rich cell wall protein - upland cotton gi|43... 33 0.003
>dbj|BAB18283.1| P0409B08.10 [Oryza sativa (japonica cultivar-group)]
gi|12328535|dbj|BAB21193.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 421
Score = 46.6 bits (109), Expect = 2e-04
Identities = 54/168 (32%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Frame = +1
Query: 49 QRLLAAAPPSNTHTQSLALTHRRPWGLSRSLAPLSCSLNSKQ*SFRLASGRMCAKQQPAL 228
+R A +PPS PW L+ ++P S SL+ A+GR+ QP L
Sbjct: 8 RRRSALSPPSRAS----------PWSLA--ISPPSSSLSC-------AAGRL----QPPL 44
Query: 229 *PRLNRQPSMLA*HRSSSRELCCSRPRVTDGDARA---AYALLWPCR-PGPRPGTSSSSG 396
PR + S + SR L P V+ GD R+ A ALL+P R P P SS
Sbjct: 45 PPRRSAVRSRRRLLQHRSRLLSHGLPSVSRGDPRSYVPAVALLFPSRRPPPAASPSSPER 104
Query: 397 RVLARSL----QPSPAPKTATRSQPHPRTPAARSGAPTAPPARPMNLL 528
R A S QP P P++A R P R PP P + L
Sbjct: 105 RPAAPSSPSASQPPPLPRSALRFAGKPPEARPRRQPVALPPPTPSSRL 152
>ref|NP_067051.1| serine arginine-rich pre-mRNA splicing factor SR-A1 [Homo sapiens]
gi|32450502|gb|AAH53992.1| Serine arginine-rich pre-mRNA
splicing factor SR-A1 [Homo sapiens]
Length = 1312
Score = 44.7 bits (104), Expect = 8e-04
Identities = 35/108 (32%), Positives = 49/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 220 PAL*PRLN--RQPSMLA*HRSSSRELCCSRPRVTDGDARAAYALLWPCRPGPRPGTSSSS 393
P+L PRL R ++ +SSR C + GD A P P P ++SSS
Sbjct: 145 PSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPA--------PPPAPSSASSS 196
Query: 394 GRVLARSLQPSPAPKTATRSQPHPRTPAARSGAPTAPPARPMNLLEPF 537
PSP+P +++ S P P P AP APPA ++ +PF
Sbjct: 197 ---------PSPSPSSSSPSPPPPPPPP----APPAPPAPRFDIYDPF 231
>ref|XP_046313.3| similar to FLJ00034 protein [Homo sapiens]
gi|9438033|gb|AAF87552.1|AF254411_1 ser/arg-rich
pre-mRNA splicing factor SR-A1 [Homo sapiens]
Length = 1312
Score = 44.7 bits (104), Expect = 8e-04
Identities = 35/108 (32%), Positives = 49/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 220 PAL*PRLN--RQPSMLA*HRSSSRELCCSRPRVTDGDARAAYALLWPCRPGPRPGTSSSS 393
P+L PRL R ++ +SSR C + GD A P P P ++SSS
Sbjct: 145 PSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPA--------PPPAPSSASSS 196
Query: 394 GRVLARSLQPSPAPKTATRSQPHPRTPAARSGAPTAPPARPMNLLEPF 537
PSP+P +++ S P P P AP APPA ++ +PF
Sbjct: 197 ---------PSPSPSSSSPSPPPPPPPP----APPAPPAPRFDIYDPF 231
>dbj|BAB15734.1| FLJ00034 protein [Homo sapiens]
Length = 1343
Score = 44.7 bits (104), Expect = 8e-04
Identities = 35/108 (32%), Positives = 49/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 220 PAL*PRLN--RQPSMLA*HRSSSRELCCSRPRVTDGDARAAYALLWPCRPGPRPGTSSSS 393
P+L PRL R ++ +SSR C + GD A P P P ++SSS
Sbjct: 176 PSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPA--------PPPAPSSASSS 227
Query: 394 GRVLARSLQPSPAPKTATRSQPHPRTPAARSGAPTAPPARPMNLLEPF 537
PSP+P +++ S P P P AP APPA ++ +PF
Sbjct: 228 ---------PSPSPSSSSPSPPPPPPPP----APPAPPAPRFDIYDPF 262
>pir||T09854 proline-rich cell wall protein - upland cotton
gi|435039|gb|AAA79360.1| proline-rich cell wall protein
Length = 214
Score = 32.7 bits (73), Expect(2) = 0.003
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 198 PHVCKTTASAVATTEPSTQHASLTPQQQPGVVLQPPPRNRRGRACCVCPLVAVPP--RPP 371
P T + A+T P T A TP P V PPP + P V+ PP PP
Sbjct: 30 PTSTPATPTPPASTPPPTTQAPPTPTATPPPVSTPPPTSSPPPVTASPPPVSTPPPSSPP 89
Query: 372 P 374
P
Sbjct: 90 P 90
Score = 29.6 bits (65), Expect(2) = 0.003
Identities = 19/56 (33%), Positives = 22/56 (38%), Gaps = 1/56 (1%)
Frame = +1
Query: 352 PCRPGPRPGTSSSSGRVLARSLQPSPAPKTATRSQPHPRTPAARSGAP-TAPPARP 516
P P P T + A SP P T + P P TP + P T PPA P
Sbjct: 83 PPPSSPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPATP 138
